Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002906.1

Orthogroup ID

OG0000313

Physical Location & Seq

Genomic Coordinates Reverse (-)

35741 .. 37711

Gene Structure 1971 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002906.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

atgtcgaagaagcttatgcatgctgttcagtacgacggctatggtggaggaacttctggtttaaagcatgtcgaggttccaatcccaactccaataaaaaatgaggttctgctgaaagtggaagcagctagtctaaatccagttgattggaaaattcagaaaggccagctgcggcctcttttcccattgaatttccctctaatacctctaacggacgtatctggagagattgtagaggttggcggaggagtcaaaaagttcaaagtgggagacaaagttgttataatgctcaaccctttttacggaggtgggttggctgagtttgcaatctctaataagagactgatggttactaggccacctgaagttagcgcagctgaaggtgcgggcttacctattgctggtctcacagctcaccaggctgtcacacaagctgcagggatcaagctcgatggcactggccagaagcagaagaacatattggtcactgcggcctctggtggagtcggtcactacgcagtccaactagcaaagcttggaaacactcatgttaccgccagttgtggagctcgaaacattgaattggtgaagagcttaggggcggatgaggttcttgattacaagacccctgaaggggctgctctaaagagtccatctggtcggaaatatgatgccgtgatccactgtgcaactggcattccttggtctacttttgagcctaacttgagtgaaaaggggaaggtcatagacattactcctggtcctagtgccttctctacttgtgttctgaagatgctaactttctccaaaaagaagttggtgccacttatgttgtatcccaagactaagaacctggattatcttgtgaagctggtgaaggaaggaaagctcaagacggtgatcgactcgaggcatcctctgagcaaggctgaagatgcttgggctaagagtattgatggccatacaactgggaagatcattgtggagccttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N_2

Protein Analysis

330

Amino Acids

35.12

Weight (kDa)

9.41

Isoelectric Point (pI)

