Rroxscaffold_7G00185330

Quinone-oxidoreductase homolog, chloroplastic

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Reverse (-)
24737405 .. 24738868
1464 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00185330.1

Sequence Viewer

Length: 921 bp
ATGGCAGCAAAGCTTATGCATGCAGTTCAGTATGACAGTTATGGTGGAGGACCTTCTGGTTTAAAGCATGTTCAAGTTCCAATCCCATCTCCAAAGAAAAATGAGGTTTTGCTCAAGTTGGAAGCAGCGAGTCTAAATCCAGGTGATTGTAAGATTCAGAAAGGCATTGCACGGCCTCTTTTCCCCCGCAAGTTGCCTTACATTCCTGTAACTGATGTGGCTGGAGAGGTTGTAGAGGTGGGACTGGGAGTCACAAAGTTCAAAGTGGGTGACAAAGTTGTGGCAATGCTCAGCTATGGTAATGGAGGTGGACTTGGTGAGTTTGCGGCAGCTAATGAGAAATTGGTAGTTTCTAGGCCTCCTGAAGTTTCAGCAGGAGACGGCGCAGGCTTACCGGTTGCTGCTCTTACAGCTCACCAGGCTCTCACCAAAGATGCAGGGATCAAGCTTGATGGAACAAGCCAGCAGAAGAACATACTCATTACCGGTGCCTCTGGTAACGTCGGTCTCTATGCAATCCAACTAGCAAAGCTCGGAAACGCTCATGTCACCGCCACTTGTGGAGCTCGTAACATTGAACTAGTCAAGAGCTTAGGGGCAGATGAGGTTCTTGACTACAAGACCCCTGAAGGGGCAGCTGTCAAGAGCCCATCTGGTCGGAAATATGATTTTGTGATCCACTCTTCATCAAAAGCAATTCCTTGGTCAGTCTTTGAGCCGAATTTGAGCTCAAATGGGAAGGTTATAGACCTTACCGCCGCCTCGACTCCTTGTGAGAACCTGGATTGTCTTGTTAAGTTGGTGAAGGAAGGAAAGCTCAAGACCGTGATTGACTCACATTTTCCTCTAAGCAAAGCTGAAGATGCTTGGGCTAAAAGACTTGATGGCTACAATACAGGGAAGATCATTGTGGAGCATTAG

Protein Analysis

306

Amino Acids

32.07

Weight (kDa)

8.84

Isoelectric Point (pI)

