Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000313

Physical Location & Seq

Genomic Coordinates Forward (+)

46931359 .. 46933140

Gene Structure 1782 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ25439

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGCGGTTCAGTACAACAGTTATGGTGGATGACCGTCTGCATGTTGAGATTCCAATCCCAACTCCGAAGAAAGATGAGGTTTTGCTGAAATTAGAAGCAGCTAGTCTGAATCCCGTTGATTGGACAATTCAGACAGGCTTGATGCGGCCTTTATTTTTCCCGCGCCACTTTCCTCATACTCCTGTTAGCGATGTGGCCGGAGAGGTTGTCGAGGTTGGACAAGGAGTTCGAAAGTTCAAAGTGGGCGACAAAGTTGTGGCAATTCTCACCCTCTCTAATGGAGGTGGATTTGCTGAATTTGCAACTGCTAGTGAGAGTTTGACTGTTACTAGGCCGCCGGAAGTTTCAGCAGCTGAAGCTGCAGGGTTACCTATTGCAGGTATCACAGCTCACAAGTGTCTCACTCAAGCTGCAGGAGTCAAGCTGGACGGCACCGGCCCGCAGAAAAACATATTGGTTACTGCTGCCTCTGGAGGTGTAGGGCACTATGCAGTCCAACTAGCAAAGCTCGGGAACCATCATGTCACAGCCACTTGTGGAGCGCGTAACATTGATTTGGTCAAGAGCTTAGGGGCTGACGAGGTTCCTGACTACAAGACCCCTGAAGGGGCAGCTCTGAATAGCCCTTCTGGTCGGAAATATGATGCTGTGATCCACTGTACAACGGGCATTCCTTGGTCCACTTTTAATCCGAATTTGAGTCCAAATGGGAAGGTCATAGACATTACTCCCGGTCCAAGGGCTATGCTTACTTTCACTCTACAGAAACTCACCTGCTCCAAGAAGCAGCTGGTGCCGCTGCTGGTGATTCGCAAGGCTGAGAACCTGGAATATCTTGTTCAGTTGGTGAAGGAAGGAAAGCTCAAGACGGTGATCGACTCAACGCATCCTCTGAGCAAGGCTGAAGATGCTTGGGGTAAGAGCATCGACGGCCATGCTACTGGGAAGATCATTGTGGAGCCTAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N_2

Protein Analysis

322

Amino Acids

34.27

Weight (kDa)

8.76

Isoelectric Point (pI)

