Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0000313

Physical Location & Seq

Genomic Coordinates Forward (+)

22519924 .. 22520412

Gene Structure 489 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0157000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 195 bp

ATGGGTTTTCGGTTACCTGGAATTGGTAACACCAAGAGAAGTCTTACTAGATCTTTATCTGCTTCAAAGACTTTAGATATGCCAAAAGGCTATTTTGCAGTTTATGTTGGGGAGAGCCAGAAGAAGCGGTTTGTGATTCCAATATCATACTTGAATGAGCCTATATATGTTCCAGGATTTGTTGAGTTAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N_2

Protein Analysis

64

Amino Acids

7.16

Weight (kDa)

9.9

Isoelectric Point (pI)

44.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_inducible	PF02519	18 - 55	1.4e-09	Auxin responsive protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13010
fragaria_vesca	FvH4_2g18240 FvH4_2g18280 FvH4_2g18310 FvH4_2g18320 FvH4_2g18330 FvH4_2g18340 FvH4_2g18350
malus_domestica	MD05G1166800.v1.1 MD05G1167200.v1.1 MD05G1167300.v1.1 MD05G1167400.v1.1 MD05G1167600.v1.1 MD05G1168000.v1.1 MD05G1168200.v1.1 MD05G1168400.v1.1 MD05G1168600.v1.1 MD05G1168700.v1.1 MD05G1168800.v1.1 MD10G1156900.v1.1 MD10G1157000.v1.1 MD10G1157100.v1.1 MD10G1157200.v1.1
prunus_persica	Prupe.8G195100_v2.0.a1 Prupe.8G195100_v2.0.a1 Prupe.8G195300_v2.0.a1 Prupe.8G195600_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G196000_v2.0.a1 Prupe.8G196000_v2.0.a1
pyrus_communis	pycom05g15560 pycom05g15600 pycom05g15610 pycom05g15620 pycom05g15630 pycom10g13550 pycom10g13570
rosa_chinensis	RchiOBHm_Chr6g0283611 RchiOBHm_Chr6g0283631 RchiOBHm_Chr6g0283641 RchiOBHm_Chr6g0283661 RchiOBHm_Chr6g0283681 RchiOBHm_Chr6g0283691 RchiOBHm_Chr6g0283701 RchiOBHm_Chr6g0283711 RchiOBHm_Chr6g0283721
rosa_laevigata	RLG00000012804 RLG00000012807 RLG00000012811
rosa_multiflora	Rmu_co8263921.1_g000001 Rmu_sc0001521.1_g000009 Rmu_sc0002906.1_g000002 Rmu_sc0002906.1_g000011 Rmu_sc0002906.1_g000013 Rmu_sc0005719.1_g000016 Rmu_sc0005719.1_g000022 Rmu_sc0029460.1_g000001
rosa_roxburghii	Rroxscaffold_7G00185240 Rroxscaffold_7G00185250 Rroxscaffold_7G00185270 Rroxscaffold_7G00185280 Rroxscaffold_7G00185290 Rroxscaffold_7G00185330 Rroxscaffold_7G00185350
rosa_rugosa	Rorug06G0156100 Rorug06G0156300 Rorug06G0156400 Rorug06G0156500 Rorug06G0156600 Rorug06G0156700 Rorug06G0156800 Rorug06G0156900 Rorug06G0157000
rosa_samantha	Rh6AG267900 Rh6AG268100 Rh6AG268200 Rh6AG268400 Rh6AG268600 Rh6AG268700 Rh6AG268900 Rh6AG269100 Rh6BG270700 Rh6BG270900 Rh6BG271000 Rh6BG271200 Rh6BG271400 Rh6BG271500 Rh6CG270200 Rh6CG270400 Rh6CG270500 Rh6CG270800 Rh6CG270900 Rh6CG271000 Rh6CG271100 Rh6CG271300 Rh6DG263900 Rh6DG264100 Rh6DG264200 Rh6DG264400 Rh6DG264600 Rh6DG264800 Rh6DG265200
rosa_wichuraiana	Rw6G023210 Rw6G023220 Rw6G023230 Rw6G023240 Rw6G023250 Rw6G023260 Rw6G023270 Rw6G023280