23.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 33 - 119 2.6e-14 Alcohol dehydrogenase GroES-like domain
ADH_zinc_N PF00107 168 - 230 2.3e-09 Zinc-binding dehydrogenase
ADH_zinc_N_2 PF13602 256 - 304 3e-09 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000313)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G13010
fragaria_vesca FvH4_2g18240 FvH4_2g18280 FvH4_2g18310 FvH4_2g18320 FvH4_2g18330 FvH4_2g18340 FvH4_2g18350
malus_domestica MD05G1166800.v1.1 MD05G1167200.v1.1 MD05G1167300.v1.1 MD05G1167400.v1.1 MD05G1167600.v1.1 MD05G1168000.v1.1 MD05G1168200.v1.1 MD05G1168400.v1.1 MD05G1168600.v1.1 MD05G1168700.v1.1 MD05G1168800.v1.1 MD10G1156900.v1.1 MD10G1157000.v1.1 MD10G1157100.v1.1 MD10G1157200.v1.1
prunus_persica Prupe.8G195100_v2.0.a1 Prupe.8G195100_v2.0.a1 Prupe.8G195300_v2.0.a1 Prupe.8G195600_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G196000_v2.0.a1 Prupe.8G196000_v2.0.a1
pyrus_communis pycom05g15560 pycom05g15600 pycom05g15610 pycom05g15620 pycom05g15630 pycom10g13550 pycom10g13570
rosa_chinensis RchiOBHm_Chr6g0283611 RchiOBHm_Chr6g0283631 RchiOBHm_Chr6g0283641 RchiOBHm_Chr6g0283661 RchiOBHm_Chr6g0283681 RchiOBHm_Chr6g0283691 RchiOBHm_Chr6g0283701 RchiOBHm_Chr6g0283711 RchiOBHm_Chr6g0283721
rosa_laevigata RLG00000012804 RLG00000012807 RLG00000012811
rosa_multiflora Rmu_co8263921.1_g000001 Rmu_sc0001521.1_g000009 Rmu_sc0002906.1_g000002 Rmu_sc0002906.1_g000011 Rmu_sc0002906.1_g000013 Rmu_sc0005719.1_g000016 Rmu_sc0005719.1_g000022 Rmu_sc0029460.1_g000001
rosa_roxburghii Rroxscaffold_7G00185240 Rroxscaffold_7G00185250 Rroxscaffold_7G00185270 Rroxscaffold_7G00185280 Rroxscaffold_7G00185290 Rroxscaffold_7G00185330 Rroxscaffold_7G00185350
rosa_rugosa Rorug06G0156100 Rorug06G0156300 Rorug06G0156400 Rorug06G0156500 Rorug06G0156600 Rorug06G0156700 Rorug06G0156800 Rorug06G0156900 Rorug06G0157000
rosa_samantha Rh6AG267900 Rh6AG268100 Rh6AG268200 Rh6AG268400 Rh6AG268600 Rh6AG268700 Rh6AG268900 Rh6AG269100 Rh6BG270700 Rh6BG270900 Rh6BG271000 Rh6BG271200 Rh6BG271400 Rh6BG271500 Rh6CG270200 Rh6CG270400 Rh6CG270500 Rh6CG270800 Rh6CG270900 Rh6CG271000 Rh6CG271100 Rh6CG271300 Rh6DG263900 Rh6DG264100 Rh6DG264200 Rh6DG264400 Rh6DG264600 Rh6DG264800 Rh6DG265200
rosa_wichuraiana Rw6G023210 Rw6G023220 Rw6G023230 Rw6G023240 Rw6G023250 Rw6G023260 Rw6G023270 Rw6G023280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 488
AciI CCGC 5 cut(s) 187, 326, 552, 756, 759
AclWI GGATC 2 cut(s) 449, 670
AcsI RAATTY 1 cut(s) 721
AcuI CTGAAG 3 cut(s) 384, 648, 879
AfiI CCNNNNNNNGG 2 cut(s) 630, 631
AgeI ACCGGT 2 cut(s) 394, 485
AgsI TTSAA 3 cut(s) 74, 262, 578