28.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13010
fragaria_vesca	FvH4_2g18240 FvH4_2g18280 FvH4_2g18310 FvH4_2g18320 FvH4_2g18330 FvH4_2g18340 FvH4_2g18350
malus_domestica	MD05G1166800.v1.1 MD05G1167200.v1.1 MD05G1167300.v1.1 MD05G1167400.v1.1 MD05G1167600.v1.1 MD05G1168000.v1.1 MD05G1168200.v1.1 MD05G1168400.v1.1 MD05G1168600.v1.1 MD05G1168700.v1.1 MD05G1168800.v1.1 MD10G1156900.v1.1 MD10G1157000.v1.1 MD10G1157100.v1.1 MD10G1157200.v1.1
prunus_persica	Prupe.8G195100_v2.0.a1 Prupe.8G195100_v2.0.a1 Prupe.8G195300_v2.0.a1 Prupe.8G195600_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G196000_v2.0.a1 Prupe.8G196000_v2.0.a1
pyrus_communis	pycom05g15560 pycom05g15600 pycom05g15610 pycom05g15620 pycom05g15630 pycom10g13550 pycom10g13570
rosa_chinensis	RchiOBHm_Chr6g0283611 RchiOBHm_Chr6g0283631 RchiOBHm_Chr6g0283641 RchiOBHm_Chr6g0283661 RchiOBHm_Chr6g0283681 RchiOBHm_Chr6g0283691 RchiOBHm_Chr6g0283701 RchiOBHm_Chr6g0283711 RchiOBHm_Chr6g0283721
rosa_laevigata	RLG00000012804 RLG00000012807 RLG00000012811
rosa_multiflora	Rmu_co8263921.1_g000001 Rmu_sc0001521.1_g000009 Rmu_sc0002906.1_g000002 Rmu_sc0002906.1_g000011 Rmu_sc0002906.1_g000013 Rmu_sc0005719.1_g000016 Rmu_sc0005719.1_g000022 Rmu_sc0029460.1_g000001
rosa_roxburghii	Rroxscaffold_7G00185240 Rroxscaffold_7G00185250 Rroxscaffold_7G00185270 Rroxscaffold_7G00185280 Rroxscaffold_7G00185290 Rroxscaffold_7G00185330 Rroxscaffold_7G00185350
rosa_rugosa	Rorug06G0156100 Rorug06G0156300 Rorug06G0156400 Rorug06G0156500 Rorug06G0156600 Rorug06G0156700 Rorug06G0156800 Rorug06G0156900 Rorug06G0157000
rosa_samantha	Rh6AG267900 Rh6AG268100 Rh6AG268200 Rh6AG268400 Rh6AG268600 Rh6AG268700 Rh6AG268900 Rh6AG269100 Rh6BG270700 Rh6BG270900 Rh6BG271000 Rh6BG271200 Rh6BG271400 Rh6BG271500 Rh6CG270200 Rh6CG270400 Rh6CG270500 Rh6CG270800 Rh6CG270900 Rh6CG271000 Rh6CG271100 Rh6CG271300 Rh6DG263900 Rh6DG264100 Rh6DG264200 Rh6DG264400 Rh6DG264600 Rh6DG264800 Rh6DG265200
rosa_wichuraiana	Rw6G023210 Rw6G023220 Rw6G023230 Rw6G023240 Rw6G023250 Rw6G023260 Rw6G023270 Rw6G023280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	284
AccB1I	GGYRCC	1 cut(s)	820
AccI	GTMKAC	1 cut(s)	707
AciI	CCGC	6 cut(s)	172, 243, 386, 491, 555, 602
AclWI	GGATC	2 cut(s)	449, 673
