Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0000313

Physical Location & Seq

Genomic Coordinates Forward (+)

15622464 .. 15623453

Gene Structure 990 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g18240.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGGACATATGTGGAACAGCATATGATGTGGCTGGAGAGATTGTAGACGTTGGACAAGGAGTCAAAAAGTTCAAAAAGGGTGACAAAGTCGTGGCGTTACTCCACCTTTTGGATGGAGGCGGACTGGCCGAGTTTGCTACAGCTAGTGAGAAATTGACAGTTGCTAGGCCTCAAGAAGTTTCAGCAGCTGAAGGTGCAGGCTTACCTACTTGTGGTCTCACAGCTCACCAGGCTCTAACACAAGCTGGAGAGATTGAGCTTGATGGAACTGACCAGCTGAAGAGCATACTCATTACGGGTGCTTCTGGTGGTGTTGGCCATTTTGCAGTCCAACTAGCAAAGCTGGCGAACACTCATGTGACAGTGACTTGTGGAGCTCGTAACATTGAATTTGTCAAGAGATTGGGGGCTGACGAAGTTCTTGACTACAGGACCCCAGATGGGGAAGCTTTAAGGAGTCCATCTGGTCAAAAGTATGATTTGGTGATTCATTGTGCACCTATTGGCATTCCATGGTCAGTGTTTGAGCCAAATTTGAATCCACACAGTAAAGTAATAGACATTACTCCCAGTGGAAGTGCCTTTATTACTTTTGTTCGACACACAGTAACTTTCTCCAAGAAGAAGCTGGTGCCTATGATCATAAATGCCAAGGGTGAGAACCTTGATTATCTTTTGAAGTTGGTGAAAGAAGGAAAGCTCAAGACAGTGATCGACTCAAAGTATTCTCTGAGCAAGGCTGAAGACGCCTGGGCTAAAAGTATGGATGGTCATGCTACTGGGAAGATCATTATAGAGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N_2

Protein Analysis

268

Amino Acids

28.32

Weight (kDa)

6.45

Isoelectric Point (pI)

