Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0029460.1

Orthogroup ID

OG0000313

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1435

Gene Structure 1435 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0029460.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 782 bp

ttactgatgtggccggagaggttttggaggttggacaaggagttcggaagtttaaagcaggcgacaaagttgtggcatatctccacatcgttaatggaggtggatttgctgagtttgcaactgctagtgagaatttgacggttactaggccgcctgaagtttcagcagccgaagctgcaggattacctgttgctggtctcacagctcaccagtgtctcacccaagctgcaggagtcaagcttgacggcactggcccacagaagaacatattggttactgctgcctccggtggtgtgggtcagtatgcagtccaacttgcaaagctgggaaacacccacgtaacagctacatgtggagctcgtaacattgatttcgtcaagagcttaggggccgatgaggttcttgactacaagacccctgaaggggcagctctgaagagcccatctggtcgcaaatatgatgctgtaatccactgtgcgacgggcattccttggtgcacttttgagccgaatttgagtccaaatgggaaggttatagacattactcctggtccaagtgctttgtttacttttgctctaaagaatctcaccttctccaagaagaagctagtgccgctgctcatgaatgccaaggcggagaatctggattatcttgtgaagttggtgaaggaaggaaagctgaagacagtgatcgactcaaagtatcctctgagcgaggctgaagatgcttgggctaagagtattgatggccatgctactgggaagatcattgtggagccttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N_2

Protein Analysis

259

Amino Acids

27.05

Weight (kDa)

7.6

Isoelectric Point (pI)