22.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	24 - 110	3.3e-15	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	159 - 283	3.5e-10	Zinc-binding dehydrogenase
ADH_zinc_N_2	PF13602	190 - 319	1.2e-20	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13010
fragaria_vesca	FvH4_2g18240 FvH4_2g18280 FvH4_2g18310 FvH4_2g18320 FvH4_2g18330 FvH4_2g18340 FvH4_2g18350
malus_domestica	MD05G1166800.v1.1 MD05G1167200.v1.1 MD05G1167300.v1.1 MD05G1167400.v1.1 MD05G1167600.v1.1 MD05G1168000.v1.1 MD05G1168200.v1.1 MD05G1168400.v1.1 MD05G1168600.v1.1 MD05G1168700.v1.1 MD05G1168800.v1.1 MD10G1156900.v1.1 MD10G1157000.v1.1 MD10G1157100.v1.1 MD10G1157200.v1.1
prunus_persica	Prupe.8G195100_v2.0.a1 Prupe.8G195100_v2.0.a1 Prupe.8G195300_v2.0.a1 Prupe.8G195600_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G196000_v2.0.a1 Prupe.8G196000_v2.0.a1
pyrus_communis	pycom05g15560 pycom05g15600 pycom05g15610 pycom05g15620 pycom05g15630 pycom10g13550 pycom10g13570
rosa_chinensis	RchiOBHm_Chr6g0283611 RchiOBHm_Chr6g0283631 RchiOBHm_Chr6g0283641 RchiOBHm_Chr6g0283661 RchiOBHm_Chr6g0283681 RchiOBHm_Chr6g0283691 RchiOBHm_Chr6g0283701 RchiOBHm_Chr6g0283711 RchiOBHm_Chr6g0283721
rosa_laevigata	RLG00000012804 RLG00000012807 RLG00000012811
rosa_multiflora	Rmu_co8263921.1_g000001 Rmu_sc0001521.1_g000009 Rmu_sc0002906.1_g000002 Rmu_sc0002906.1_g000011 Rmu_sc0002906.1_g000013 Rmu_sc0005719.1_g000016 Rmu_sc0005719.1_g000022 Rmu_sc0029460.1_g000001
rosa_roxburghii	Rroxscaffold_7G00185240 Rroxscaffold_7G00185250 Rroxscaffold_7G00185270 Rroxscaffold_7G00185280 Rroxscaffold_7G00185290 Rroxscaffold_7G00185330 Rroxscaffold_7G00185350
rosa_rugosa	Rorug06G0156100 Rorug06G0156300 Rorug06G0156400 Rorug06G0156500 Rorug06G0156600 Rorug06G0156700 Rorug06G0156800 Rorug06G0156900 Rorug06G0157000
rosa_samantha	Rh6AG267900 Rh6AG268100 Rh6AG268200 Rh6AG268400 Rh6AG268600 Rh6AG268700 Rh6AG268900 Rh6AG269100 Rh6BG270700 Rh6BG270900 Rh6BG271000 Rh6BG271200 Rh6BG271400 Rh6BG271500 Rh6CG270200 Rh6CG270400 Rh6CG270500 Rh6CG270800 Rh6CG270900 Rh6CG271000 Rh6CG271100 Rh6CG271300 Rh6DG263900 Rh6DG264100 Rh6DG264200 Rh6DG264400 Rh6DG264600 Rh6DG264800 Rh6DG265200