21.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_zinc_N	PF00107	104 - 167	2.8e-10	Zinc-binding dehydrogenase
ADH_zinc_N_2	PF13602	135 - 265	5.7e-21	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13010
fragaria_vesca	FvH4_2g18240 FvH4_2g18280 FvH4_2g18310 FvH4_2g18320 FvH4_2g18330 FvH4_2g18340 FvH4_2g18350
malus_domestica	MD05G1166800.v1.1 MD05G1167200.v1.1 MD05G1167300.v1.1 MD05G1167400.v1.1 MD05G1167600.v1.1 MD05G1168000.v1.1 MD05G1168200.v1.1 MD05G1168400.v1.1 MD05G1168600.v1.1 MD05G1168700.v1.1 MD05G1168800.v1.1 MD10G1156900.v1.1 MD10G1157000.v1.1 MD10G1157100.v1.1 MD10G1157200.v1.1
prunus_persica	Prupe.8G195100_v2.0.a1 Prupe.8G195100_v2.0.a1 Prupe.8G195300_v2.0.a1 Prupe.8G195600_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G196000_v2.0.a1 Prupe.8G196000_v2.0.a1
pyrus_communis	pycom05g15560 pycom05g15600 pycom05g15610 pycom05g15620 pycom05g15630 pycom10g13550 pycom10g13570
rosa_chinensis	RchiOBHm_Chr6g0283611 RchiOBHm_Chr6g0283631 RchiOBHm_Chr6g0283641 RchiOBHm_Chr6g0283661 RchiOBHm_Chr6g0283681 RchiOBHm_Chr6g0283691 RchiOBHm_Chr6g0283701 RchiOBHm_Chr6g0283711 RchiOBHm_Chr6g0283721
rosa_laevigata	RLG00000012804 RLG00000012807 RLG00000012811
rosa_multiflora	Rmu_co8263921.1_g000001 Rmu_sc0001521.1_g000009 Rmu_sc0002906.1_g000002 Rmu_sc0002906.1_g000011 Rmu_sc0002906.1_g000013 Rmu_sc0005719.1_g000016 Rmu_sc0005719.1_g000022 Rmu_sc0029460.1_g000001
rosa_roxburghii	Rroxscaffold_7G00185240 Rroxscaffold_7G00185250 Rroxscaffold_7G00185270 Rroxscaffold_7G00185280 Rroxscaffold_7G00185290 Rroxscaffold_7G00185330 Rroxscaffold_7G00185350
rosa_rugosa	Rorug06G0156100 Rorug06G0156300 Rorug06G0156400 Rorug06G0156500 Rorug06G0156600 Rorug06G0156700 Rorug06G0156800 Rorug06G0156900 Rorug06G0157000
rosa_samantha	Rh6AG267900 Rh6AG268100 Rh6AG268200 Rh6AG268400 Rh6AG268600 Rh6AG268700 Rh6AG268900 Rh6AG269100 Rh6BG270700 Rh6BG270900 Rh6BG271000 Rh6BG271200 Rh6BG271400 Rh6BG271500 Rh6CG270200 Rh6CG270400 Rh6CG270500 Rh6CG270800 Rh6CG270900 Rh6CG271000 Rh6CG271100 Rh6CG271300 Rh6DG263900 Rh6DG264100 Rh6DG264200 Rh6DG264400 Rh6DG264600 Rh6DG264800 Rh6DG265200
rosa_wichuraiana	Rw6G023210 Rw6G023220 Rw6G023230 Rw6G023240 Rw6G023250 Rw6G023260 Rw6G023270 Rw6G023280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	631
AccB7I	CCANNNNNTGG	1 cut(s)	109
AccI	GTMKAC	1 cut(s)	45
AciI	CCGC	1 cut(s)	120
AcoI	YGGCCR	2 cut(s)	126, 316
AcsI	RAATTY	2 cut(s)	389, 532
AcuI	CTGAAG	3 cut(s)	210, 299, 762
AcyI	GRCGYC	1 cut(s)	747
AfiI	CCNNNNNNNGG	4 cut(s)	109, 212, 441, 442
AgsI	TTSAA	4 cut(s)	73, 389, 538, 679
AhdI	GACNNNNNGTC	1 cut(s)	59
AjnI	CCWGG	2 cut(s)	228, 749
AleI	CACNNNNGTG	1 cut(s)	356
