Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0000313

Physical Location & Seq

Genomic Coordinates Forward (+)

29717650 .. 29718779

Gene Structure 1130 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1167300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGATTCAATACTTTGTAATATCAACTGATGTGGCCGGAGACGTTGTAGAAGTTGGACAAGGTGCCAAAAAGTTCAAATTCGGTGACAAAGTTGTTGTCCTGCTCAGCCATTTCAGTGGAGGAGGACTGGCTGAGTTTGCTGCAACTAATGAGAGATTAATGGTTGCTAGGCCACCTGAAGTTTCAGCTGCCGAAGGCGCATGCTTACTGGTTGCCGGCCTCACAGCTCCCCAGGCTCTCACCCAATGTGCAGGGGTCAAGGTTGACGGAACTGGTCAAAATAAAGAACATATTGATCACTGCTGCCTCTGGTGGCGTGGGGCACTATGCAGTCCAACTAGCAAAGCTTGGGATACTAACGTTACAGCCACATGTGGGGTGTGTAACATCGAATTGGTCAAGAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N_2

Protein Analysis

136

Amino Acids

14.18

Weight (kDa)

5.86

Isoelectric Point (pI)

25.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13010
fragaria_vesca	FvH4_2g18240 FvH4_2g18280 FvH4_2g18310 FvH4_2g18320 FvH4_2g18330 FvH4_2g18340 FvH4_2g18350
malus_domestica	MD05G1166800.v1.1 MD05G1167200.v1.1 MD05G1167300.v1.1 MD05G1167400.v1.1 MD05G1167600.v1.1 MD05G1168000.v1.1 MD05G1168200.v1.1 MD05G1168400.v1.1 MD05G1168600.v1.1 MD05G1168700.v1.1 MD05G1168800.v1.1 MD10G1156900.v1.1 MD10G1157000.v1.1 MD10G1157100.v1.1 MD10G1157200.v1.1
prunus_persica	Prupe.8G195100_v2.0.a1 Prupe.8G195100_v2.0.a1 Prupe.8G195300_v2.0.a1 Prupe.8G195600_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G196000_v2.0.a1 Prupe.8G196000_v2.0.a1
pyrus_communis	pycom05g15560 pycom05g15600 pycom05g15610 pycom05g15620 pycom05g15630 pycom10g13550 pycom10g13570
rosa_chinensis	RchiOBHm_Chr6g0283611 RchiOBHm_Chr6g0283631 RchiOBHm_Chr6g0283641 RchiOBHm_Chr6g0283661 RchiOBHm_Chr6g0283681 RchiOBHm_Chr6g0283691 RchiOBHm_Chr6g0283701 RchiOBHm_Chr6g0283711 RchiOBHm_Chr6g0283721
rosa_laevigata	RLG00000012804 RLG00000012807 RLG00000012811
rosa_multiflora	Rmu_co8263921.1_g000001 Rmu_sc0001521.1_g000009 Rmu_sc0002906.1_g000002 Rmu_sc0002906.1_g000011 Rmu_sc0002906.1_g000013 Rmu_sc0005719.1_g000016 Rmu_sc0005719.1_g000022 Rmu_sc0029460.1_g000001
rosa_roxburghii	Rroxscaffold_7G00185240 Rroxscaffold_7G00185250 Rroxscaffold_7G00185270 Rroxscaffold_7G00185280 Rroxscaffold_7G00185290 Rroxscaffold_7G00185330 Rroxscaffold_7G00185350
