pycom05g15620

Quinone-oxidoreductase homolog, chloroplastic

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Reverse (-)
19141676 .. 19143330
1655 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g15620.1

Sequence Viewer

Length: 996 bp
ATGGCAGCAATGGCGTCGAAGCTTATGCATGCGGTTCAGTACGACGGCTATGGCGGAGGAGCTTCTGGTTTAAAGCATGTAGAGGTTCCGATCCCCACTCCGACGAAAGGCGAGGTTTTGCTGAAACTGGAAGCAGCCAGTATAAACCCAATTGATTGGAAAATTCAGAAAGGCATGTTGCGGCCTTTTTTGCCCCGCAAATTCCCTTATGCACCCGTTAGTGATGTTGCTGGAGAGGTTGTAGAAGTTGGACAGGGGGTCCAAAAGTTCAAACCTGGCGACAAGGTTGTGGCATATCTTTCCCAAGCTGGCGGTGGACTGGCCGAGTACACTGCAGCTACTGAGAACTTGACAGTGACCAGGCCACCTGAAGTATCAGCAGCTGAAGGTGCAGGCTTACCTATTGCTGGCCTCACAGCTCACCAGTGTCTCACGCAGGCTGCTGGGGTCAAGCTGGACGGAAGTGGCCAGCAAAAGAACATACTGATTACTGCTGCCTCTGGTGGTGTGGGTCAATATGCAGTCCAATTAGCAAAGCTCGGAAACACGCATGTTACAGCCACTTGTGGAGCTCGTAACATTGAATTTGTCAAGAGCTTAGGGGCAGATGAGGTTCTTGACTACAAGACCCCAGAAGGAGCAGCTCTGAATAGCCCGTCTGGGCGGAAATATGATGCCGTGGTCCACTGTGCAACCGGCATTCCCTGGTCAACTTTTGAGCCTAATTTGAGCGCCAACGGGAAGGTGATAGACATTACTCCCAGTCCAAGTGCCTTGGTTACTTTTGCTCTGAAGAAACTCACCTTCTCGAAGAAGCAGCTGGTGCCGCTGCTCATGAGTGCCAAGGCTGAGAACCTGGAGTATCTCGTTAAGTTGGTGAAGGAAGGAAAGCTCAGGACAGTGATTGATTCGACATATCCTCTGAGCAAGGCTGAAGATGCTTGGGCTAAGAGTATCAGTGGACATGCGACCGGGAAGATCATCGTCGAGCCTTAA

Protein Analysis

332

Amino Acids

34.69

Weight (kDa)

8.89

Isoelectric Point (pI)