rosa_wichuraiana	Rw6G023210 Rw6G023220 Rw6G023230 Rw6G023240 Rw6G023250 Rw6G023260 Rw6G023270 Rw6G023280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	782
Acc36I	ACCTGC	2 cut(s)	368, 782
AccB1I	GGYRCC	2 cut(s)	431, 793
AccII	CGCG	2 cut(s)	163, 544
AciI	CCGC	6 cut(s)	4, 145, 161, 335, 440, 797
AclWI	GGATC	1 cut(s)	646
AcoI	YGGCCR	2 cut(s)	195, 931
AcsI	RAATTY	2 cut(s)	296, 694
AcuI	CTGAAG	3 cut(s)	375, 624, 924
AfaI	GTAC	2 cut(s)	13, 661
AfiI	CCNNNNNNNGG	5 cut(s)	120, 377, 606, 607, 738
AgsI	TTSAA	1 cut(s)	238
AjnI	CCWGG	1 cut(s)	825
AjuI	GAANNNNNNNTTGG	2 cut(s)	437, 469
AloI	GAACNNNNNNTCC	2 cut(s)	210, 242
Alw26I	GTCTC	1 cut(s)	404
AlwI	GGATC	1 cut(s)	646
AlwNI	CAGNNNCTG	1 cut(s)	353
Ama87I	CYCGRG	1 cut(s)	509
AoxI	GGCC	5 cut(s)	146, 195, 332, 436, 931
ApeKI	GCWGC	8 cut(s)	98, 350, 359, 410, 464, 611, 787, 799
ApoI	RAATTY	2 cut(s)	296, 694
ArsI	GACNNNNNNTTYG	2 cut(s)	210, 242
AspLEI	GCGC	2 cut(s)	165, 544
AspS9I	GGNCC	3 cut(s)	437, 678, 734
AsuC2I	CCSGG	1 cut(s)	732
AsuHPI	GGTGA	5 cut(s)	259, 763, 817, 859, 883
AsuII	TTCGAA	1 cut(s)	229
AvaI	CYCGRG	1 cut(s)	509
AvaII	GGWCC	2 cut(s)	678, 734
BaeGI	GKGCMC	1 cut(s)	486
BanI	GGYRCC	2 cut(s)	431, 793
BbvI	GCAGC	8 cut(s)	110, 346, 362, 397, 451, 623, 786, 799
BccI	CCATC	1 cut(s)	525
BceAI	ACGGC	2 cut(s)	445, 946
BcgI	CGANNNNNNTGC	2 cut(s)	917, 951
BciT130I	CCWGG	1 cut(s)	827
BcnI	CCSGG	1 cut(s)	732
BcoDI	GTCTC	1 cut(s)	404
BfaI	CTAG	4 cut(s)	102, 309, 330, 500
BfmI	CTRYAG	3 cut(s)	360, 411, 761
BfuAI	ACCTGC	2 cut(s)	368, 782
Bme1390I	CCNGG	2 cut(s)	732, 827
Bme18I	GGWCC	2 cut(s)	678, 734
BmeT110I	CYCGRG	1 cut(s)	509
BmgT120I	GGNCC	3 cut(s)	437, 678, 734
BmiI	GGNNCC	5 cut(s)	433, 515, 585, 795, 960
BmrFI	CCNGG	2 cut(s)	732, 827
BmrI	ACTGGG	1 cut(s)	951
BmsI	GCATC	5 cut(s)	132, 634, 895, 898, 933
BmuI	ACTGGG	1 cut(s)	951
BpmI	CTGGAG	1 cut(s)	492
Bpu10I	CCTNAGC	1 cut(s)	568
Bpu14I	TTCGAA	1 cut(s)	229
BpuEI	CTTGAG	2 cut(s)	390, 848
BpuMI	CCSGG	1 cut(s)	732
BsaBI	GATNNNNATC	1 cut(s)	53
BsaJI	CCNNGG	2 cut(s)	674, 737
BsaXI	ACNNNNNCTCC	2 cut(s)	192, 222
Bsc4I	CCNNNNNNNGG	5 cut(s)	120, 377, 606, 607, 738
Bse118I	RCCGGY	1 cut(s)	434
Bse1I	ACTGG	1 cut(s)	946
Bse8I	GATNNNNATC	1 cut(s)	53
BseBI	CCWGG	1 cut(s)	827
BseDI	CCNNGG	2 cut(s)	674, 737
BseGI	GGATG	2 cut(s)	34, 886