AcoI	YGGCCR	2 cut(s)	460, 958
AcsI	RAATTY	2 cut(s)	153, 190
AcuI	CTGAAG	5 cut(s)	384, 399, 651, 809, 951
AfaI	GTAC	1 cut(s)	32
AfiI	CCNNNNNNNGG	4 cut(s)	302, 401, 633, 634
AgsI	TTSAA	3 cut(s)	190, 262, 581
AjnI	CCWGG	3 cut(s)	417, 757, 852
AjuI	GAANNNNNNNTTGG	2 cut(s)	464, 496
Alw21I	GWGCWC	1 cut(s)	571
Alw26I	GTCTC	3 cut(s)	264, 334, 410
AlwI	GGATC	2 cut(s)	449, 673
Ama87I	CYCGRG	1 cut(s)	907
AoxI	GGCC	6 cut(s)	163, 173, 356, 460, 492, 958
ApeKI	GCWGC	5 cut(s)	125, 169, 374, 434, 638
ApoI	RAATTY	2 cut(s)	153, 190
AspLEI	GCGC	1 cut(s)	374
AspS9I	GGNCC	1 cut(s)	761
AsuHPI	GGTGA	4 cut(s)	407, 598, 886, 910
AvaI	CYCGRG	1 cut(s)	907
AvaII	GGWCC	1 cut(s)	761
BaeI	ACNNNNGTAYC	2 cut(s)	201, 234
BalI	TGGCCA	2 cut(s)	462, 960
BanI	GGYRCC	1 cut(s)	820
BanII	GRGCYC	1 cut(s)	571
Bbv12I	GWGCWC	1 cut(s)	571
BbvI	GCAGC	5 cut(s)	137, 156, 386, 421, 625
BccI	CCATC	4 cut(s)	340, 446, 661, 950
BceAI	ACGGC	2 cut(s)	52, 659
BciT130I	CCWGG	3 cut(s)	419, 759, 854
BciVI	GTATCC	1 cut(s)	846
BcoDI	GTCTC	3 cut(s)	264, 334, 410
BfaI	CTAG	4 cut(s)	129, 354, 527, 765
BfmI	CTRYAG	1 cut(s)	435
BfuI	GTATCC	1 cut(s)	846
BisI	GCNGC	7 cut(s)	126, 170, 173, 375, 435, 492, 639
BlsI	GCNGC	7 cut(s)	127, 171, 174, 376, 436, 493, 640
Bme1390I	CCNGG	3 cut(s)	419, 759, 854
Bme18I	GGWCC	1 cut(s)	761
BmeT110I	CYCGRG	1 cut(s)	907
BmgT120I	GGNCC	1 cut(s)	761
BmiI	GGNNCC	3 cut(s)	78, 822, 987
BmrFI	CCNGG	3 cut(s)	419, 759, 854
BmrI	ACTGGG	1 cut(s)	978
BmsI	GCATC	4 cut(s)	661, 783, 922, 925
BmuI	ACTGGG	1 cut(s)	978
BplI	GAGNNNNNCTC	2 cut(s)	901, 933
BpmI	CTGGAG	1 cut(s)	243
Bpu10I	CCTNAGC	1 cut(s)	595
BpuEI	CTTGAG	2 cut(s)	745, 875
BsaI	GGTCTC	1 cut(s)	410
BsaJI	CCNNGG	1 cut(s)	701
BsaXI	ACNNNNNCTCC	4 cut(s)	216, 246, 261, 291
Bsc4I	CCNNNNNNNGG	4 cut(s)	302, 401, 633, 634
Bse1I	ACTGG	5 cut(s)	140, 463, 558, 697, 973
BseBI	CCWGG	3 cut(s)	419, 759, 854
BseDI	CCNNGG	1 cut(s)	701
BseGI	GGATG	2 cut(s)	610, 913
BseLI	CCNNNNNNNGG	4 cut(s)	302, 401, 633, 634
BseMII	CTCAG	2 cut(s)	309, 911
BseNI	ACTGG	5 cut(s)	140, 463, 558, 697, 973
BseRI	GAGGAG	1 cut(s)	261
BseXI	GCAGC	5 cut(s)	137, 156, 386, 421, 625
BshFI	GGCC	6 cut(s)	165, 175, 358, 462, 494, 960
BshNI	GGYRCC	1 cut(s)	820
BsiHKAI	GWGCWC	1 cut(s)	571
BsiHKCI	CYCGRG	1 cut(s)	907