AhdI GACNNNNNGTC 1 cut(s) 248
AhlI ACTAGT 1 cut(s) 580
AjnI CCWGG 3 cut(s) 139, 417, 780
Alw21I GWGCWC 2 cut(s) 568, 731
Alw26I GTCTC 2 cut(s) 372, 512
AlwI GGATC 2 cut(s) 449, 670
AoxI GGCC 2 cut(s) 173, 356
ApeKI GCWGC 5 cut(s) 5, 125, 329, 401, 635
ApoI RAATTY 1 cut(s) 721
AsiGI ACCGGT 2 cut(s) 394, 485
AspLEI GCGC 1 cut(s) 386
AspS9I GGNCC 1 cut(s) 50
AsuHPI GGTGA 7 cut(s) 155, 281, 329, 407, 418, 541, 814
AvaII GGWCC 1 cut(s) 50
BanI GGYRCC 1 cut(s) 488
BanII GRGCYC 3 cut(s) 568, 650, 731
Bbv12I GWGCWC 2 cut(s) 568, 731
BbvI GCAGC 5 cut(s) 17, 137, 341, 388, 647
BccI CCATC 4 cut(s) 94, 446, 658, 878
BceAI ACGGC 2 cut(s) 188, 397
BciT130I CCWGG 3 cut(s) 141, 419, 782
BcoDI GTCTC 2 cut(s) 372, 512
BcuI ACTAGT 1 cut(s) 580
BfaI CTAG 3 cut(s) 354, 524, 581
BisI GCNGC 7 cut(s) 6, 126, 327, 330, 402, 636, 759
BlpI GCTNAGC 1 cut(s) 290
BlsI GCNGC 7 cut(s) 7, 127, 328, 331, 403, 637, 760
Bme1390I CCNGG 3 cut(s) 141, 419, 782
Bme18I GGWCC 1 cut(s) 50
BmeRI GACNNNNNGTC 1 cut(s) 248
BmgT120I GGNCC 1 cut(s) 50
BmiI GGNNCC 1 cut(s) 490
BmrFI CCNGG 3 cut(s) 141, 419, 782
BmrI ACTGGG 1 cut(s) 254
BmsI GCATC 2 cut(s) 424, 853
BmuI ACTGGG 1 cut(s) 254
BpmI CTGGAG 1 cut(s) 243
Bpu10I CCTNAGC 1 cut(s) 592
Bpu1102I GCTNAGC 1 cut(s) 290
BpuEI CTTGAG 2 cut(s) 98, 803
BsaI GGTCTC 1 cut(s) 512
BsaJI CCNNGG 1 cut(s) 701
BsaWI WCCGGW 2 cut(s) 394, 485
BsaXI ACNNNNNCTCC 2 cut(s) 216, 246
Bsc4I CCNNNNNNNGG 2 cut(s) 630, 631
Bse118I RCCGGY 2 cut(s) 394, 485
Bse1I ACTGG 1 cut(s) 249
Bse3DI GCAATG 2 cut(s) 165, 291
BseBI CCWGG 3 cut(s) 141, 419, 782
BseDI CCNNGG 1 cut(s) 701
BseLI CCNNNNNNNGG 2 cut(s) 630, 631
BseMI GCAATG 2 cut(s) 165, 291
BseMII CTCAG 1 cut(s) 304
BseNI ACTGG 1 cut(s) 249
BseXI GCAGC 5 cut(s) 17, 137, 341, 388, 647
BshFI GGCC 2 cut(s) 175, 358
BshNI GGYRCC 1 cut(s) 488
BshTI ACCGGT 2 cut(s) 394, 485
BsiHKAI GWGCWC 2 cut(s) 568, 731
BsiSI CCGG 2 cut(s) 395, 486
BslFI GGGAC 1 cut(s) 255
BslI CCNNNNNNNGG 2 cut(s) 630, 631
BsmAI GTCTC 2 cut(s) 372, 512
BsmBI CGTCTC 1 cut(s) 372
BsmFI GGGAC 1 cut(s) 255
BsnI GGCC 2 cut(s) 175, 358
Bso31I GGTCTC 1 cut(s) 512
Bsp1286I GDGCHC 3 cut(s) 568, 650, 731
Bsp143I GATC 3 cut(s) 441, 675, 903
Bsp1720I GCTNAGC 1 cut(s) 290
BspACI CCGC 5 cut(s) 187, 326, 552, 756, 759
BspANI GGCC 2 cut(s) 175, 358
BspCNI CTCAG 1 cut(s) 303
BspLI GGNNCC 1 cut(s) 490
BspPI GGATC 2 cut(s) 449, 670
BspT107I GGYRCC 1 cut(s) 488
BspTNI GGTCTC 1 cut(s) 512
BsrDI GCAATG 2 cut(s) 165, 291
BsrFI RCCGGY 2 cut(s) 394, 485
BsrI ACTGG 1 cut(s) 249
BssAI RCCGGY 2 cut(s) 394, 485
BssECI CCNNGG 1 cut(s) 701
BssMI GATC 3 cut(s) 441, 675, 903
BssT1I CCWWGG 1 cut(s) 701
Bst2UI CCWGG 3 cut(s) 141, 419, 782
