Rh6DG264800

Zinc-binding dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000313
Physical Location & Seq
Forward (+)
45672642 .. 45674699
2058 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG264800.1

Sequence Viewer

Length: 888 bp
ATGGCGCATGTTGAGATTCCAATCCCAACTCCGAAGAAAGATGAGGTTTTGCTGAAATTAGAAGCAGCTAGTCTGAATCCCGTTGATTGGACAATTCAGACAGGCTTGATGCGGCCTTTATTTTTCCCGCGCCACTTTCCTCATACTCCTGGTAAAGTTGCTGTTCTGAATTCTGATCATATGTGTACGTGCATGAATGGAGGTGGATTTGCTGAATTTGCAACTGCTAGTGAGAGTTTGACTGTTACTAGGCCGCCGGAAGTTTCAGCAGCTGAAGCTGCAGGGTTACCTATTGCAGGTATCACAGCTCACAAGTGTCTCACTCAAGCTGCAGGAGTCAAGCTGGACGGCACCGGCCCGCAGAAAAACATATTGGTTACTGCTGCCTCTGGAGGTGTAGGGCACTATGCAGTCCAACTAGCAAAGCTCGGGAACCATCATGTCACAGCCACTTGTGGAGCGCGTAACATTGATTTGGTCAAGAGCTTAGGGGCTGACGAGGTTCCTGACTACAAGACCCCTGAAGGGGCAGCTCTGAATAGCCCTTCTGGTCGGAAATATGATGCTGTGATCCACTGTACAACGGGCATTCCTTGGTCCACTTTTAATCCGAATTTGAGTCCAAATGGGAAGGTCATAGACATTACTCCCGGTCCAAGGGCTATGCTTACTTTCACTCTACAGAAACTCACCTGCTCCAAGAAGCAGCTGGTGCCGCTGCTGGTGATTCGCAAGGCTGAGAACCTGGAATATCTTGTTCAGTTGGTGAAGGAAGGAAAGCTCAAGACGGTGATCGACTCAACGCATCCTCTGAGCAAGGCTGAAGATGCTTGGGGTAAGAGCATCGACGGCCATGCTACTGGGAAGATCATTGTGGAGCCTAAATAG

Protein Analysis

295

Amino Acids

31.32

Weight (kDa)

8.66

Isoelectric Point (pI)