BslI	CCNNNNNNNGG	4 cut(s)	302, 401, 633, 634
BsmAI	GTCTC	3 cut(s)	264, 334, 410
BsmI	GAATGC	1 cut(s)	696
BsnI	GGCC	6 cut(s)	165, 175, 358, 462, 494, 960
Bso31I	GGTCTC	1 cut(s)	410
BsoBI	CYCGRG	1 cut(s)	907
Bsp1286I	GDGCHC	1 cut(s)	571
Bsp143I	GATC	4 cut(s)	441, 678, 900, 975
BspACI	CCGC	6 cut(s)	172, 243, 386, 491, 555, 602
BspANI	GGCC	6 cut(s)	165, 175, 358, 462, 494, 960
BspCNI	CTCAG	2 cut(s)	310, 912
BspLI	GGNNCC	3 cut(s)	78, 822, 987
BspMAI	CTGCAG	1 cut(s)	439
BspPI	GGATC	2 cut(s)	449, 673
BspQI	GCTCTTC	1 cut(s)	584
BspT107I	GGYRCC	1 cut(s)	820
BspTNI	GGTCTC	1 cut(s)	410
BsrI	ACTGG	5 cut(s)	140, 463, 558, 697, 973
BssECI	CCNNGG	1 cut(s)	701
BssMI	GATC	4 cut(s)	441, 678, 900, 975
BssT1I	CCWWGG	1 cut(s)	701
Bst2UI	CCWGG	3 cut(s)	419, 759, 854
Bst4CI	ACNGT	2 cut(s)	686, 898
Bst6I	CTCTTC	1 cut(s)	584
BstC8I	GCNNGC	3 cut(s)	21, 167, 388
BstDEI	CTNAG	5 cut(s)	318, 595, 846, 920, 945
BstF5I	GGATG	2 cut(s)	610, 913
BstHHI	GCGC	1 cut(s)	374
BstKTI	GATC	4 cut(s)	444, 681, 903, 978
BstMAI	GTCTC	3 cut(s)	264, 334, 410
BstMBI	GATC	4 cut(s)	441, 678, 900, 975
BstMWI	GCNNNNNNNGC	4 cut(s)	323, 383, 419, 935
BstNI	CCWGG	3 cut(s)	419, 759, 854
BstNSI	RCATGY	2 cut(s)	23, 71
BstSCI	CCNGG	3 cut(s)	417, 757, 852
BstSFI	CTRYAG	1 cut(s)	435
BstV1I	GCAGC	5 cut(s)	137, 156, 386, 421, 625
BstXI	CCANNNNNNTGG	2 cut(s)	147, 968
BsuI	GTATCC	1 cut(s)	846
BsuRI	GGCC	6 cut(s)	165, 175, 358, 462, 494, 960
BtsCI	GGATG	2 cut(s)	610, 913
BtsI	GCAGTG	1 cut(s)	486
BtsIMutI	CAGTG	3 cut(s)	456, 486, 682
Cac8I	GCNNGC	3 cut(s)	21, 167, 388
CfoI	GCGC	1 cut(s)	374
Cfr13I	GGNCC	1 cut(s)	761
Csp6I	GTAC	1 cut(s)	31
CspCI	CAANNNNNGTGG	2 cut(s)	813, 848
CviAII	CATG	3 cut(s)	20, 68, 548
CviQI	GTAC	1 cut(s)	31
DdeI	CTNAG	5 cut(s)	318, 595, 846, 920, 945
DpnI	GATC	4 cut(s)	443, 680, 902, 977
DpnII	GATC	4 cut(s)	441, 678, 900, 975
DraI	TTTAAA	1 cut(s)	63
EaeI	YGGCCR	2 cut(s)	460, 958
Eam1104I	CTCTTC	1 cut(s)	584
EarI	CTCTTC	1 cut(s)	584
EciI	GGCGGA	2 cut(s)	258, 617
Ecl136II	GAGCTC	1 cut(s)	569
Eco130I	CCWWGG	1 cut(s)	701
Eco24I	GRGCYC	1 cut(s)	571
Eco31I	GGTCTC	1 cut(s)	410
Eco47I	GGWCC	1 cut(s)	761
Eco53kI	GAGCTC	1 cut(s)	569
Eco57I	CTGAAG	5 cut(s)	384, 399, 651, 809, 951
Eco88I	CYCGRG	1 cut(s)	907
EcoICRI	GAGCTC	1 cut(s)	569