BseJI	GATNNNNATC	1 cut(s)	53
BseLI	CCNNNNNNNGG	5 cut(s)	120, 377, 606, 607, 738
BseMII	CTCAG	2 cut(s)	810, 884
BseNI	ACTGG	1 cut(s)	946
BseSI	GKGCMC	1 cut(s)	486
BseXI	GCAGC	8 cut(s)	110, 346, 362, 397, 451, 623, 786, 799
Bsh1236I	CGCG	2 cut(s)	163, 544
BshFI	GGCC	5 cut(s)	148, 197, 334, 438, 933
BshNI	GGYRCC	2 cut(s)	431, 793
BsiHKCI	CYCGRG	1 cut(s)	509
BsiSI	CCGG	4 cut(s)	198, 338, 435, 732
BslI	CCNNNNNNNGG	5 cut(s)	120, 377, 606, 607, 738
BsmAI	GTCTC	1 cut(s)	404
BsmI	GAATGC	1 cut(s)	669
BsnI	GGCC	5 cut(s)	148, 197, 334, 438, 933
BsoBI	CYCGRG	1 cut(s)	509
Bsp119I	TTCGAA	1 cut(s)	229
Bsp1286I	GDGCHC	1 cut(s)	486
Bsp1407I	TGTACA	1 cut(s)	659
Bsp143I	GATC	3 cut(s)	651, 873, 948
BspACI	CCGC	6 cut(s)	4, 145, 161, 335, 440, 797
BspANI	GGCC	5 cut(s)	148, 197, 334, 438, 933
BspCNI	CTCAG	2 cut(s)	811, 885
BspFNI	CGCG	2 cut(s)	163, 544
BspLI	GGNNCC	5 cut(s)	433, 515, 585, 795, 960
BspMAI	CTGCAG	2 cut(s)	364, 415
BspMI	ACCTGC	2 cut(s)	368, 782
BspPI	GGATC	1 cut(s)	646
BspT104I	TTCGAA	1 cut(s)	229
BspT107I	GGYRCC	2 cut(s)	431, 793
BsrFI	RCCGGY	1 cut(s)	434
BsrGI	TGTACA	1 cut(s)	659
BsrI	ACTGG	1 cut(s)	946
BssAI	RCCGGY	1 cut(s)	434
BssECI	CCNNGG	2 cut(s)	674, 737
BssMI	GATC	3 cut(s)	651, 873, 948
BssT1I	CCWWGG	2 cut(s)	674, 737
Bst2UI	CCWGG	1 cut(s)	827
Bst4CI	ACNGT	5 cut(s)	19, 35, 325, 659, 871
BstAPI	GCANNNNNTGC	1 cut(s)	793
BstAUI	TGTACA	1 cut(s)	659
BstBI	TTCGAA	1 cut(s)	229
BstC8I	GCNNGC	1 cut(s)	440
BstDEI	CTNAG	3 cut(s)	568, 819, 893
BstEII	GGTNACC	1 cut(s)	366
BstENI	CCTNNNNNAGG	1 cut(s)	375
BstF5I	GGATG	2 cut(s)	34, 886
BstFNI	CGCG	2 cut(s)	163, 544
BstHHI	GCGC	2 cut(s)	165, 544
BstKTI	GATC	3 cut(s)	654, 876, 951
BstMAI	GTCTC	1 cut(s)	404
BstMBI	GATC	3 cut(s)	651, 873, 948
BstMWI	GCNNNNNNNGC	7 cut(s)	299, 356, 359, 793, 796, 908, 930
BstNI	CCWGG	1 cut(s)	827
BstNSI	RCATGY	1 cut(s)	44
BstPI	GGTNACC	1 cut(s)	366
BstSCI	CCNGG	2 cut(s)	730, 825
BstSFI	CTRYAG	3 cut(s)	360, 411, 761
BstSLI	GKGCMC	1 cut(s)	486
BstUI	CGCG	2 cut(s)	163, 544
BstV1I	GCAGC	8 cut(s)	110, 346, 362, 397, 451, 623, 786, 799
BstXI	CCANNNNNNTGG	1 cut(s)	941
BsuRI	GGCC	5 cut(s)	148, 197, 334, 438, 933
BtgZI	GCGATG	1 cut(s)	204
BtsCI	GGATG	2 cut(s)	34, 886
BtsIMutI	CAGTG	1 cut(s)	655