27.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_zinc_N PF00107 132 - 256 2.9e-10 Zinc-binding dehydrogenase
ADH_zinc_N_2 PF13602 163 - 292 9.8e-21 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000313)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G13010
fragaria_vesca FvH4_2g18240 FvH4_2g18280 FvH4_2g18310 FvH4_2g18320 FvH4_2g18330 FvH4_2g18340 FvH4_2g18350
malus_domestica MD05G1166800.v1.1 MD05G1167200.v1.1 MD05G1167300.v1.1 MD05G1167400.v1.1 MD05G1167600.v1.1 MD05G1168000.v1.1 MD05G1168200.v1.1 MD05G1168400.v1.1 MD05G1168600.v1.1 MD05G1168700.v1.1 MD05G1168800.v1.1 MD10G1156900.v1.1 MD10G1157000.v1.1 MD10G1157100.v1.1 MD10G1157200.v1.1
prunus_persica Prupe.8G195100_v2.0.a1 Prupe.8G195100_v2.0.a1 Prupe.8G195300_v2.0.a1 Prupe.8G195600_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G196000_v2.0.a1 Prupe.8G196000_v2.0.a1
pyrus_communis pycom05g15560 pycom05g15600 pycom05g15610 pycom05g15620 pycom05g15630 pycom10g13550 pycom10g13570
rosa_chinensis RchiOBHm_Chr6g0283611 RchiOBHm_Chr6g0283631 RchiOBHm_Chr6g0283641 RchiOBHm_Chr6g0283661 RchiOBHm_Chr6g0283681 RchiOBHm_Chr6g0283691 RchiOBHm_Chr6g0283701 RchiOBHm_Chr6g0283711 RchiOBHm_Chr6g0283721
rosa_laevigata RLG00000012804 RLG00000012807 RLG00000012811
rosa_multiflora Rmu_co8263921.1_g000001 Rmu_sc0001521.1_g000009 Rmu_sc0002906.1_g000002 Rmu_sc0002906.1_g000011 Rmu_sc0002906.1_g000013 Rmu_sc0005719.1_g000016 Rmu_sc0005719.1_g000022 Rmu_sc0029460.1_g000001
rosa_roxburghii Rroxscaffold_7G00185240 Rroxscaffold_7G00185250 Rroxscaffold_7G00185270 Rroxscaffold_7G00185280 Rroxscaffold_7G00185290 Rroxscaffold_7G00185330 Rroxscaffold_7G00185350
rosa_rugosa Rorug06G0156100 Rorug06G0156300 Rorug06G0156400 Rorug06G0156500 Rorug06G0156600 Rorug06G0156700 Rorug06G0156800 Rorug06G0156900 Rorug06G0157000
rosa_samantha Rh6AG267900 Rh6AG268100 Rh6AG268200 Rh6AG268400 Rh6AG268600 Rh6AG268700 Rh6AG268900 Rh6AG269100 Rh6BG270700 Rh6BG270900 Rh6BG271000 Rh6BG271200 Rh6BG271400 Rh6BG271500 Rh6CG270200 Rh6CG270400 Rh6CG270500 Rh6CG270800 Rh6CG270900 Rh6CG271000 Rh6CG271100 Rh6CG271300 Rh6DG263900 Rh6DG264100 Rh6DG264200 Rh6DG264400 Rh6DG264600 Rh6DG264800 Rh6DG265200
rosa_wichuraiana Rw6G023210 Rw6G023220 Rw6G023230 Rw6G023240 Rw6G023250 Rw6G023260 Rw6G023270 Rw6G023280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 701
Acc36I ACCTGC 2 cut(s) 287, 701
AccB1I GGYRCC 2 cut(s) 350, 712
AccII CGCG 2 cut(s) 130, 463
AciI CCGC 5 cut(s) 112, 128, 254, 359, 716
AclWI GGATC 1 cut(s) 565
AcoI YGGCCR 1 cut(s) 850
AcsI RAATTY 3 cut(s) 169, 215, 613
AcuI CTGAAG 3 cut(s) 294, 543, 843
AfaI GTAC 2 cut(s) 187, 580
AfiI CCNNNNNNNGG 5 cut(s) 87, 296, 525, 526, 657
AjnI CCWGG 2 cut(s) 148, 744
AjuI GAANNNNNNNTTGG 2 cut(s) 356, 388
Alw26I GTCTC 1 cut(s) 323
AlwI GGATC 1 cut(s) 565
AlwNI CAGNNNCTG 1 cut(s) 272