EcoRII	CCWGG	3 cut(s)	417, 757, 852
EcoT14I	CCWWGG	1 cut(s)	701
EcoT22I	ATGCAT	1 cut(s)	21
EcoT38I	GRGCYC	1 cut(s)	571
ErhI	CCWWGG	1 cut(s)	701
FaeI	CATG	3 cut(s)	23, 71, 551
FatI	CATG	3 cut(s)	19, 67, 547
FauI	CCCGC	1 cut(s)	379
FblI	GTMKAC	1 cut(s)	707
Fnu4HI	GCNGC	7 cut(s)	126, 170, 173, 375, 435, 492, 639
FokI	GGATG	2 cut(s)	617, 900
FriOI	GRGCYC	1 cut(s)	571
Fsp4HI	GCNGC	7 cut(s)	126, 170, 173, 375, 435, 492, 639
FspBI	CTAG	4 cut(s)	129, 354, 527, 765
GlaI	GCGC	1 cut(s)	373
GluI	GCNGC	7 cut(s)	126, 170, 173, 375, 435, 492, 639
GsuI	CTGGAG	1 cut(s)	243
HaeIII	GGCC	6 cut(s)	165, 175, 358, 462, 494, 960
HhaI	GCGC	1 cut(s)	374
Hin1II	CATG	3 cut(s)	23, 71, 551
Hin6I	GCGC	1 cut(s)	372
HinP1I	GCGC	1 cut(s)	372
HindIII	AAGCTT	2 cut(s)	11, 533
HinfI	GANTC	4 cut(s)	249, 504, 649, 905
HphI	GGTGA	4 cut(s)	407, 598, 886, 910
Hpy166II	GTNNAC	1 cut(s)	708
Hpy188I	TCNGA	4 cut(s)	159, 663, 789, 921
Hpy188III	TCNNGA	3 cut(s)	222, 614, 892
Hpy8I	GTNNAC	1 cut(s)	708
Hpy99I	CGWCG	1 cut(s)	38
HpyAV	CCTTC	6 cut(s)	374, 626, 733, 781, 871, 875
HpyCH4III	ACNGT	2 cut(s)	686, 898
HpyCH4IV	ACGT	1 cut(s)	216
HpyCH4V	TGCA	4 cut(s)	19, 326, 437, 689
HpyF10VI	GCNNNNNNNGC	4 cut(s)	323, 383, 419, 935
HpyF3I	CTNAG	5 cut(s)	318, 595, 846, 920, 945
HpySE526I	ACGT	1 cut(s)	216
Hsp92II	CATG	3 cut(s)	23, 71, 551
HspAI	GCGC	1 cut(s)	372
Kzo9I	GATC	4 cut(s)	441, 678, 900, 975
LguI	GCTCTTC	1 cut(s)	584
LmnI	GCTCC	2 cut(s)	566, 985
Lsp1109I	GCAGC	5 cut(s)	137, 156, 386, 421, 625
LweI	GCATC	4 cut(s)	661, 783, 922, 925
MaeI	CTAG	4 cut(s)	129, 354, 527, 765
MaeII	ACGT	1 cut(s)	216
MaeIII	GTNAC	5 cut(s)	349, 424, 484, 509, 550
MalI	GATC	4 cut(s)	443, 680, 902, 977
MboI	GATC	4 cut(s)	441, 678, 900, 975
MboII	GAAGA	6 cut(s)	19, 484, 601, 802, 944, 985
MhlI	GDGCHC	1 cut(s)	571
MlsI	TGGCCA	2 cut(s)	462, 960
MluCI	AATT	3 cut(s)	153, 190, 581
MluNI	TGGCCA	2 cut(s)	462, 960
MlyI	GAGTC	4 cut(s)	258, 513, 658, 899
MmeI	TCCRAC	2 cut(s)	547, 641
Mox20I	TGGCCA	2 cut(s)	462, 960
Mph1103I	ATGCAT	1 cut(s)	21
MscI	TGGCCA	2 cut(s)	462, 960
MseI	TTAA	2 cut(s)	62, 991
Msp20I	TGGCCA	2 cut(s)	462, 960
MspA1I	CMGCKG	2 cut(s)	169, 377
MspR9I	CCNGG	3 cut(s)	419, 759, 854
Mva1269I	GAATGC	1 cut(s)	696
MvaI	CCWGG	3 cut(s)	419, 759, 854
MwoI	GCNNNNNNNGC	4 cut(s)	323, 383, 419, 935