rosa_rugosa	Rorug06G0156100 Rorug06G0156300 Rorug06G0156400 Rorug06G0156500 Rorug06G0156600 Rorug06G0156700 Rorug06G0156800 Rorug06G0156900 Rorug06G0157000
rosa_samantha	Rh6AG267900 Rh6AG268100 Rh6AG268200 Rh6AG268400 Rh6AG268600 Rh6AG268700 Rh6AG268900 Rh6AG269100 Rh6BG270700 Rh6BG270900 Rh6BG271000 Rh6BG271200 Rh6BG271400 Rh6BG271500 Rh6CG270200 Rh6CG270400 Rh6CG270500 Rh6CG270800 Rh6CG270900 Rh6CG271000 Rh6CG271100 Rh6CG271300 Rh6DG263900 Rh6DG264100 Rh6DG264200 Rh6DG264400 Rh6DG264600 Rh6DG264800 Rh6DG265200
rosa_wichuraiana	Rw6G023210 Rw6G023220 Rw6G023230 Rw6G023240 Rw6G023250 Rw6G023260 Rw6G023270 Rw6G023280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	62
AclI	AACGTT	1 cut(s)	360
AcoI	YGGCCR	1 cut(s)	33
AcsI	RAATTY	1 cut(s)	77
AcuI	CTGAAG	1 cut(s)	198
AfiI	CCNNNNNNNGG	1 cut(s)	375
AflIII	ACRYGT	1 cut(s)	371
AgsI	TTSAA	2 cut(s)	8, 76
AjnI	CCWGG	1 cut(s)	231
AluBI	AGCT	3 cut(s)	188, 227, 347
AluI	AGCT	3 cut(s)	188, 227, 347
Alw26I	GTCTC	1 cut(s)	33
AoxI	GGCC	3 cut(s)	33, 170, 217
ApeKI	GCWGC	3 cut(s)	140, 188, 303
ApoI	RAATTY	1 cut(s)	77
ArsI	GACNNNNNNTTYG	2 cut(s)	81, 113
AseI	ATTAAT	1 cut(s)	158
AspLEI	GCGC	1 cut(s)	200
AsuHPI	GGTGA	2 cut(s)	95, 232
BaeGI	GKGCMC	1 cut(s)	325
BaeI	ACNNNNGTAYC	2 cut(s)	345, 378
BanI	GGYRCC	1 cut(s)	62
BbvI	GCAGC	3 cut(s)	127, 175, 290
BciT130I	CCWGG	1 cut(s)	233
BciVI	GTATCC	1 cut(s)	346
BclI	TGATCA	1 cut(s)	295
BcoDI	GTCTC	1 cut(s)	33
BfaI	CTAG	2 cut(s)	168, 339
BfuI	GTATCC	1 cut(s)	346
BisI	GCNGC	3 cut(s)	141, 189, 304
BlpI	GCTNAGC	1 cut(s)	104
BlsI	GCNGC	3 cut(s)	142, 190, 305
Bme1390I	CCNGG	1 cut(s)	233
BmiI	GGNNCC	1 cut(s)	64
BmrFI	CCNGG	1 cut(s)	233
Bpu1102I	GCTNAGC	1 cut(s)	104
BsaJI	CCNNGG	1 cut(s)	231
BsaXI	ACNNNNNCTCC	2 cut(s)	30, 60
Bsc4I	CCNNNNNNNGG	1 cut(s)	375
Bse118I	RCCGGY	1 cut(s)	215
Bse1I	ACTGG	3 cut(s)	132, 213, 277
BseBI	CCWGG	1 cut(s)	233
BseDI	CCNNGG	1 cut(s)	231
BseLI	CCNNNNNNNGG	1 cut(s)	375
BseMII	CTCAG	2 cut(s)	118, 123
BseNI	ACTGG	3 cut(s)	132, 213, 277
BseRI	GAGGAG	1 cut(s)	135
BseSI	GKGCMC	1 cut(s)	325
BseXI	GCAGC	3 cut(s)	127, 175, 290
BsgI	GTGCAG	1 cut(s)	270