Bst4CI ACNGT 2 cut(s) 38, 826
Bst6I CTCTTC 1 cut(s) 688
BstC8I GCNNGC 3 cut(s) 21, 388, 464
BstDEI CTNAG 3 cut(s) 290, 592, 848
BstHHI GCGC 1 cut(s) 386
BstKTI GATC 3 cut(s) 444, 678, 906
BstMAI GTCTC 2 cut(s) 372, 512
BstMBI GATC 3 cut(s) 441, 675, 903
BstMWI GCNNNNNNNGC 3 cut(s) 410, 419, 863
BstNI CCWGG 3 cut(s) 141, 419, 782
BstNSI RCATGY 2 cut(s) 23, 71
BstSCI CCNGG 3 cut(s) 139, 417, 780
BstV1I GCAGC 5 cut(s) 17, 137, 341, 388, 647
BsuRI GGCC 2 cut(s) 175, 358
Cac8I GCNNGC 3 cut(s) 21, 388, 464
CfoI GCGC 1 cut(s) 386
Cfr10I RCCGGY 2 cut(s) 394, 485
Cfr13I GGNCC 1 cut(s) 50
CspAI ACCGGT 2 cut(s) 394, 485
CviAII CATG 3 cut(s) 20, 68, 545
DdeI CTNAG 3 cut(s) 290, 592, 848
DpnI GATC 3 cut(s) 443, 677, 905
DpnII GATC 3 cut(s) 441, 675, 903
DraI TTTAAA 1 cut(s) 63
DriI GACNNNNNGTC 1 cut(s) 248
Eam1104I CTCTTC 1 cut(s) 688
Eam1105I GACNNNNNGTC 1 cut(s) 248
EarI CTCTTC 1 cut(s) 688
Ecl136II GAGCTC 2 cut(s) 566, 729
Eco130I CCWWGG 1 cut(s) 701
Eco147I AGGCCT 1 cut(s) 358
Eco24I GRGCYC 3 cut(s) 568, 650, 731
Eco31I GGTCTC 1 cut(s) 512
Eco47I GGWCC 1 cut(s) 50
Eco53kI GAGCTC 2 cut(s) 566, 729
Eco57I CTGAAG 3 cut(s) 384, 648, 879
EcoICRI GAGCTC 2 cut(s) 566, 729
EcoO109I RGGNCCY 1 cut(s) 50
EcoRII CCWGG 3 cut(s) 139, 417, 780
EcoT14I CCWWGG 1 cut(s) 701
EcoT22I ATGCAT 1 cut(s) 21
EcoT38I GRGCYC 3 cut(s) 568, 650, 731
ErhI CCWWGG 1 cut(s) 701
Esp3I CGTCTC 1 cut(s) 372
FaeI CATG 3 cut(s) 23, 71, 548
FaqI GGGAC 1 cut(s) 255
FatI CATG 3 cut(s) 19, 67, 544
FauI CCCGC 1 cut(s) 194
Fnu4HI GCNGC 7 cut(s) 6, 126, 327, 330, 402, 636, 759
FriOI GRGCYC 3 cut(s) 568, 650, 731
Fsp4HI GCNGC 7 cut(s) 6, 126, 327, 330, 402, 636, 759
FspBI CTAG 3 cut(s) 354, 524, 581
GlaI GCGC 1 cut(s) 385
GluI GCNGC 7 cut(s) 6, 126, 327, 330, 402, 636, 759
GsuI CTGGAG 1 cut(s) 243
HaeIII GGCC 2 cut(s) 175, 358
HapII CCGG 2 cut(s) 395, 486
HhaI GCGC 1 cut(s) 386
Hin1II CATG 3 cut(s) 23, 71, 548
Hin6I GCGC 1 cut(s) 384
HinP1I GCGC 1 cut(s) 384
HindIII AAGCTT 2 cut(s) 11, 446
HinfI GANTC 5 cut(s) 130, 154, 249, 766, 833
HpaII CCGG 2 cut(s) 395, 486
HphI GGTGA 7 cut(s) 155, 281, 329, 407, 418, 541, 814
Hpy166II GTNNAC 1 cut(s) 311
Hpy188I TCNGA 3 cut(s) 159, 536, 660
Hpy188III TCNNGA 5 cut(s) 362, 586, 611, 643, 820
Hpy8I GTNNAC 1 cut(s) 311
Hpy99I CGWCG 1 cut(s) 506
HpyAV CCTTC 5 cut(s) 63, 623, 733, 799, 803
HpyCH4III ACNGT 2 cut(s) 38, 826
HpyCH4IV ACGT 1 cut(s) 501
HpyCH4V TGCA 5 cut(s) 19, 23, 170, 437, 515
HpyF10VI GCNNNNNNNGC 3 cut(s) 410, 419, 863
HpyF3I CTNAG 3 cut(s) 290, 592, 848
HpySE526I ACGT 1 cut(s) 501
Hsp92II CATG 3 cut(s) 23, 71, 548
HspAI GCGC 1 cut(s) 384
Kzo9I GATC 3 cut(s) 441, 675, 903