Alw21I	GWGCWC	2 cut(s)	379, 499
Alw26I	GTCTC	1 cut(s)	221
Alw44I	GTGCAC	1 cut(s)	495
AlwNI	CAGNNNCTG	1 cut(s)	188
AoxI	GGCC	3 cut(s)	126, 167, 316
ApaLI	GTGCAC	1 cut(s)	495
ApeKI	GCWGC	1 cut(s)	185
ApoI	RAATTY	2 cut(s)	389, 532
AspS9I	GGNCC	1 cut(s)	432
AsuHPI	GGTGA	5 cut(s)	92, 218, 496, 668, 697
AvaII	GGWCC	1 cut(s)	432
BaeGI	GKGCMC	1 cut(s)	499
BalI	TGGCCA	1 cut(s)	318
BanI	GGYRCC	1 cut(s)	631
BanII	GRGCYC	1 cut(s)	379
BbsI	GAAGAC	1 cut(s)	750
Bbv12I	GWGCWC	2 cut(s)	379, 499
BbvI	GCAGC	1 cut(s)	197
BccI	CCATC	5 cut(s)	107, 257, 434, 469, 761
BciT130I	CCWGG	2 cut(s)	230, 751
BclI	TGATCA	1 cut(s)	639
BcoDI	GTCTC	1 cut(s)	221
BfaI	CTAG	3 cut(s)	144, 165, 335
BfmI	CTRYAG	2 cut(s)	138, 427
BisI	GCNGC	1 cut(s)	186
BlsI	GCNGC	1 cut(s)	187
Bme1390I	CCNGG	2 cut(s)	230, 751
Bme18I	GGWCC	1 cut(s)	432
BmeRI	GACNNNNNGTC	1 cut(s)	59
BmgT120I	GGNCC	1 cut(s)	432
BmiI	GGNNCC	2 cut(s)	434, 633
BmrFI	CCNGG	2 cut(s)	230, 751
BmrI	ACTGGG	2 cut(s)	564, 789
BmuI	ACTGGG	2 cut(s)	564, 789
BpiI	GAAGAC	1 cut(s)	750
BpmI	CTGGAG	2 cut(s)	54, 267
BpuEI	CTTGAG	2 cut(s)	156, 686
BsaHI	GRCGYC	1 cut(s)	747
BsaI	GGTCTC	1 cut(s)	221
BsaJI	CCNNGG	3 cut(s)	512, 651, 750
BsaXI	ACNNNNNCTCC	2 cut(s)	27, 57
Bsc4I	CCNNNNNNNGG	4 cut(s)	109, 212, 441, 442
Bse1I	ACTGG	3 cut(s)	129, 570, 784
BseBI	CCWGG	2 cut(s)	230, 751
BseDI	CCNNGG	3 cut(s)	512, 651, 750
BseGI	GGATG	2 cut(s)	118, 772
BseLI	CCNNNNNNNGG	4 cut(s)	109, 212, 441, 442
BseMII	CTCAG	1 cut(s)	722
BseNI	ACTGG	3 cut(s)	129, 570, 784
BseSI	GKGCMC	1 cut(s)	499
BseXI	GCAGC	1 cut(s)	197
BsgI	GTGCAG	1 cut(s)	216
BshFI	GGCC	3 cut(s)	128, 169, 318
BshNI	GGYRCC	1 cut(s)	631
BsiHKAI	GWGCWC	2 cut(s)	379, 499
BslI	CCNNNNNNNGG	4 cut(s)	109, 212, 441, 442
BsmAI	GTCTC	1 cut(s)	221
BsmI	GAATGC	1 cut(s)	507
BsnI	GGCC	3 cut(s)	128, 169, 318
Bso31I	GGTCTC	1 cut(s)	221
Bsp1286I	GDGCHC	2 cut(s)	379, 499
Bsp143I	GATC	3 cut(s)	639, 711, 786
Bsp19I	CCATGG	1 cut(s)	512
BspACI	CCGC	1 cut(s)	120
BspANI	GGCC	3 cut(s)	128, 169, 318
BspCNI	CTCAG	1 cut(s)	723
BspLI	GGNNCC	2 cut(s)	434, 633
BspQI	GCTCTTC	1 cut(s)	275
BspT107I	GGYRCC	1 cut(s)	631
BspTNI	GGTCTC	1 cut(s)	221
BsrI	ACTGG	3 cut(s)	129, 570, 784
BssECI	CCNNGG	3 cut(s)	512, 651, 750
BssMI	GATC	3 cut(s)	639, 711, 786
BssNI	GRCGYC	1 cut(s)	747
BssT1I	CCWWGG	2 cut(s)	512, 651
Bst2UI	CCWGG	2 cut(s)	230, 751
Bst4CI	ACNGT	5 cut(s)	160, 364, 548, 607, 709
Bst6I	CTCTTC	1 cut(s)	275
BstACI	GRCGYC	1 cut(s)	747
BstC8I	GCNNGC	2 cut(s)	199, 345
BstDEI	CTNAG	1 cut(s)	731
BstDSI	CCRYGG	1 cut(s)	512
BstF5I	GGATG	2 cut(s)	118, 772
BstKTI	GATC	3 cut(s)	642, 714, 789
BstMAI	GTCTC	1 cut(s)	221
BstMBI	GATC	3 cut(s)	639, 711, 786