28.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 36 - 120 9.7e-16 Alcohol dehydrogenase GroES-like domain
ADH_zinc_N PF00107 169 - 293 5.6e-10 Zinc-binding dehydrogenase
ADH_zinc_N_2 PF13602 200 - 329 6.4e-24 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000313)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G13010
fragaria_vesca FvH4_2g18240 FvH4_2g18280 FvH4_2g18310 FvH4_2g18320 FvH4_2g18330 FvH4_2g18340 FvH4_2g18350
malus_domestica MD05G1166800.v1.1 MD05G1167200.v1.1 MD05G1167300.v1.1 MD05G1167400.v1.1 MD05G1167600.v1.1 MD05G1168000.v1.1 MD05G1168200.v1.1 MD05G1168400.v1.1 MD05G1168600.v1.1 MD05G1168700.v1.1 MD05G1168800.v1.1 MD10G1156900.v1.1 MD10G1157000.v1.1 MD10G1157100.v1.1 MD10G1157200.v1.1
prunus_persica Prupe.8G195100_v2.0.a1 Prupe.8G195100_v2.0.a1 Prupe.8G195300_v2.0.a1 Prupe.8G195600_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G196000_v2.0.a1 Prupe.8G196000_v2.0.a1
pyrus_communis pycom05g15560 pycom05g15600 pycom05g15610 pycom05g15620 pycom05g15630 pycom10g13550 pycom10g13570
rosa_chinensis RchiOBHm_Chr6g0283611 RchiOBHm_Chr6g0283631 RchiOBHm_Chr6g0283641 RchiOBHm_Chr6g0283661 RchiOBHm_Chr6g0283681 RchiOBHm_Chr6g0283691 RchiOBHm_Chr6g0283701 RchiOBHm_Chr6g0283711 RchiOBHm_Chr6g0283721
rosa_laevigata RLG00000012804 RLG00000012807 RLG00000012811
rosa_multiflora Rmu_co8263921.1_g000001 Rmu_sc0001521.1_g000009 Rmu_sc0002906.1_g000002 Rmu_sc0002906.1_g000011 Rmu_sc0002906.1_g000013 Rmu_sc0005719.1_g000016 Rmu_sc0005719.1_g000022 Rmu_sc0029460.1_g000001
rosa_roxburghii Rroxscaffold_7G00185240 Rroxscaffold_7G00185250 Rroxscaffold_7G00185270 Rroxscaffold_7G00185280 Rroxscaffold_7G00185290 Rroxscaffold_7G00185330 Rroxscaffold_7G00185350
rosa_rugosa Rorug06G0156100 Rorug06G0156300 Rorug06G0156400 Rorug06G0156500 Rorug06G0156600 Rorug06G0156700 Rorug06G0156800 Rorug06G0156900 Rorug06G0157000
rosa_samantha Rh6AG267900 Rh6AG268100 Rh6AG268200 Rh6AG268400 Rh6AG268600 Rh6AG268700 Rh6AG268900 Rh6AG269100 Rh6BG270700 Rh6BG270900 Rh6BG271000 Rh6BG271200 Rh6BG271400 Rh6BG271500 Rh6CG270200 Rh6CG270400 Rh6CG270500 Rh6CG270800 Rh6CG270900 Rh6CG271000 Rh6CG271100 Rh6CG271300 Rh6DG263900 Rh6DG264100 Rh6DG264200 Rh6DG264400 Rh6DG264600 Rh6DG264800 Rh6DG265200
rosa_wichuraiana Rw6G023210 Rw6G023220 Rw6G023230 Rw6G023240 Rw6G023250 Rw6G023260 Rw6G023270 Rw6G023280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 823
AciI CCGC 7 cut(s) 32, 54, 181, 196, 312, 664, 827
AclWI GGATC 1 cut(s) 85
AcoI YGGCCR 2 cut(s) 321, 466
AcsI RAATTY 3 cut(s) 162, 200, 584
AcuI CTGAAG 4 cut(s) 390, 405, 812, 954
AcyI GRCGYC 1 cut(s) 14
AfaI GTAC 2 cut(s) 41, 329
AfiI CCNNNNNNNGG 2 cut(s) 107, 407
AgsI TTSAA 2 cut(s) 271, 584
AhdI GACNNNNNGTC 1 cut(s) 257
AjnI CCWGG 4 cut(s) 274, 359, 704, 855