BveI	ACCTGC	2 cut(s)	368, 782
Cac8I	GCNNGC	1 cut(s)	440
CaiI	CAGNNNCTG	1 cut(s)	353
CfoI	GCGC	2 cut(s)	165, 544
Cfr10I	RCCGGY	1 cut(s)	434
Cfr13I	GGNCC	3 cut(s)	437, 678, 734
Csp6I	GTAC	2 cut(s)	12, 660
CviAII	CATG	3 cut(s)	41, 521, 935
CviQI	GTAC	2 cut(s)	12, 660
DdeI	CTNAG	3 cut(s)	568, 819, 893
DpnI	GATC	3 cut(s)	653, 875, 950
DpnII	GATC	3 cut(s)	651, 873, 948
EaeI	YGGCCR	2 cut(s)	195, 931
Eco130I	CCWWGG	2 cut(s)	674, 737
Eco47I	GGWCC	2 cut(s)	678, 734
Eco57I	CTGAAG	3 cut(s)	375, 624, 924
Eco88I	CYCGRG	1 cut(s)	509
Eco91I	GGTNACC	1 cut(s)	366
EcoNI	CCTNNNNNAGG	1 cut(s)	375
EcoO65I	GGTNACC	1 cut(s)	366
EcoRII	CCWGG	1 cut(s)	825
EcoT14I	CCWWGG	2 cut(s)	674, 737
ErhI	CCWWGG	2 cut(s)	674, 737
FaeI	CATG	3 cut(s)	44, 524, 938
FatI	CATG	3 cut(s)	40, 520, 934
FauI	CCCGC	2 cut(s)	168, 447
FokI	GGATG	2 cut(s)	41, 873
FspBI	CTAG	4 cut(s)	102, 309, 330, 500
GlaI	GCGC	2 cut(s)	164, 543
GsuI	CTGGAG	1 cut(s)	492
HaeIII	GGCC	5 cut(s)	148, 197, 334, 438, 933
HapII	CCGG	4 cut(s)	198, 338, 435, 732
HhaI	GCGC	2 cut(s)	165, 544
Hin1II	CATG	3 cut(s)	44, 524, 938
Hin6I	GCGC	2 cut(s)	163, 542
HinP1I	GCGC	2 cut(s)	163, 542
HinfI	GANTC	6 cut(s)	49, 109, 417, 700, 808, 878
HpaII	CCGG	4 cut(s)	198, 338, 435, 732
HphI	GGTGA	5 cut(s)	259, 763, 817, 859, 883
Hpy166II	GTNNAC	1 cut(s)	681
Hpy188I	TCNGA	7 cut(s)	66, 108, 132, 618, 636, 693, 894
Hpy188III	TCNNGA	5 cut(s)	471, 511, 562, 587, 865
Hpy8I	GTNNAC	1 cut(s)	681
Hpy99I	CGWCG	1 cut(s)	932
HpyAV	CCTTC	5 cut(s)	599, 636, 706, 844, 848
HpyCH4III	ACNGT	5 cut(s)	19, 35, 325, 659, 871
HpyCH4V	TGCA	6 cut(s)	40, 302, 362, 377, 413, 491
HpyF10VI	GCNNNNNNNGC	7 cut(s)	299, 356, 359, 793, 796, 908, 930
HpyF3I	CTNAG	3 cut(s)	568, 819, 893
Hsp92II	CATG	3 cut(s)	44, 524, 938
HspAI	GCGC	2 cut(s)	163, 542
Kzo9I	GATC	3 cut(s)	651, 873, 948
LmnI	GCTCC	3 cut(s)	539, 782, 958
Lsp1109I	GCAGC	8 cut(s)	110, 346, 362, 397, 451, 623, 786, 799
LweI	GCATC	5 cut(s)	132, 634, 895, 898, 933
MaeI	CTAG	4 cut(s)	102, 309, 330, 500
MaeIII	GTNAC	5 cut(s)	325, 366, 457, 523, 545
MalI	GATC	3 cut(s)	653, 875, 950
MboI	GATC	3 cut(s)	651, 873, 948
MboII	GAAGA	3 cut(s)	79, 917, 958
MhlI	GDGCHC	1 cut(s)	486
MluCI	AATT	5 cut(s)	89, 126, 261, 296, 694
MlyI	GAGTC	3 cut(s)	426, 709, 872