BstMWI	GCNNNNNNNGC	5 cut(s)	134, 194, 230, 344, 746
BstNI	CCWGG	2 cut(s)	230, 751
BstSCI	CCNGG	2 cut(s)	228, 749
BstSFI	CTRYAG	2 cut(s)	138, 427
BstSLI	GKGCMC	1 cut(s)	499
BstV1I	GCAGC	1 cut(s)	197
BstV2I	GAAGAC	1 cut(s)	750
BsuRI	GGCC	3 cut(s)	128, 169, 318
BtgI	CCRYGG	1 cut(s)	512
BtsCI	GGATG	2 cut(s)	118, 772
BtsIMutI	CAGTG	4 cut(s)	369, 525, 577, 714
Cac8I	GCNNGC	2 cut(s)	199, 345
CaiI	CAGNNNCTG	1 cut(s)	188
Cfr13I	GGNCC	1 cut(s)	432
CseI	GACGC	1 cut(s)	755
CviAII	CATG	3 cut(s)	356, 513, 773
DdeI	CTNAG	1 cut(s)	731
DpnI	GATC	3 cut(s)	641, 713, 788
DpnII	GATC	3 cut(s)	639, 711, 786
DriI	GACNNNNNGTC	1 cut(s)	59
EaeI	YGGCCR	2 cut(s)	126, 316
Eam1104I	CTCTTC	1 cut(s)	275
Eam1105I	GACNNNNNGTC	1 cut(s)	59
EarI	CTCTTC	1 cut(s)	275
EciI	GGCGGA	1 cut(s)	135
Ecl136II	GAGCTC	1 cut(s)	377
Eco130I	CCWWGG	2 cut(s)	512, 651
Eco147I	AGGCCT	1 cut(s)	169
Eco24I	GRGCYC	1 cut(s)	379
Eco31I	GGTCTC	1 cut(s)	221
Eco47I	GGWCC	1 cut(s)	432
Eco53kI	GAGCTC	1 cut(s)	377
Eco57I	CTGAAG	3 cut(s)	210, 299, 762
EcoICRI	GAGCTC	1 cut(s)	377
EcoO109I	RGGNCCY	1 cut(s)	432
EcoRII	CCWGG	2 cut(s)	228, 749
EcoT14I	CCWWGG	2 cut(s)	512, 651
EcoT38I	GRGCYC	1 cut(s)	379
ErhI	CCWWGG	2 cut(s)	512, 651
FaeI	CATG	3 cut(s)	359, 516, 776
FatI	CATG	3 cut(s)	355, 512, 772
FauNDI	CATATG	2 cut(s)	8, 22
FbaI	TGATCA	1 cut(s)	639
FblI	GTMKAC	1 cut(s)	45
Fnu4HI	GCNGC	1 cut(s)	186
FokI	GGATG	2 cut(s)	125, 779
FriOI	GRGCYC	1 cut(s)	379
Fsp4HI	GCNGC	1 cut(s)	186
FspBI	CTAG	3 cut(s)	144, 165, 335
GluI	GCNGC	1 cut(s)	186
GsuI	CTGGAG	2 cut(s)	54, 267
HaeIII	GGCC	3 cut(s)	128, 169, 318
HgaI	GACGC	1 cut(s)	755
Hin1I	GRCGYC	1 cut(s)	747
Hin1II	CATG	3 cut(s)	359, 516, 776
HindIII	AAGCTT	1 cut(s)	447
HinfI	GANTC	5 cut(s)	60, 457, 487, 538, 716
HphI	GGTGA	5 cut(s)	92, 218, 496, 668, 697
Hpy166II	GTNNAC	2 cut(s)	46, 497
Hpy188I	TCNGA	1 cut(s)	732
Hpy188III	TCNNGA	4 cut(s)	173, 397, 422, 703
Hpy8I	GTNNAC	2 cut(s)	46, 497
HpyAV	CCTTC	2 cut(s)	185, 686
HpyCH4III	ACNGT	5 cut(s)	160, 364, 548, 607, 709
HpyCH4IV	ACGT	1 cut(s)	48
HpyCH4V	TGCA	3 cut(s)	197, 326, 497
HpyF10VI	GCNNNNNNNGC	5 cut(s)	134, 194, 230, 344, 746
HpyF3I	CTNAG	1 cut(s)	731
HpySE526I	ACGT	1 cut(s)	48
Hsp92I	GRCGYC	1 cut(s)	747
Hsp92II	CATG	3 cut(s)	359, 516, 776
Ksp22I	TGATCA	1 cut(s)	639
Kzo9I	GATC	3 cut(s)	639, 711, 786
LguI	GCTCTTC	1 cut(s)	275
LmnI	GCTCC	1 cut(s)	374
Lsp1109I	GCAGC	1 cut(s)	197
MaeI	CTAG	3 cut(s)	144, 165, 335
MaeII	ACGT	1 cut(s)	48
MaeIII	GTNAC	6 cut(s)	80, 96, 358, 364, 380, 607
MalI	GATC	3 cut(s)	641, 713, 788
MboI	GATC	3 cut(s)	639, 711, 786
MboII	GAAGA	4 cut(s)	292, 634, 755, 796
MhlI	GDGCHC	2 cut(s)	379, 499
MlsI	TGGCCA	1 cut(s)	318