BshFI	GGCC	3 cut(s)	35, 172, 219
BshNI	GGYRCC	1 cut(s)	62
BsiSI	CCGG	2 cut(s)	36, 216
BslI	CCNNNNNNNGG	1 cut(s)	375
BsmAI	GTCTC	1 cut(s)	33
BsmBI	CGTCTC	1 cut(s)	33
BsnI	GGCC	3 cut(s)	35, 172, 219
Bsp1286I	GDGCHC	1 cut(s)	325
Bsp143I	GATC	1 cut(s)	295
Bsp1720I	GCTNAGC	1 cut(s)	104
BspANI	GGCC	3 cut(s)	35, 172, 219
BspCNI	CTCAG	2 cut(s)	117, 124
BspLI	GGNNCC	1 cut(s)	64
BspT107I	GGYRCC	1 cut(s)	62
BsrFI	RCCGGY	1 cut(s)	215
BsrI	ACTGG	3 cut(s)	132, 213, 277
BssAI	RCCGGY	1 cut(s)	215
BssECI	CCNNGG	1 cut(s)	231
BssMI	GATC	1 cut(s)	295
Bst2UI	CCWGG	1 cut(s)	233
BstC8I	GCNNGC	2 cut(s)	202, 217
BstDEI	CTNAG	2 cut(s)	104, 132
BstHHI	GCGC	1 cut(s)	200
BstKTI	GATC	1 cut(s)	298
BstMAI	GTCTC	1 cut(s)	33
BstMBI	GATC	1 cut(s)	295
BstMWI	GCNNNNNNNGC	3 cut(s)	137, 197, 233
BstNI	CCWGG	1 cut(s)	233
BstNSI	RCATGY	2 cut(s)	204, 375
BstSCI	CCNGG	1 cut(s)	231
BstSLI	GKGCMC	1 cut(s)	325
BstV1I	GCAGC	3 cut(s)	127, 175, 290
BstXI	CCANNNNNNTGG	1 cut(s)	116
BsuI	GTATCC	1 cut(s)	346
BsuRI	GGCC	3 cut(s)	35, 172, 219
BtsI	GCAGTG	1 cut(s)	298
BtsIMutI	CAGTG	2 cut(s)	121, 298
Cac8I	GCNNGC	2 cut(s)	202, 217
CfoI	GCGC	1 cut(s)	200
Cfr10I	RCCGGY	1 cut(s)	215
CspCI	CAANNNNNGTGG	2 cut(s)	12, 47
CviAII	CATG	2 cut(s)	201, 372
DdeI	CTNAG	2 cut(s)	104, 132
DpnI	GATC	1 cut(s)	297
DpnII	GATC	1 cut(s)	295
EaeI	YGGCCR	1 cut(s)	33
Eco57I	CTGAAG	1 cut(s)	198
EcoRII	CCWGG	1 cut(s)	231
Esp3I	CGTCTC	1 cut(s)	33
FaeI	CATG	2 cut(s)	204, 375
FaiI	YATR	4 cut(s)	202, 291, 328, 373
FatI	CATG	2 cut(s)	200, 371
FbaI	TGATCA	1 cut(s)	295
Fnu4HI	GCNGC	3 cut(s)	141, 189, 304
Fsp4HI	GCNGC	3 cut(s)	141, 189, 304
FspBI	CTAG	2 cut(s)	168, 339
GlaI	GCGC	1 cut(s)	199
GluI	GCNGC	3 cut(s)	141, 189, 304
HaeIII	GGCC	3 cut(s)	35, 172, 219
HapII	CCGG	2 cut(s)	36, 216
HhaI	GCGC	1 cut(s)	200
Hin1II	CATG	2 cut(s)	204, 375
Hin6I	GCGC	1 cut(s)	198
HinP1I	GCGC	1 cut(s)	198
HincII	GTYRAC	1 cut(s)	265
HindII	GTYRAC	1 cut(s)	265
HindIII	AAGCTT	1 cut(s)	345
HinfI	GANTC	1 cut(s)	4
HpaII	CCGG	2 cut(s)	36, 216
HphI	GGTGA	2 cut(s)	95, 232
Hpy166II	GTNNAC	1 cut(s)	265
Hpy188III	TCNNGA	1 cut(s)	400
Hpy8I	GTNNAC	1 cut(s)	265
HpyAV	CCTTC	1 cut(s)	188
HpyCH4IV	ACGT	2 cut(s)	42, 360
HpyCH4V	TGCA	3 cut(s)	143, 251, 330