Ama87I CYCGRG 1 cut(s) 428
AoxI GGCC 4 cut(s) 113, 251, 355, 850
ApeKI GCWGC 8 cut(s) 65, 269, 278, 329, 383, 530, 706, 718
ApoI RAATTY 3 cut(s) 169, 215, 613
AspLEI GCGC 3 cut(s) 7, 132, 463
AspS9I GGNCC 3 cut(s) 356, 597, 653
AsuC2I CCSGG 1 cut(s) 651
AsuHPI GGTGA 4 cut(s) 682, 736, 778, 802
AvaI CYCGRG 1 cut(s) 428
AvaII GGWCC 2 cut(s) 597, 653
BaeGI GKGCMC 1 cut(s) 405
BanI GGYRCC 2 cut(s) 350, 712
BbvI GCAGC 8 cut(s) 77, 265, 281, 316, 370, 542, 705, 718
BccI CCATC 1 cut(s) 444
BceAI ACGGC 2 cut(s) 364, 865
BcgI CGANNNNNNTGC 2 cut(s) 836, 870
BciT130I CCWGG 2 cut(s) 150, 746
BclI TGATCA 1 cut(s) 175
BcnI CCSGG 1 cut(s) 651
BcoDI GTCTC 1 cut(s) 323
BfaI CTAG 4 cut(s) 69, 228, 249, 419
BfmI CTRYAG 3 cut(s) 279, 330, 680
BfuAI ACCTGC 2 cut(s) 287, 701
Bme1390I CCNGG 3 cut(s) 150, 651, 746
Bme18I GGWCC 2 cut(s) 597, 653
BmeT110I CYCGRG 1 cut(s) 428
BmgT120I GGNCC 3 cut(s) 356, 597, 653
BmiI GGNNCC 5 cut(s) 352, 434, 504, 714, 879
BmrFI CCNGG 3 cut(s) 150, 651, 746
BmrI ACTGGG 1 cut(s) 870
BmsI GCATC 5 cut(s) 99, 553, 814, 817, 852
BmuI ACTGGG 1 cut(s) 870
BpmI CTGGAG 1 cut(s) 411
Bpu10I CCTNAGC 1 cut(s) 487
BpuEI CTTGAG 2 cut(s) 309, 767
BpuMI CCSGG 1 cut(s) 651
BsaAI YACGTR 1 cut(s) 189
BsaBI GATNNNNATC 1 cut(s) 20
BsaJI CCNNGG 2 cut(s) 593, 656
Bsc4I CCNNNNNNNGG 5 cut(s) 87, 296, 525, 526, 657
Bse118I RCCGGY 1 cut(s) 353
Bse1I ACTGG 1 cut(s) 865
Bse8I GATNNNNATC 1 cut(s) 20
BseBI CCWGG 2 cut(s) 150, 746
BseDI CCNNGG 2 cut(s) 593, 656
BseGI GGATG 1 cut(s) 805
BseJI GATNNNNATC 1 cut(s) 20
BseLI CCNNNNNNNGG 5 cut(s) 87, 296, 525, 526, 657
BseMII CTCAG 2 cut(s) 729, 803
BseNI ACTGG 1 cut(s) 865
BseSI GKGCMC 1 cut(s) 405
BseXI GCAGC 8 cut(s) 77, 265, 281, 316, 370, 542, 705, 718
Bsh1236I CGCG 2 cut(s) 130, 463
BshFI GGCC 4 cut(s) 115, 253, 357, 852
BshNI GGYRCC 2 cut(s) 350, 712
BsiHKCI CYCGRG 1 cut(s) 428
BsiSI CCGG 3 cut(s) 257, 354, 651
BslI CCNNNNNNNGG 5 cut(s) 87, 296, 525, 526, 657
BsmAI GTCTC 1 cut(s) 323
BsmI GAATGC 1 cut(s) 588
BsnI GGCC 4 cut(s) 115, 253, 357, 852
BsoBI CYCGRG 1 cut(s) 428
Bsp1286I GDGCHC 1 cut(s) 405
Bsp1407I TGTACA 1 cut(s) 578
Bsp143I GATC 4 cut(s) 175, 570, 792, 867
BspACI CCGC 5 cut(s) 112, 128, 254, 359, 716
BspANI GGCC 4 cut(s) 115, 253, 357, 852
BspCNI CTCAG 2 cut(s) 730, 804
BspFNI CGCG 2 cut(s) 130, 463
BspLI GGNNCC 5 cut(s) 352, 434, 504, 714, 879
BspMAI CTGCAG 2 cut(s) 283, 334
BspMI ACCTGC 2 cut(s) 287, 701
BspPI GGATC 1 cut(s) 565
BspT107I GGYRCC 2 cut(s) 350, 712
BsrFI RCCGGY 1 cut(s) 353
BsrGI TGTACA 1 cut(s) 578
BsrI ACTGG 1 cut(s) 865
BssAI RCCGGY 1 cut(s) 353
BssECI CCNNGG 2 cut(s) 593, 656
BssMI GATC 4 cut(s) 175, 570, 792, 867
BssT1I CCWWGG 2 cut(s) 593, 656
Bst2UI CCWGG 2 cut(s) 150, 746
Bst4CI ACNGT 3 cut(s) 244, 578, 790
BstAPI GCANNNNNTGC 1 cut(s) 712
BstAUI TGTACA 1 cut(s) 578