MluCI	AATT	3 cut(s)	152, 389, 532
MluNI	TGGCCA	1 cut(s)	318
MlyI	GAGTC	3 cut(s)	69, 466, 710
MmeI	TCCRAC	2 cut(s)	31, 355
MnlI	CCTC	3 cut(s)	110, 180, 790
Mox20I	TGGCCA	1 cut(s)	318
MscI	TGGCCA	1 cut(s)	318
MseI	TTAA	1 cut(s)	452
MslI	CAYNNNNRTG	1 cut(s)	356
Msp20I	TGGCCA	1 cut(s)	318
MspA1I	CMGCKG	2 cut(s)	188, 277
MspR9I	CCNGG	2 cut(s)	230, 751
Mva1269I	GAATGC	1 cut(s)	507
MvaI	CCWGG	2 cut(s)	230, 751
MwoI	GCNNNNNNNGC	5 cut(s)	134, 194, 230, 344, 746
NcoI	CCATGG	1 cut(s)	512
NdeI	CATATG	2 cut(s)	8, 22
NdeII	GATC	3 cut(s)	639, 711, 786
NlaIII	CATG	3 cut(s)	359, 516, 776
NlaIV	GGNNCC	2 cut(s)	434, 633
NmeAIII	GCCGAG	1 cut(s)	154
NmuCI	GTSAC	3 cut(s)	80, 358, 364
OliI	CACNNNNGTG	1 cut(s)	356
PceI	AGGCCT	1 cut(s)	169
PciSI	GCTCTTC	1 cut(s)	275
PctI	GAATGC	1 cut(s)	507
PfeI	GAWTC	2 cut(s)	487, 538
PflFI	GACNNNGTC	1 cut(s)	86
PflMI	CCANNNNNTGG	1 cut(s)	109
PkrI	GCNGC	1 cut(s)	187
PleI	GAGTC	3 cut(s)	68, 465, 710
PpsI	GAGTC	3 cut(s)	68, 465, 710
PpuMI	RGGWCCY	1 cut(s)	432
Psp124BI	GAGCTC	1 cut(s)	379
Psp5II	RGGWCCY	1 cut(s)	432
Psp6I	CCWGG	2 cut(s)	228, 749
PspGI	CCWGG	2 cut(s)	228, 749
PspN4I	GGNNCC	2 cut(s)	434, 633
PspPI	GGNCC	1 cut(s)	432
PspPPI	RGGWCCY	1 cut(s)	432
PstNI	CAGNNNCTG	1 cut(s)	188
PsyI	GACNNNGTC	1 cut(s)	86
PvuII	CAGCTG	2 cut(s)	188, 277
RseI	CAYNNNNRTG	1 cut(s)	356
SacI	GAGCTC	1 cut(s)	379
SapI	GCTCTTC	1 cut(s)	275
SaqAI	TTAA	1 cut(s)	452
SatI	GCNGC	1 cut(s)	186
Sau3AI	GATC	3 cut(s)	639, 711, 786
Sau96I	GGNCC	1 cut(s)	432
SchI	GAGTC	3 cut(s)	69, 466, 710
ScrFI	CCNGG	2 cut(s)	230, 751
SduI	GDGCHC	2 cut(s)	379, 499
SfcI	CTRYAG	2 cut(s)	138, 427
SinI	GGWCC	1 cut(s)	432
SmiMI	CAYNNNNRTG	1 cut(s)	356
SmlI	CTYRAG	2 cut(s)	171, 701
SmoI	CTYRAG	2 cut(s)	171, 701
Sse9I	AATT	3 cut(s)	152, 389, 532
SseBI	AGGCCT	1 cut(s)	169
SsiI	CCGC	1 cut(s)	120
SspMI	CTAG	3 cut(s)	144, 165, 335
SstI	GAGCTC	1 cut(s)	379
StuI	AGGCCT	1 cut(s)	169
StyD4I	CCNGG	2 cut(s)	228, 749
StyI	CCWWGG	2 cut(s)	512, 651
TaaI	ACNGT	5 cut(s)	160, 364, 548, 607, 709
TaiI	ACGT	1 cut(s)	51
TaqI	TCGA	2 cut(s)	598, 714
TasI	AATT	3 cut(s)	152, 389, 532
TfiI	GAWTC	2 cut(s)	487, 538
Tru1I	TTAA	1 cut(s)	452
Tru9I	TTAA	1 cut(s)	452
TscAI	CASTG	4 cut(s)	369, 525, 577, 714
TseFI	GTSAC	3 cut(s)	80, 358, 364
TseI	GCWGC	1 cut(s)	185
Tsp45I	GTSAC	3 cut(s)	80, 358, 364
TspDTI	ATGAA	1 cut(s)	479
TspRI	CASTG	4 cut(s)	369, 525, 577, 714
Tth111I	GACNNNGTC	1 cut(s)	86
Van91I	CCANNNNNTGG	1 cut(s)	109
VneI	GTGCAC	1 cut(s)	495
VpaK11BI	GGWCC	1 cut(s)	432
XapI	RAATTY	2 cut(s)	389, 532
XcmI	CCANNNNNNNNNTGG	2 cut(s)	110, 625
XmiI	GTMKAC	1 cut(s)	45
XspI	CTAG	3 cut(s)	144, 165, 335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.