23.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13010
fragaria_vesca	FvH4_2g18240 FvH4_2g18280 FvH4_2g18310 FvH4_2g18320 FvH4_2g18330 FvH4_2g18340 FvH4_2g18350
malus_domestica	MD05G1166800.v1.1 MD05G1167200.v1.1 MD05G1167300.v1.1 MD05G1167400.v1.1 MD05G1167600.v1.1 MD05G1168000.v1.1 MD05G1168200.v1.1 MD05G1168400.v1.1 MD05G1168600.v1.1 MD05G1168700.v1.1 MD05G1168800.v1.1 MD10G1156900.v1.1 MD10G1157000.v1.1 MD10G1157100.v1.1 MD10G1157200.v1.1
prunus_persica	Prupe.8G195100_v2.0.a1 Prupe.8G195100_v2.0.a1 Prupe.8G195300_v2.0.a1 Prupe.8G195600_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G196000_v2.0.a1 Prupe.8G196000_v2.0.a1
pyrus_communis	pycom05g15560 pycom05g15600 pycom05g15610 pycom05g15620 pycom05g15630 pycom10g13550 pycom10g13570
rosa_chinensis	RchiOBHm_Chr6g0283611 RchiOBHm_Chr6g0283631 RchiOBHm_Chr6g0283641 RchiOBHm_Chr6g0283661 RchiOBHm_Chr6g0283681 RchiOBHm_Chr6g0283691 RchiOBHm_Chr6g0283701 RchiOBHm_Chr6g0283711 RchiOBHm_Chr6g0283721
rosa_laevigata	RLG00000012804 RLG00000012807 RLG00000012811
rosa_multiflora	Rmu_co8263921.1_g000001 Rmu_sc0001521.1_g000009 Rmu_sc0002906.1_g000002 Rmu_sc0002906.1_g000011 Rmu_sc0002906.1_g000013 Rmu_sc0005719.1_g000016 Rmu_sc0005719.1_g000022 Rmu_sc0029460.1_g000001
rosa_roxburghii	Rroxscaffold_7G00185240 Rroxscaffold_7G00185250 Rroxscaffold_7G00185270 Rroxscaffold_7G00185280 Rroxscaffold_7G00185290 Rroxscaffold_7G00185330 Rroxscaffold_7G00185350
rosa_rugosa	Rorug06G0156100 Rorug06G0156300 Rorug06G0156400 Rorug06G0156500 Rorug06G0156600 Rorug06G0156700 Rorug06G0156800 Rorug06G0156900 Rorug06G0157000
rosa_samantha	Rh6AG267900 Rh6AG268100 Rh6AG268200 Rh6AG268400 Rh6AG268600 Rh6AG268700 Rh6AG268900 Rh6AG269100 Rh6BG270700 Rh6BG270900 Rh6BG271000 Rh6BG271200 Rh6BG271400 Rh6BG271500 Rh6CG270200 Rh6CG270400 Rh6CG270500 Rh6CG270800 Rh6CG270900 Rh6CG271000 Rh6CG271100 Rh6CG271300 Rh6DG263900 Rh6DG264100 Rh6DG264200 Rh6DG264400 Rh6DG264600 Rh6DG264800 Rh6DG265200
rosa_wichuraiana	Rw6G023210 Rw6G023220 Rw6G023230 Rw6G023240 Rw6G023250 Rw6G023260 Rw6G023270 Rw6G023280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	151, 613, 634
AcoI	YGGCCR	2 cut(s)	11, 747
AcsI	RAATTY	2 cut(s)	132, 510
AcuI	CTGAAG	5 cut(s)	176, 440, 454, 700, 740
AfiI	CCNNNNNNNGG	3 cut(s)	193, 422, 423
AflIII	ACRYGT	1 cut(s)	349
AjnI	CCWGG	1 cut(s)	546
AjuI	GAANNNNNNNTTGG	2 cut(s)	253, 285
AloI	GAACNNNNNNTCC	2 cut(s)	26, 58
Alw21I	GWGCWC	2 cut(s)	360, 499
Alw26I	GTCTC	2 cut(s)	202, 220
Alw44I	GTGCAC	1 cut(s)	495
AoxI	GGCC	5 cut(s)	11, 148, 252, 389, 747