NdeII	GATC	4 cut(s)	441, 678, 900, 975
NlaIII	CATG	3 cut(s)	23, 71, 551
NlaIV	GGNNCC	3 cut(s)	78, 822, 987
NmuCI	GTSAC	3 cut(s)	424, 484, 509
NsiI	ATGCAT	1 cut(s)	21
NspI	RCATGY	2 cut(s)	23, 71
PaeI	GCATGC	1 cut(s)	23
PaeR7I	CTCGAG	1 cut(s)	907
PciSI	GCTCTTC	1 cut(s)	584
PctI	GAATGC	1 cut(s)	696
PkrI	GCNGC	7 cut(s)	127, 171, 174, 376, 436, 493, 640
PleI	GAGTC	4 cut(s)	257, 512, 657, 899
PpsI	GAGTC	4 cut(s)	257, 512, 657, 899
PsiI	TTATAA	1 cut(s)	284
Psp124BI	GAGCTC	1 cut(s)	571
Psp6I	CCWGG	3 cut(s)	417, 757, 852
PspGI	CCWGG	3 cut(s)	417, 757, 852
PspN4I	GGNNCC	3 cut(s)	78, 822, 987
PspPI	GGNCC	1 cut(s)	761
PspXI	VCTCGAGB	1 cut(s)	907
PstI	CTGCAG	1 cut(s)	439
PvuII	CAGCTG	2 cut(s)	169, 377
RsaI	GTAC	1 cut(s)	32
RsaNI	GTAC	1 cut(s)	31
SacI	GAGCTC	1 cut(s)	571
SapI	GCTCTTC	1 cut(s)	584
SaqAI	TTAA	2 cut(s)	62, 991
SatI	GCNGC	7 cut(s)	126, 170, 173, 375, 435, 492, 639
Sau3AI	GATC	4 cut(s)	441, 678, 900, 975
Sau96I	GGNCC	1 cut(s)	761
SchI	GAGTC	4 cut(s)	258, 513, 658, 899
ScrFI	CCNGG	3 cut(s)	419, 759, 854
SduI	GDGCHC	1 cut(s)	571
SfaNI	GCATC	4 cut(s)	661, 783, 922, 925
SfcI	CTRYAG	1 cut(s)	435
Sfr274I	CTCGAG	1 cut(s)	907
SinI	GGWCC	1 cut(s)	761
SlaI	CTCGAG	1 cut(s)	907
SmlI	CTYRAG	3 cut(s)	724, 890, 907
SmoI	CTYRAG	3 cut(s)	724, 890, 907
SphI	GCATGC	1 cut(s)	23
Sse9I	AATT	3 cut(s)	153, 190, 581
SsiI	CCGC	6 cut(s)	172, 243, 386, 491, 555, 602
SspMI	CTAG	4 cut(s)	129, 354, 527, 765
SstI	GAGCTC	1 cut(s)	571
StyD4I	CCNGG	3 cut(s)	417, 757, 852
StyI	CCWWGG	1 cut(s)	701
TaaI	ACNGT	2 cut(s)	686, 898
TaiI	ACGT	1 cut(s)	219
TaqI	TCGA	6 cut(s)	5, 72, 450, 571, 903, 908
TaqII	GACCGA	1 cut(s)	497
TasI	AATT	3 cut(s)	153, 190, 581
TauI	GCSGC	2 cut(s)	175, 494
Tru1I	TTAA	2 cut(s)	62, 991
Tru9I	TTAA	2 cut(s)	62, 991
TscAI	CASTG	3 cut(s)	463, 493, 689
TseFI	GTSAC	3 cut(s)	424, 484, 509
TseI	GCWGC	5 cut(s)	125, 169, 374, 434, 638
Tsp45I	GTSAC	3 cut(s)	424, 484, 509
TspGWI	ACGGA	2 cut(s)	227, 318
TspRI	CASTG	3 cut(s)	463, 493, 689
VpaK11BI	GGWCC	1 cut(s)	761
XapI	RAATTY	2 cut(s)	153, 190
XceI	RCATGY	2 cut(s)	23, 71
XcmI	CCANNNNNNNNNTGG	2 cut(s)	689, 814
XhoI	CTCGAG	1 cut(s)	907
XmiI	GTMKAC	1 cut(s)	707
XspI	CTAG	4 cut(s)	129, 354, 527, 765
Zsp2I	ATGCAT	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.