BstBAI YACGTR 1 cut(s) 189
BstC8I GCNNGC 1 cut(s) 359
BstDEI CTNAG 3 cut(s) 487, 738, 812
BstEII GGTNACC 1 cut(s) 285
BstENI CCTNNNNNAGG 1 cut(s) 294
BstF5I GGATG 1 cut(s) 805
BstFNI CGCG 2 cut(s) 130, 463
BstHHI GCGC 3 cut(s) 7, 132, 463
BstKTI GATC 4 cut(s) 178, 573, 795, 870
BstMAI GTCTC 1 cut(s) 323
BstMBI GATC 4 cut(s) 175, 570, 792, 867
BstMWI GCNNNNNNNGC 7 cut(s) 218, 275, 278, 712, 715, 827, 849
BstNI CCWGG 2 cut(s) 150, 746
BstNSI RCATGY 1 cut(s) 11
BstPI GGTNACC 1 cut(s) 285
BstSCI CCNGG 3 cut(s) 148, 649, 744
BstSFI CTRYAG 3 cut(s) 279, 330, 680
BstSLI GKGCMC 1 cut(s) 405
BstUI CGCG 2 cut(s) 130, 463
BstV1I GCAGC 8 cut(s) 77, 265, 281, 316, 370, 542, 705, 718
BstXI CCANNNNNNTGG 1 cut(s) 860
BsuRI GGCC 4 cut(s) 115, 253, 357, 852
BtsCI GGATG 1 cut(s) 805
BtsIMutI CAGTG 1 cut(s) 574
BveI ACCTGC 2 cut(s) 287, 701
Cac8I GCNNGC 1 cut(s) 359
CaiI CAGNNNCTG 1 cut(s) 272
CfoI GCGC 3 cut(s) 7, 132, 463
Cfr10I RCCGGY 1 cut(s) 353
Cfr13I GGNCC 3 cut(s) 356, 597, 653
Csp6I GTAC 2 cut(s) 186, 579
CviAII CATG 4 cut(s) 8, 193, 440, 854
CviQI GTAC 2 cut(s) 186, 579
DdeI CTNAG 3 cut(s) 487, 738, 812
DpnI GATC 4 cut(s) 177, 572, 794, 869
DpnII GATC 4 cut(s) 175, 570, 792, 867
EaeI YGGCCR 1 cut(s) 850
Eco130I CCWWGG 2 cut(s) 593, 656
Eco47I GGWCC 2 cut(s) 597, 653
Eco57I CTGAAG 3 cut(s) 294, 543, 843
Eco88I CYCGRG 1 cut(s) 428
Eco91I GGTNACC 1 cut(s) 285
EcoNI CCTNNNNNAGG 1 cut(s) 294
EcoO65I GGTNACC 1 cut(s) 285
EcoRI GAATTC 1 cut(s) 169
EcoRII CCWGG 2 cut(s) 148, 744
EcoT14I CCWWGG 2 cut(s) 593, 656
ErhI CCWWGG 2 cut(s) 593, 656
FaeI CATG 4 cut(s) 11, 196, 443, 857
FatI CATG 4 cut(s) 7, 192, 439, 853
FauI CCCGC 2 cut(s) 135, 366
FauNDI CATATG 1 cut(s) 180
FbaI TGATCA 1 cut(s) 175
FokI GGATG 1 cut(s) 792
FspBI CTAG 4 cut(s) 69, 228, 249, 419
GlaI GCGC 3 cut(s) 6, 131, 462
GsuI CTGGAG 1 cut(s) 411
HaeIII GGCC 4 cut(s) 115, 253, 357, 852
HapII CCGG 3 cut(s) 257, 354, 651
HhaI GCGC 3 cut(s) 7, 132, 463
Hin1II CATG 4 cut(s) 11, 196, 443, 857
Hin6I GCGC 3 cut(s) 5, 130, 461
HinP1I GCGC 3 cut(s) 5, 130, 461
HinfI GANTC 6 cut(s) 16, 76, 336, 619, 727, 797
HpaII CCGG 3 cut(s) 257, 354, 651
HphI GGTGA 4 cut(s) 682, 736, 778, 802
Hpy166II GTNNAC 2 cut(s) 186, 600
Hpy188I TCNGA 9 cut(s) 33, 75, 99, 168, 175, 537, 555, 612, 813
Hpy188III TCNNGA 5 cut(s) 390, 430, 481, 506, 784
Hpy8I GTNNAC 2 cut(s) 186, 600
Hpy99I CGWCG 1 cut(s) 851
HpyAV CCTTC 5 cut(s) 518, 555, 625, 763, 767
HpyCH4III ACNGT 3 cut(s) 244, 578, 790
HpyCH4IV ACGT 1 cut(s) 188
HpyCH4V TGCA 6 cut(s) 192, 221, 281, 296, 332, 410
HpyF10VI GCNNNNNNNGC 7 cut(s) 218, 275, 278, 712, 715, 827, 849
HpyF3I CTNAG 3 cut(s) 487, 738, 812
HpySE526I ACGT 1 cut(s) 188
Hsp92II CATG 4 cut(s) 11, 196, 443, 857
HspAI GCGC 3 cut(s) 5, 130, 461
Ksp22I TGATCA 1 cut(s) 175
Kzo9I GATC 4 cut(s) 175, 570, 792, 867