Alw21I GWGCWC 1 cut(s) 574
Alw26I GTCTC 1 cut(s) 434
AlwI GGATC 1 cut(s) 85
AlwNI CAGNNNCTG 2 cut(s) 341, 383
AoxI GGCC 5 cut(s) 182, 321, 362, 409, 466
ApeKI GCWGC 9 cut(s) 5, 134, 335, 380, 440, 494, 641, 817, 829
ApoI RAATTY 3 cut(s) 162, 200, 584
AspLEI GCGC 1 cut(s) 734
AspS9I GGNCC 2 cut(s) 259, 682
AsuC2I CCSGG 1 cut(s) 973
AsuHPI GGTGA 4 cut(s) 413, 757, 793, 889
AvaII GGWCC 2 cut(s) 259, 682
BalI TGGCCA 1 cut(s) 468
BanI GGYRCC 1 cut(s) 823
BanII GRGCYC 1 cut(s) 574
Bbv12I GWGCWC 1 cut(s) 574
BbvI GCAGC 9 cut(s) 17, 146, 347, 392, 427, 481, 653, 816, 829
BceAI ACGGC 2 cut(s) 61, 662
BcgI CGANNNNNNTGC 5 cut(s) 7, 31, 41, 314, 348
BciT130I CCWGG 4 cut(s) 276, 361, 706, 857
BcnI CCSGG 1 cut(s) 973
BcoDI GTCTC 1 cut(s) 434
BfmI CTRYAG 1 cut(s) 333
BfoI RGCGCY 1 cut(s) 735
Bme1390I CCNGG 5 cut(s) 276, 361, 706, 857, 973
Bme18I GGWCC 2 cut(s) 259, 682
BmeRI GACNNNNNGTC 1 cut(s) 257
BmgT120I GGNCC 2 cut(s) 259, 682
BmiI GGNNCC 3 cut(s) 87, 260, 825
BmrFI CCNGG 5 cut(s) 276, 361, 706, 857, 973
BmrI ACTGGG 1 cut(s) 756
BmsI GCATC 2 cut(s) 664, 928
BmuI ACTGGG 1 cut(s) 756
BpmI CTGGAG 2 cut(s) 252, 878
Bpu10I CCTNAGC 2 cut(s) 598, 893
BpuMI CCSGG 1 cut(s) 973
BsaHI GRCGYC 1 cut(s) 14
BsaJI CCNNGG 4 cut(s) 678, 704, 774, 843
BsaXI ACNNNNNCTCC 2 cut(s) 225, 255
Bsc4I CCNNNNNNNGG 2 cut(s) 107, 407
Bse118I RCCGGY 1 cut(s) 695
Bse1I ACTGG 5 cut(s) 132, 138, 324, 424, 762
Bse3DI GCAATG 1 cut(s) 15
BseBI CCWGG 4 cut(s) 276, 361, 706, 857
BseDI CCNNGG 4 cut(s) 678, 704, 774, 843
BseLI CCNNNNNNNGG 2 cut(s) 107, 407
BseMI GCAATG 1 cut(s) 15
BseMII CTCAG 4 cut(s) 333, 840, 907, 914
BseNI ACTGG 5 cut(s) 132, 138, 324, 424, 762
BseRI GAGGAG 1 cut(s) 72
BseXI GCAGC 9 cut(s) 17, 146, 347, 392, 427, 481, 653, 816, 829
BseYI CCCAGC 1 cut(s) 443
BsgI GTGCAG 1 cut(s) 411
Bsh1285I CGRYCG 1 cut(s) 972
BshFI GGCC 5 cut(s) 184, 323, 364, 411, 468
BshNI GGYRCC 1 cut(s) 823
BsiEI CGRYCG 1 cut(s) 972
BsiHKAI GWGCWC 1 cut(s) 574
BsiSI CCGG 2 cut(s) 696, 972
BslI CCNNNNNNNGG 2 cut(s) 107, 407
BsmAI GTCTC 1 cut(s) 434
BsmI GAATGC 1 cut(s) 699
BsnI GGCC 5 cut(s) 184, 323, 364, 411, 468
Bsp1286I GDGCHC 1 cut(s) 574
Bsp143I GATC 2 cut(s) 90, 978
BspACI CCGC 7 cut(s) 32, 54, 181, 196, 312, 664, 827
BspANI GGCC 5 cut(s) 184, 323, 364, 411, 468
BspCNI CTCAG 4 cut(s) 334, 841, 906, 915
BspHI TCATGA 1 cut(s) 834
BspLI GGNNCC 3 cut(s) 87, 260, 825
BspMAI CTGCAG 1 cut(s) 337
BspPI GGATC 1 cut(s) 85
BspT107I GGYRCC 1 cut(s) 823
BsrDI GCAATG 1 cut(s) 15
BsrFI RCCGGY 1 cut(s) 695
BsrI ACTGG 5 cut(s) 132, 138, 324, 424, 762
BssAI RCCGGY 1 cut(s) 695
BssECI CCNNGG 4 cut(s) 678, 704, 774, 843
BssMI GATC 2 cut(s) 90, 978
BssNI GRCGYC 1 cut(s) 14
BssT1I CCWWGG 2 cut(s) 774, 843
Bst2UI CCWGG 4 cut(s) 276, 361, 706, 857