ApaLI	GTGCAC	1 cut(s)	495
ApeKI	GCWGC	6 cut(s)	166, 175, 226, 280, 427, 615
ApoI	RAATTY	2 cut(s)	132, 510
ArsI	GACNNNNNNTTYG	2 cut(s)	26, 58
AspS9I	GGNCC	3 cut(s)	253, 389, 550
AsuHPI	GGTGA	4 cut(s)	199, 210, 579, 675
AvaII	GGWCC	1 cut(s)	550
BaeGI	GKGCMC	1 cut(s)	499
BalI	TGGCCA	1 cut(s)	749
BanII	GRGCYC	2 cut(s)	360, 442
BbsI	GAAGAC	1 cut(s)	688
Bbv12I	GWGCWC	2 cut(s)	360, 499
BbvI	GCAGC	6 cut(s)	162, 178, 213, 267, 439, 602
BccI	CCATC	2 cut(s)	450, 739
BceAI	ACGGC	1 cut(s)	261
BciT130I	CCWGG	1 cut(s)	548
BciVI	GTATCC	1 cut(s)	713
BcoDI	GTCTC	2 cut(s)	202, 220
BfaI	CTAG	3 cut(s)	125, 146, 607
BfmI	CTRYAG	2 cut(s)	176, 227
BfuI	GTATCC	1 cut(s)	713
BisI	GCNGC	8 cut(s)	151, 167, 176, 227, 281, 428, 613, 616
BlsI	GCNGC	8 cut(s)	152, 168, 177, 228, 282, 429, 614, 617
Bme1390I	CCNGG	1 cut(s)	548
Bme18I	GGWCC	1 cut(s)	550
BmgT120I	GGNCC	3 cut(s)	253, 389, 550
BmiI	GGNNCC	2 cut(s)	390, 776
BmrFI	CCNGG	1 cut(s)	548
BmrI	ACTGGG	1 cut(s)	767
BmsI	GCATC	2 cut(s)	450, 714
BmuI	ACTGGG	1 cut(s)	767
BpiI	GAAGAC	1 cut(s)	688
Bpu10I	CCTNAGC	1 cut(s)	384
BsaAI	YACGTR	1 cut(s)	339
BsaI	GGTCTC	1 cut(s)	202
BsaJI	CCNNGG	2 cut(s)	490, 629
BsaWI	WCCGGW	1 cut(s)	286
Bsc4I	CCNNNNNNNGG	3 cut(s)	193, 422, 423
Bse1I	ACTGG	3 cut(s)	210, 255, 762
BseBI	CCWGG	1 cut(s)	548
BseDI	CCNNGG	2 cut(s)	490, 629
BseLI	CCNNNNNNNGG	3 cut(s)	193, 422, 423
BseMII	CTCAG	2 cut(s)	101, 700
BseNI	ACTGG	3 cut(s)	210, 255, 762
BseSI	GKGCMC	1 cut(s)	499
BseXI	GCAGC	6 cut(s)	162, 178, 213, 267, 439, 602
BseYI	CCCAGC	1 cut(s)	324
BshFI	GGCC	5 cut(s)	13, 150, 254, 391, 749
BsiHKAI	GWGCWC	2 cut(s)	360, 499
BsiSI	CCGG	2 cut(s)	14, 287
BslI	CCNNNNNNNGG	3 cut(s)	193, 422, 423
BsmAI	GTCTC	2 cut(s)	202, 220
BsmI	GAATGC	2 cut(s)	485, 630
BsnI	GGCC	5 cut(s)	13, 150, 254, 391, 749
Bso31I	GGTCTC	1 cut(s)	202
Bsp1286I	GDGCHC	3 cut(s)	360, 442, 499
Bsp143I	GATC	2 cut(s)	689, 764
BspACI	CCGC	3 cut(s)	151, 613, 634
BspANI	GGCC	5 cut(s)	13, 150, 254, 391, 749
BspCNI	CTCAG	2 cut(s)	102, 701
BspHI	TCATGA	1 cut(s)	620
BspLI	GGNNCC	2 cut(s)	390, 776
BspMAI	CTGCAG	2 cut(s)	180, 231
BspQI	GCTCTTC	1 cut(s)	430
BspTNI	GGTCTC	1 cut(s)	202
BsrI	ACTGG	3 cut(s)	210, 255, 762
BssECI	CCNNGG	2 cut(s)	490, 629
BssMI	GATC	2 cut(s)	689, 764
BssT1I	CCWWGG	2 cut(s)	490, 629
Bst2UI	CCWGG	1 cut(s)	548
Bst4CI	ACNGT	3 cut(s)	141, 475, 687
Bst6I	CTCTTC	1 cut(s)	430
BstBAI	YACGTR	1 cut(s)	339
BstC8I	GCNNGC	1 cut(s)	60
BstDEI	CTNAG	4 cut(s)	110, 384, 709, 734
BstKTI	GATC	2 cut(s)	692, 767
BstMAI	GTCTC	2 cut(s)	202, 220