LmnI GCTCC 3 cut(s) 458, 701, 877
Lsp1109I GCAGC 8 cut(s) 77, 265, 281, 316, 370, 542, 705, 718
LweI GCATC 5 cut(s) 99, 553, 814, 817, 852
MaeI CTAG 4 cut(s) 69, 228, 249, 419
MaeII ACGT 1 cut(s) 188
MaeIII GTNAC 5 cut(s) 244, 285, 376, 442, 464
MalI GATC 4 cut(s) 177, 572, 794, 869
MboI GATC 4 cut(s) 175, 570, 792, 867
MboII GAAGA 3 cut(s) 46, 836, 877
MhlI GDGCHC 1 cut(s) 405
MluCI AATT 5 cut(s) 56, 93, 169, 215, 613
MlyI GAGTC 3 cut(s) 345, 628, 791
MmeI TCCRAC 2 cut(s) 439, 533
MnlI CCTC 7 cut(s) 37, 150, 194, 386, 397, 493, 819
MseI TTAA 1 cut(s) 606
MspA1I CMGCKG 3 cut(s) 272, 709, 718
MspI CCGG 3 cut(s) 257, 354, 651
MspR9I CCNGG 3 cut(s) 150, 651, 746
Mva1269I GAATGC 1 cut(s) 588
MvaI CCWGG 2 cut(s) 150, 746
MvnI CGCG 2 cut(s) 130, 463
MwoI GCNNNNNNNGC 7 cut(s) 218, 275, 278, 712, 715, 827, 849
NciI CCSGG 1 cut(s) 651
NdeI CATATG 1 cut(s) 180
NdeII GATC 4 cut(s) 175, 570, 792, 867
NlaIII CATG 4 cut(s) 11, 196, 443, 857
NlaIV GGNNCC 5 cut(s) 352, 434, 504, 714, 879
NmuCI GTSAC 1 cut(s) 442
NspI RCATGY 1 cut(s) 11
PaqCI CACCTGC 1 cut(s) 701
PctI GAATGC 1 cut(s) 588
PfeI GAWTC 3 cut(s) 16, 76, 727
PleI GAGTC 3 cut(s) 344, 627, 791
PpsI GAGTC 3 cut(s) 344, 627, 791
Ppu21I YACGTR 1 cut(s) 189
Psp6I CCWGG 2 cut(s) 148, 744
PspEI GGTNACC 1 cut(s) 285
PspGI CCWGG 2 cut(s) 148, 744
PspN4I GGNNCC 5 cut(s) 352, 434, 504, 714, 879
PspPI GGNCC 3 cut(s) 356, 597, 653
PstI CTGCAG 2 cut(s) 283, 334
PstNI CAGNNNCTG 1 cut(s) 272
PvuII CAGCTG 2 cut(s) 272, 709
RsaI GTAC 2 cut(s) 187, 580
RsaNI GTAC 2 cut(s) 186, 579
SaqAI TTAA 1 cut(s) 606
Sau3AI GATC 4 cut(s) 175, 570, 792, 867
Sau96I GGNCC 3 cut(s) 356, 597, 653
SchI GAGTC 3 cut(s) 345, 628, 791
ScrFI CCNGG 3 cut(s) 150, 651, 746
SduI GDGCHC 1 cut(s) 405
SfaNI GCATC 5 cut(s) 99, 553, 814, 817, 852
SfcI CTRYAG 3 cut(s) 279, 330, 680
SinI GGWCC 2 cut(s) 597, 653
SmlI CTYRAG 2 cut(s) 324, 782
SmoI CTYRAG 2 cut(s) 324, 782
Sse9I AATT 5 cut(s) 56, 93, 169, 215, 613
SsiI CCGC 5 cut(s) 112, 128, 254, 359, 716
SspMI CTAG 4 cut(s) 69, 228, 249, 419
StyD4I CCNGG 3 cut(s) 148, 649, 744
StyI CCWWGG 2 cut(s) 593, 656
TaaI ACNGT 3 cut(s) 244, 578, 790
TaiI ACGT 1 cut(s) 191
TaqI TCGA 2 cut(s) 795, 846
TasI AATT 5 cut(s) 56, 93, 169, 215, 613
TatI WGTACW 1 cut(s) 578
TauI GCSGC 3 cut(s) 115, 256, 718
TfiI GAWTC 3 cut(s) 16, 76, 727
Tru1I TTAA 1 cut(s) 606
Tru9I TTAA 1 cut(s) 606
TscAI CASTG 1 cut(s) 581
TseFI GTSAC 1 cut(s) 442
TseI GCWGC 8 cut(s) 65, 269, 278, 329, 383, 530, 706, 718
Tsp45I GTSAC 1 cut(s) 442
TspDTI ATGAA 1 cut(s) 209
TspRI CASTG 1 cut(s) 581
VpaK11BI GGWCC 2 cut(s) 597, 653
XagI CCTNNNNNAGG 1 cut(s) 294
XapI RAATTY 3 cut(s) 169, 215, 613
XceI RCATGY 1 cut(s) 11
XcmI CCANNNNNNNNNTGG 1 cut(s) 706
XspI CTAG 4 cut(s) 69, 228, 249, 419
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.