Bst4CI ACNGT 3 cut(s) 355, 689, 901
BstACI GRCGYC 1 cut(s) 14
BstAPI GCANNNNNTGC 1 cut(s) 823
BstC8I GCNNGC 6 cut(s) 30, 310, 394, 409, 438, 470
BstDEI CTNAG 6 cut(s) 342, 598, 849, 893, 923, 948
BstDSI CCRYGG 1 cut(s) 678
BstH2I RGCGCY 1 cut(s) 735
BstHHI GCGC 1 cut(s) 734
BstKTI GATC 2 cut(s) 93, 981
BstMAI GTCTC 1 cut(s) 434
BstMBI GATC 2 cut(s) 90, 978
BstMCI CGRYCG 1 cut(s) 972
BstMWI GCNNNNNNNGC 6 cut(s) 11, 190, 389, 823, 826, 938
BstNI CCWGG 4 cut(s) 276, 361, 706, 857
BstNSI RCATGY 5 cut(s) 32, 80, 178, 554, 968
BstSCI CCNGG 5 cut(s) 274, 359, 704, 855, 971
BstSFI CTRYAG 1 cut(s) 333
BstV1I GCAGC 9 cut(s) 17, 146, 347, 392, 427, 481, 653, 816, 829
BstXI CCANNNNNNTGG 1 cut(s) 156
BsuRI GGCC 5 cut(s) 184, 323, 364, 411, 468
BtgI CCRYGG 1 cut(s) 678
BtsI GCAGTG 1 cut(s) 330
BtsIMutI CAGTG 6 cut(s) 330, 360, 431, 685, 906, 964
Cac8I GCNNGC 6 cut(s) 30, 310, 394, 409, 438, 470
CaiI CAGNNNCTG 2 cut(s) 341, 383
CciI TCATGA 1 cut(s) 834
CfoI GCGC 1 cut(s) 734
Cfr10I RCCGGY 1 cut(s) 695
Cfr13I GGNCC 2 cut(s) 259, 682
CseI GACGC 1 cut(s) 3
Csp6I GTAC 2 cut(s) 40, 328
CviAII CATG 6 cut(s) 29, 77, 175, 551, 835, 965
CviQI GTAC 2 cut(s) 40, 328
DdeI CTNAG 6 cut(s) 342, 598, 849, 893, 923, 948
DpnI GATC 2 cut(s) 92, 980
DpnII GATC 2 cut(s) 90, 978
DraI TTTAAA 1 cut(s) 72
DriI GACNNNNNGTC 1 cut(s) 257
EaeI YGGCCR 2 cut(s) 321, 466
Eam1105I GACNNNNNGTC 1 cut(s) 257
EciI GGCGGA 2 cut(s) 69, 679
Ecl136II GAGCTC 1 cut(s) 572
Eco130I CCWWGG 2 cut(s) 774, 843
Eco24I GRGCYC 1 cut(s) 574
Eco47I GGWCC 2 cut(s) 259, 682
Eco53kI GAGCTC 1 cut(s) 572
Eco57I CTGAAG 4 cut(s) 390, 405, 812, 954
EcoICRI GAGCTC 1 cut(s) 572
EcoRII CCWGG 4 cut(s) 274, 359, 704, 855
EcoT14I CCWWGG 2 cut(s) 774, 843
EcoT22I ATGCAT 1 cut(s) 30
EcoT38I GRGCYC 1 cut(s) 574
ErhI CCWWGG 2 cut(s) 774, 843
FaeI CATG 6 cut(s) 32, 80, 178, 554, 838, 968
FatI CATG 6 cut(s) 28, 76, 174, 550, 834, 964
FauI CCCGC 1 cut(s) 203
FriOI GRGCYC 1 cut(s) 574
GlaI GCGC 1 cut(s) 733
GsaI CCCAGC 1 cut(s) 447
GsuI CTGGAG 2 cut(s) 252, 878
HaeII RGCGCY 1 cut(s) 735
HaeIII GGCC 5 cut(s) 184, 323, 364, 411, 468
HapII CCGG 2 cut(s) 696, 972
HgaI GACGC 1 cut(s) 3
HhaI GCGC 1 cut(s) 734
Hin1I GRCGYC 1 cut(s) 14
Hin1II CATG 6 cut(s) 32, 80, 178, 554, 838, 968
Hin6I GCGC 1 cut(s) 732
HinP1I GCGC 1 cut(s) 732
HincII GTYRAC 1 cut(s) 711
HindII GTYRAC 1 cut(s) 711
HindIII AAGCTT 1 cut(s) 20
HinfI GANTC 1 cut(s) 908
HpaII CCGG 2 cut(s) 696, 972
HphI GGTGA 4 cut(s) 413, 757, 793, 889
Hpy166II GTNNAC 5 cut(s) 317, 330, 685, 711, 962
Hpy188I TCNGA 7 cut(s) 90, 102, 168, 542, 648, 792, 924
Hpy188III TCNNGA 5 cut(s) 592, 617, 808, 835, 895
Hpy8I GTNNAC 5 cut(s) 317, 330, 685, 711, 962
Hpy99I CGWCG 4 cut(s) 19, 47, 106, 989
HpyAV CCTTC 6 cut(s) 380, 629, 736, 814, 874, 878