HpyF10VI	GCNNNNNNNGC	3 cut(s)	137, 197, 233
HpyF3I	CTNAG	2 cut(s)	104, 132
HpySE526I	ACGT	2 cut(s)	42, 360
Hsp92II	CATG	2 cut(s)	204, 375
HspAI	GCGC	1 cut(s)	198
KroI	GCCGGC	1 cut(s)	215
KroNI	GCCGGC	1 cut(s)	217
Ksp22I	TGATCA	1 cut(s)	295
Kzo9I	GATC	1 cut(s)	295
LmnI	GCTCC	1 cut(s)	232
Lsp1109I	GCAGC	3 cut(s)	127, 175, 290
MaeI	CTAG	2 cut(s)	168, 339
MaeII	ACGT	2 cut(s)	42, 360
MaeIII	GTNAC	3 cut(s)	83, 361, 383
MalI	GATC	1 cut(s)	297
MboI	GATC	1 cut(s)	295
MhlI	GDGCHC	1 cut(s)	325
MluCI	AATT	2 cut(s)	77, 392
MmeI	TCCRAC	2 cut(s)	34, 359
MnlI	CCTC	4 cut(s)	113, 116, 230, 317
MroNI	GCCGGC	1 cut(s)	215
MseI	TTAA	2 cut(s)	158, 406
MslI	CAYNNNNRTG	1 cut(s)	114
MspA1I	CMGCKG	1 cut(s)	188
MspI	CCGG	2 cut(s)	36, 216
MspR9I	CCNGG	1 cut(s)	233
MvaI	CCWGG	1 cut(s)	233
MwoI	GCNNNNNNNGC	3 cut(s)	137, 197, 233
NaeI	GCCGGC	1 cut(s)	217
NdeII	GATC	1 cut(s)	295
NgoMIV	GCCGGC	1 cut(s)	215
NlaIII	CATG	2 cut(s)	204, 375
NlaIV	GGNNCC	1 cut(s)	64
NmuCI	GTSAC	1 cut(s)	83
NspI	RCATGY	2 cut(s)	204, 375
PaeI	GCATGC	1 cut(s)	204
PciI	ACATGT	1 cut(s)	371
PdiI	GCCGGC	1 cut(s)	217
PfeI	GAWTC	1 cut(s)	4
PkrI	GCNGC	3 cut(s)	142, 190, 305
PscI	ACATGT	1 cut(s)	371
PshBI	ATTAAT	1 cut(s)	158
Psp1406I	AACGTT	1 cut(s)	360
Psp6I	CCWGG	1 cut(s)	231
PspGI	CCWGG	1 cut(s)	231
PspN4I	GGNNCC	1 cut(s)	64
PvuII	CAGCTG	1 cut(s)	188
RseI	CAYNNNNRTG	1 cut(s)	114
SaqAI	TTAA	2 cut(s)	158, 406
SatI	GCNGC	3 cut(s)	141, 189, 304
Sau3AI	GATC	1 cut(s)	295
ScrFI	CCNGG	1 cut(s)	233
SduI	GDGCHC	1 cut(s)	325
SetI	ASST	8 cut(s)	45, 64, 178, 190, 229, 264, 349, 363
SmiMI	CAYNNNNRTG	1 cut(s)	114
SphI	GCATGC	1 cut(s)	204
Sse9I	AATT	2 cut(s)	77, 392
SspMI	CTAG	2 cut(s)	168, 339
StyD4I	CCNGG	1 cut(s)	231
TaiI	ACGT	2 cut(s)	45, 363
TaqI	TCGA	1 cut(s)	390
TasI	AATT	2 cut(s)	77, 392
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	2 cut(s)	158, 406
Tru9I	TTAA	2 cut(s)	158, 406
TscAI	CASTG	2 cut(s)	121, 305
TseFI	GTSAC	1 cut(s)	83
TseI	GCWGC	3 cut(s)	140, 188, 303
Tsp45I	GTSAC	1 cut(s)	83
TspGWI	ACGGA	1 cut(s)	282
TspRI	CASTG	2 cut(s)	121, 305
VspI	ATTAAT	1 cut(s)	158
XapI	RAATTY	1 cut(s)	77
XceI	RCATGY	2 cut(s)	204, 375
XspI	CTAG	2 cut(s)	168, 339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.