MmeI	TCCRAC	3 cut(s)	196, 520, 614
MseI	TTAA	1 cut(s)	687
MspA1I	CMGCKG	3 cut(s)	353, 790, 799
MspI	CCGG	4 cut(s)	198, 338, 435, 732
MspR9I	CCNGG	2 cut(s)	732, 827
Mva1269I	GAATGC	1 cut(s)	669
MvaI	CCWGG	1 cut(s)	827
MvnI	CGCG	2 cut(s)	163, 544
MwoI	GCNNNNNNNGC	7 cut(s)	299, 356, 359, 793, 796, 908, 930
NciI	CCSGG	1 cut(s)	732
NdeII	GATC	3 cut(s)	651, 873, 948
NlaIII	CATG	3 cut(s)	44, 524, 938
NlaIV	GGNNCC	5 cut(s)	433, 515, 585, 795, 960
NmuCI	GTSAC	1 cut(s)	523
NspI	RCATGY	1 cut(s)	44
NspV	TTCGAA	1 cut(s)	229
PaqCI	CACCTGC	1 cut(s)	782
PctI	GAATGC	1 cut(s)	669
PfeI	GAWTC	3 cut(s)	49, 109, 808
PleI	GAGTC	3 cut(s)	425, 708, 872
PpsI	GAGTC	3 cut(s)	425, 708, 872
Psp6I	CCWGG	1 cut(s)	825
PspEI	GGTNACC	1 cut(s)	366
PspGI	CCWGG	1 cut(s)	825
PspN4I	GGNNCC	5 cut(s)	433, 515, 585, 795, 960
PspPI	GGNCC	3 cut(s)	437, 678, 734
PstI	CTGCAG	2 cut(s)	364, 415
PstNI	CAGNNNCTG	1 cut(s)	353
PvuII	CAGCTG	2 cut(s)	353, 790
RsaI	GTAC	2 cut(s)	13, 661
RsaNI	GTAC	2 cut(s)	12, 660
SaqAI	TTAA	1 cut(s)	687
Sau3AI	GATC	3 cut(s)	651, 873, 948
Sau96I	GGNCC	3 cut(s)	437, 678, 734
SchI	GAGTC	3 cut(s)	426, 709, 872
ScrFI	CCNGG	2 cut(s)	732, 827
SduI	GDGCHC	1 cut(s)	486
SfaNI	GCATC	5 cut(s)	132, 634, 895, 898, 933
SfcI	CTRYAG	3 cut(s)	360, 411, 761
SfuI	TTCGAA	1 cut(s)	229
SinI	GGWCC	2 cut(s)	678, 734
SmlI	CTYRAG	2 cut(s)	405, 863
SmoI	CTYRAG	2 cut(s)	405, 863
Sse9I	AATT	5 cut(s)	89, 126, 261, 296, 694
SsiI	CCGC	6 cut(s)	4, 145, 161, 335, 440, 797
SspMI	CTAG	4 cut(s)	102, 309, 330, 500
StyD4I	CCNGG	2 cut(s)	730, 825
StyI	CCWWGG	2 cut(s)	674, 737
TaaI	ACNGT	5 cut(s)	19, 35, 325, 659, 871
TaqI	TCGA	4 cut(s)	210, 229, 876, 927
TasI	AATT	5 cut(s)	89, 126, 261, 296, 694
TatI	WGTACW	2 cut(s)	11, 659
TauI	GCSGC	3 cut(s)	148, 337, 799
TfiI	GAWTC	3 cut(s)	49, 109, 808
Tru1I	TTAA	1 cut(s)	687
Tru9I	TTAA	1 cut(s)	687
TscAI	CASTG	1 cut(s)	662
TseFI	GTSAC	1 cut(s)	523
TseI	GCWGC	8 cut(s)	98, 350, 359, 410, 464, 611, 787, 799
Tsp45I	GTSAC	1 cut(s)	523
TspRI	CASTG	1 cut(s)	662
VpaK11BI	GGWCC	2 cut(s)	678, 734
XagI	CCTNNNNNAGG	1 cut(s)	375
XapI	RAATTY	2 cut(s)	296, 694
XceI	RCATGY	1 cut(s)	44
XcmI	CCANNNNNNNNNTGG	1 cut(s)	787
XspI	CTAG	4 cut(s)	102, 309, 330, 500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.