LmnI GCTCC 2 cut(s) 563, 913
Lsp1109I GCAGC 5 cut(s) 17, 137, 341, 388, 647
LweI GCATC 2 cut(s) 424, 853
MaeI CTAG 3 cut(s) 354, 524, 581
MaeII ACGT 1 cut(s) 501
MaeIII GTNAC 6 cut(s) 208, 250, 269, 497, 547, 569
MalI GATC 3 cut(s) 443, 677, 905
MboI GATC 3 cut(s) 441, 675, 903
MboII GAAGA 4 cut(s) 481, 675, 872, 913
MhlI GDGCHC 3 cut(s) 568, 650, 731
MluCI AATT 3 cut(s) 341, 696, 721
MlyI GAGTC 4 cut(s) 139, 258, 760, 827
MmeI TCCRAC 3 cut(s) 99, 544, 638
Mph1103I ATGCAT 1 cut(s) 21
MseI TTAA 2 cut(s) 62, 795
MspA1I CMGCKG 1 cut(s) 638
MspI CCGG 2 cut(s) 395, 486
MspR9I CCNGG 3 cut(s) 141, 419, 782
MvaI CCWGG 3 cut(s) 141, 419, 782
MwoI GCNNNNNNNGC 3 cut(s) 410, 419, 863
NdeII GATC 3 cut(s) 441, 675, 903
NlaIII CATG 3 cut(s) 23, 71, 548
NlaIV GGNNCC 1 cut(s) 490
NmuCI GTSAC 3 cut(s) 250, 269, 547
NsiI ATGCAT 1 cut(s) 21
NspI RCATGY 2 cut(s) 23, 71
PaeI GCATGC 1 cut(s) 23
PceI AGGCCT 1 cut(s) 358
PfeI GAWTC 1 cut(s) 154
PinAI ACCGGT 2 cut(s) 394, 485
PkrI GCNGC 7 cut(s) 7, 127, 328, 331, 403, 637, 760
PleI GAGTC 4 cut(s) 138, 257, 760, 827
PpsI GAGTC 4 cut(s) 138, 257, 760, 827
PpuMI RGGWCCY 1 cut(s) 50
Psp124BI GAGCTC 2 cut(s) 568, 731
Psp5II RGGWCCY 1 cut(s) 50
Psp6I CCWGG 3 cut(s) 139, 417, 780
PspGI CCWGG 3 cut(s) 139, 417, 780
PspN4I GGNNCC 1 cut(s) 490
PspPI GGNCC 1 cut(s) 50
PspPPI RGGWCCY 1 cut(s) 50
PvuII CAGCTG 1 cut(s) 638
SacI GAGCTC 2 cut(s) 568, 731
SaqAI TTAA 2 cut(s) 62, 795
SatI GCNGC 7 cut(s) 6, 126, 327, 330, 402, 636, 759
Sau3AI GATC 3 cut(s) 441, 675, 903
Sau96I GGNCC 1 cut(s) 50
SchI GAGTC 4 cut(s) 139, 258, 760, 827
ScrFI CCNGG 3 cut(s) 141, 419, 782
SduI GDGCHC 3 cut(s) 568, 650, 731
SfaNI GCATC 2 cut(s) 424, 853
SinI GGWCC 1 cut(s) 50
SmlI CTYRAG 2 cut(s) 113, 818
SmoI CTYRAG 2 cut(s) 113, 818
SpeI ACTAGT 1 cut(s) 580
SphI GCATGC 1 cut(s) 23
Sse9I AATT 3 cut(s) 341, 696, 721
SseBI AGGCCT 1 cut(s) 358
SsiI CCGC 5 cut(s) 187, 326, 552, 756, 759
SspMI CTAG 3 cut(s) 354, 524, 581
SstI GAGCTC 2 cut(s) 568, 731
StuI AGGCCT 1 cut(s) 358
StyD4I CCNGG 3 cut(s) 139, 417, 780
StyI CCWWGG 1 cut(s) 701
TaaI ACNGT 2 cut(s) 38, 826
TaiI ACGT 1 cut(s) 504
TaqI TCGA 1 cut(s) 764
TaqII GACCGA 1 cut(s) 494
TasI AATT 3 cut(s) 341, 696, 721
TauI GCSGC 2 cut(s) 329, 761
TfiI GAWTC 1 cut(s) 154
Tru1I TTAA 2 cut(s) 62, 795
Tru9I TTAA 2 cut(s) 62, 795
TseFI GTSAC 3 cut(s) 250, 269, 547
TseI GCWGC 5 cut(s) 5, 125, 329, 401, 635
Tsp45I GTSAC 3 cut(s) 250, 269, 547
TspDTI ATGAA 1 cut(s) 675
VpaK11BI GGWCC 1 cut(s) 50
XapI RAATTY 1 cut(s) 721
XceI RCATGY 2 cut(s) 23, 71
XspI CTAG 3 cut(s) 354, 524, 581
Zsp2I ATGCAT 1 cut(s) 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.