BstMBI	GATC	2 cut(s)	689, 764
BstMWI	GCNNNNNNNGC	5 cut(s)	115, 172, 175, 612, 724
BstNI	CCWGG	1 cut(s)	548
BstNSI	RCATGY	1 cut(s)	353
BstSCI	CCNGG	1 cut(s)	546
BstSFI	CTRYAG	2 cut(s)	176, 227
BstSLI	GKGCMC	1 cut(s)	499
BstV1I	GCAGC	6 cut(s)	162, 178, 213, 267, 439, 602
BstV2I	GAAGAC	1 cut(s)	688
BstXI	CCANNNNNNTGG	1 cut(s)	757
BsuI	GTATCC	1 cut(s)	713
BsuRI	GGCC	5 cut(s)	13, 150, 254, 391, 749
BtsIMutI	CAGTG	4 cut(s)	217, 248, 471, 692
Cac8I	GCNNGC	1 cut(s)	60
CciI	TCATGA	1 cut(s)	620
Cfr13I	GGNCC	3 cut(s)	253, 389, 550
CviAII	CATG	3 cut(s)	350, 621, 751
DdeI	CTNAG	4 cut(s)	110, 384, 709, 734
DpnI	GATC	2 cut(s)	691, 766
DpnII	GATC	2 cut(s)	689, 764
DraI	TTTAAA	1 cut(s)	54
EaeI	YGGCCR	2 cut(s)	11, 747
Eam1104I	CTCTTC	1 cut(s)	430
EarI	CTCTTC	1 cut(s)	430
EciI	GGCGGA	1 cut(s)	649
Ecl136II	GAGCTC	1 cut(s)	358
Eco130I	CCWWGG	2 cut(s)	490, 629
Eco24I	GRGCYC	2 cut(s)	360, 442
Eco31I	GGTCTC	1 cut(s)	202
Eco47I	GGWCC	1 cut(s)	550
Eco53kI	GAGCTC	1 cut(s)	358
Eco57I	CTGAAG	5 cut(s)	176, 440, 454, 700, 740
EcoICRI	GAGCTC	1 cut(s)	358
EcoRII	CCWGG	1 cut(s)	546
EcoT14I	CCWWGG	2 cut(s)	490, 629
EcoT38I	GRGCYC	2 cut(s)	360, 442
ErhI	CCWWGG	2 cut(s)	490, 629
FaeI	CATG	3 cut(s)	353, 624, 754
FaiI	YATR	8 cut(s)	78, 268, 305, 351, 458, 535, 622, 752
FatI	CATG	3 cut(s)	349, 620, 750
Fnu4HI	GCNGC	8 cut(s)	151, 167, 176, 227, 281, 428, 613, 616
FriOI	GRGCYC	2 cut(s)	360, 442
Fsp4HI	GCNGC	8 cut(s)	151, 167, 176, 227, 281, 428, 613, 616
FspBI	CTAG	3 cut(s)	125, 146, 607
GluI	GCNGC	8 cut(s)	151, 167, 176, 227, 281, 428, 613, 616
GsaI	CCCAGC	1 cut(s)	328
HaeIII	GGCC	5 cut(s)	13, 150, 254, 391, 749
HapII	CCGG	2 cut(s)	14, 287
Hin1II	CATG	3 cut(s)	353, 624, 754
HindIII	AAGCTT	1 cut(s)	238
HinfI	GANTC	5 cut(s)	233, 516, 582, 639, 694
HpaII	CCGG	2 cut(s)	14, 287
HphI	GGTGA	4 cut(s)	199, 210, 579, 675
Hpy166II	GTNNAC	2 cut(s)	497, 566
Hpy188I	TCNGA	3 cut(s)	47, 434, 710
Hpy188III	TCNNGA	4 cut(s)	378, 403, 621, 643
Hpy8I	GTNNAC	2 cut(s)	497, 566
Hpy99I	CGWCG	1 cut(s)	483
HpyAV	CCTTC	5 cut(s)	415, 522, 600, 660, 664
HpyCH4III	ACNGT	3 cut(s)	141, 475, 687
HpyCH4IV	ACGT	1 cut(s)	338
HpyCH4V	TGCA	6 cut(s)	118, 178, 229, 307, 319, 497
HpyF10VI	GCNNNNNNNGC	5 cut(s)	115, 172, 175, 612, 724
HpyF3I	CTNAG	4 cut(s)	110, 384, 709, 734
HpySE526I	ACGT	1 cut(s)	338
Hsp92II	CATG	3 cut(s)	353, 624, 754
Kzo9I	GATC	2 cut(s)	689, 764
LguI	GCTCTTC	1 cut(s)	430
LmnI	GCTCC	2 cut(s)	355, 774
Lsp1109I	GCAGC	6 cut(s)	162, 178, 213, 267, 439, 602
LweI	GCATC	2 cut(s)	450, 714
MaeI	CTAG	3 cut(s)	125, 146, 607
MaeII	ACGT	1 cut(s)	338