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	127
AfiI	CCNNNNNNNGG	1 cut(s)	23
AgsI	TTSAA	2 cut(s)	66, 154
AjnI	CCWGG	2 cut(s)	16, 172
AluBI	AGCT	1 cut(s)	192
AluI	AGCT	1 cut(s)	192
BciT130I	CCWGG	2 cut(s)	18, 174
BfaI	CTAG	1 cut(s)	48
BglII	AGATCT	1 cut(s)	50
Bme1390I	CCNGG	2 cut(s)	18, 174
BmrFI	CCNGG	2 cut(s)	18, 174
BsaBI	GATNNNNATC	1 cut(s)	55
Bsc4I	CCNNNNNNNGG	1 cut(s)	23
Bse8I	GATNNNNATC	1 cut(s)	55
BseBI	CCWGG	2 cut(s)	18, 174
BseJI	GATNNNNATC	1 cut(s)	55
BseLI	CCNNNNNNNGG	1 cut(s)	23
BslI	CCNNNNNNNGG	1 cut(s)	23
Bsp143I	GATC	1 cut(s)	50
BspACI	CCGC	1 cut(s)	127
BssMI	GATC	1 cut(s)	50
Bst2UI	CCWGG	2 cut(s)	18, 174
BstEII	GGTNACC	1 cut(s)	12
BstKTI	GATC	1 cut(s)	53
BstMBI	GATC	1 cut(s)	50
BstNI	CCWGG	2 cut(s)	18, 174
BstPI	GGTNACC	1 cut(s)	12
BstSCI	CCNGG	2 cut(s)	16, 172
BstX2I	RGATCY	1 cut(s)	50
BstYI	RGATCY	1 cut(s)	50
CviJI	RGCY	4 cut(s)	90, 117, 160, 192
CviKI_1	RGCY	4 cut(s)	90, 117, 160, 192
DpnI	GATC	1 cut(s)	52
DpnII	GATC	1 cut(s)	50
Eco91I	GGTNACC	1 cut(s)	12
EcoO65I	GGTNACC	1 cut(s)	12
EcoRII	CCWGG	2 cut(s)	16, 172
FaiI	YATR	6 cut(s)	80, 105, 148, 164, 166, 168
FspBI	CTAG	1 cut(s)	48
HinfI	GANTC	1 cut(s)	136
HpyCH4V	TGCA	1 cut(s)	98
Kzo9I	GATC	1 cut(s)	50
LpnPI	CCDG	5 cut(s)	3, 30, 131, 159, 186
MaeI	CTAG	1 cut(s)	48
MaeIII	GTNAC	2 cut(s)	12, 26
MalI	GATC	1 cut(s)	52
MboI	GATC	1 cut(s)	50
MboII	GAAGA	1 cut(s)	133
MflI	RGATCY	1 cut(s)	50
MluCI	AATT	1 cut(s)	21
MseI	TTAA	1 cut(s)	188
MspR9I	CCNGG	2 cut(s)	18, 174
MvaI	CCWGG	2 cut(s)	18, 174
NdeII	GATC	1 cut(s)	50
PfeI	GAWTC	1 cut(s)	136
PfoI	TCCNGGA	1 cut(s)	172
Psp6I	CCWGG	2 cut(s)	16, 172
PspEI	GGTNACC	1 cut(s)	12
PspGI	CCWGG	2 cut(s)	16, 172
PsuI	RGATCY	1 cut(s)	50
SaqAI	TTAA	1 cut(s)	188
Sau3AI	GATC	1 cut(s)	50
ScrFI	CCNGG	2 cut(s)	18, 174
SetI	ASST	2 cut(s)	19, 194
SgeI	CNNG	8 cut(s)	29, 30, 46, 60, 130, 163, 185, 186
Sse9I	AATT	1 cut(s)	21
SsiI	CCGC	1 cut(s)	127
SspMI	CTAG	1 cut(s)	48
StyD4I	CCNGG	2 cut(s)	16, 172
TasI	AATT	1 cut(s)	21
TfiI	GAWTC	1 cut(s)	136
Tru1I	TTAA	1 cut(s)	188
Tru9I	TTAA	1 cut(s)	188
XspI	CTAG	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.