MaeIII	GTNAC	4 cut(s)	141, 273, 339, 361
MalI	GATC	2 cut(s)	691, 766
MboI	GATC	2 cut(s)	689, 764
MboII	GAAGA	6 cut(s)	273, 447, 612, 693, 733, 774
MhlI	GDGCHC	3 cut(s)	360, 442, 499
MlsI	TGGCCA	1 cut(s)	749
MluCI	AATT	2 cut(s)	132, 510
MluNI	TGGCCA	1 cut(s)	749
MlyI	GAGTC	3 cut(s)	242, 525, 688
MmeI	TCCRAC	2 cut(s)	12, 336
MnlI	CCTC	7 cut(s)	12, 21, 91, 294, 390, 708, 716
Mox20I	TGGCCA	1 cut(s)	749
MscI	TGGCCA	1 cut(s)	749
MseI	TTAA	3 cut(s)	53, 92, 780
Msp20I	TGGCCA	1 cut(s)	749
MspA1I	CMGCKG	1 cut(s)	615
MspI	CCGG	2 cut(s)	14, 287
MspR9I	CCNGG	1 cut(s)	548
Mva1269I	GAATGC	2 cut(s)	485, 630
MvaI	CCWGG	1 cut(s)	548
MwoI	GCNNNNNNNGC	5 cut(s)	115, 172, 175, 612, 724
NdeII	GATC	2 cut(s)	689, 764
NlaIII	CATG	3 cut(s)	353, 624, 754
NlaIV	GGNNCC	2 cut(s)	390, 776
NspI	RCATGY	1 cut(s)	353
PagI	TCATGA	1 cut(s)	620
PciI	ACATGT	1 cut(s)	349
PciSI	GCTCTTC	1 cut(s)	430
PctI	GAATGC	2 cut(s)	485, 630
PfeI	GAWTC	2 cut(s)	582, 639
PkrI	GCNGC	8 cut(s)	152, 168, 177, 228, 282, 429, 614, 617
PleI	GAGTC	3 cut(s)	241, 524, 688
PpsI	GAGTC	3 cut(s)	241, 524, 688
Ppu21I	YACGTR	1 cut(s)	339
PscI	ACATGT	1 cut(s)	349
Psp124BI	GAGCTC	1 cut(s)	360
Psp6I	CCWGG	1 cut(s)	546
PspFI	CCCAGC	1 cut(s)	324
PspGI	CCWGG	1 cut(s)	546
PspN4I	GGNNCC	2 cut(s)	390, 776
PspPI	GGNCC	3 cut(s)	253, 389, 550
PstI	CTGCAG	2 cut(s)	180, 231
SacI	GAGCTC	1 cut(s)	360
SapI	GCTCTTC	1 cut(s)	430
SaqAI	TTAA	3 cut(s)	53, 92, 780
SatI	GCNGC	8 cut(s)	151, 167, 176, 227, 281, 428, 613, 616
Sau3AI	GATC	2 cut(s)	689, 764
Sau96I	GGNCC	3 cut(s)	253, 389, 550
SchI	GAGTC	3 cut(s)	242, 525, 688
ScrFI	CCNGG	1 cut(s)	548
SduI	GDGCHC	3 cut(s)	360, 442, 499
SfaNI	GCATC	2 cut(s)	450, 714
SfcI	CTRYAG	2 cut(s)	176, 227
SinI	GGWCC	1 cut(s)	550
Sse9I	AATT	2 cut(s)	132, 510
SsiI	CCGC	3 cut(s)	151, 613, 634
SspMI	CTAG	3 cut(s)	125, 146, 607
SstI	GAGCTC	1 cut(s)	360
StyD4I	CCNGG	1 cut(s)	546
StyI	CCWWGG	2 cut(s)	490, 629
TaaI	ACNGT	3 cut(s)	141, 475, 687
TaiI	ACGT	1 cut(s)	341
TaqI	TCGA	1 cut(s)	692
TasI	AATT	2 cut(s)	132, 510
TauI	GCSGC	2 cut(s)	153, 615
TfiI	GAWTC	2 cut(s)	582, 639
Tru1I	TTAA	3 cut(s)	53, 92, 780
Tru9I	TTAA	3 cut(s)	53, 92, 780
TscAI	CASTG	4 cut(s)	217, 255, 478, 692
TseI	GCWGC	6 cut(s)	166, 175, 226, 280, 427, 615
TspDTI	ATGAA	1 cut(s)	637
TspRI	CASTG	4 cut(s)	217, 255, 478, 692
VneI	GTGCAC	1 cut(s)	495
VpaK11BI	GGWCC	1 cut(s)	550
XapI	RAATTY	2 cut(s)	132, 510
XceI	RCATGY	1 cut(s)	353
XcmI	CCANNNNNNNNNTGG	1 cut(s)	91
XspI	CTAG	3 cut(s)	125, 146, 607

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.