HpyCH4III ACNGT 3 cut(s) 355, 689, 901
HpyCH4V TGCA 6 cut(s) 28, 212, 335, 392, 521, 692
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 190, 389, 823, 826, 938
HpyF3I CTNAG 6 cut(s) 342, 598, 849, 893, 923, 948
Hsp92I GRCGYC 1 cut(s) 14
Hsp92II CATG 6 cut(s) 32, 80, 178, 554, 838, 968
HspAI GCGC 1 cut(s) 732
Kzo9I GATC 2 cut(s) 90, 978
LmnI GCTCC 3 cut(s) 59, 569, 638
Lsp1109I GCAGC 9 cut(s) 17, 146, 347, 392, 427, 481, 653, 816, 829
LweI GCATC 2 cut(s) 664, 928
MaeIII GTNAC 4 cut(s) 355, 553, 575, 778
MalI GATC 2 cut(s) 92, 980
MboI GATC 2 cut(s) 90, 978
MboII GAAGA 4 cut(s) 805, 823, 947, 988
MfeI CAATTG 1 cut(s) 150
MhlI GDGCHC 1 cut(s) 574
MlsI TGGCCA 1 cut(s) 468
MluCI AATT 6 cut(s) 150, 162, 200, 527, 584, 724
MluNI TGGCCA 1 cut(s) 468
MmeI TCCRAC 2 cut(s) 125, 229
MnlI CCTC 8 cut(s) 50, 76, 106, 229, 422, 508, 604, 930
Mox20I TGGCCA 1 cut(s) 468
Mph1103I ATGCAT 1 cut(s) 30
MscI TGGCCA 1 cut(s) 468
MseI TTAA 3 cut(s) 71, 870, 994
Msp20I TGGCCA 1 cut(s) 468
MspA1I CMGCKG 3 cut(s) 383, 820, 829
MspI CCGG 2 cut(s) 696, 972
MspR9I CCNGG 5 cut(s) 276, 361, 706, 857, 973
MunI CAATTG 1 cut(s) 150
Mva1269I GAATGC 1 cut(s) 699
MvaI CCWGG 4 cut(s) 276, 361, 706, 857
MwoI GCNNNNNNNGC 6 cut(s) 11, 190, 389, 823, 826, 938
NciI CCSGG 1 cut(s) 973
NdeII GATC 2 cut(s) 90, 978
NlaIII CATG 6 cut(s) 32, 80, 178, 554, 838, 968
NlaIV GGNNCC 3 cut(s) 87, 260, 825
NmeAIII GCCGAG 1 cut(s) 349
NmuCI GTSAC 1 cut(s) 355
NsiI ATGCAT 1 cut(s) 30
NspI RCATGY 5 cut(s) 32, 80, 178, 554, 968
PaeI GCATGC 1 cut(s) 32
PagI TCATGA 1 cut(s) 834
PctI GAATGC 1 cut(s) 699
PfeI GAWTC 1 cut(s) 908
Psp124BI GAGCTC 1 cut(s) 574
Psp6I CCWGG 4 cut(s) 274, 359, 704, 855
PspFI CCCAGC 1 cut(s) 443
PspGI CCWGG 4 cut(s) 274, 359, 704, 855
PspN4I GGNNCC 3 cut(s) 87, 260, 825
PspPI GGNCC 2 cut(s) 259, 682
PstI CTGCAG 1 cut(s) 337
PstNI CAGNNNCTG 2 cut(s) 341, 383
PvuII CAGCTG 2 cut(s) 383, 820
RsaI GTAC 2 cut(s) 41, 329
RsaNI GTAC 2 cut(s) 40, 328
SacI GAGCTC 1 cut(s) 574
SaqAI TTAA 3 cut(s) 71, 870, 994
Sau3AI GATC 2 cut(s) 90, 978
Sau96I GGNCC 2 cut(s) 259, 682
ScrFI CCNGG 5 cut(s) 276, 361, 706, 857, 973
SduI GDGCHC 1 cut(s) 574
SfaNI GCATC 2 cut(s) 664, 928
SfcI CTRYAG 1 cut(s) 333
SinI GGWCC 2 cut(s) 259, 682
SphI GCATGC 1 cut(s) 32
Sse9I AATT 6 cut(s) 150, 162, 200, 527, 584, 724
SsiI CCGC 7 cut(s) 32, 54, 181, 196, 312, 664, 827
SstI GAGCTC 1 cut(s) 574
StyD4I CCNGG 5 cut(s) 274, 359, 704, 855, 971
StyI CCWWGG 2 cut(s) 774, 843
TaaI ACNGT 3 cut(s) 355, 689, 901
TaqI TCGA 4 cut(s) 17, 809, 911, 987
TasI AATT 6 cut(s) 150, 162, 200, 527, 584, 724
TatI WGTACW 1 cut(s) 327
TauI GCSGC 2 cut(s) 184, 829
TfiI GAWTC 1 cut(s) 908
Tru1I TTAA 3 cut(s) 71, 870, 994
Tru9I TTAA 3 cut(s) 71, 870, 994
TscAI CASTG 6 cut(s) 337, 360, 431, 692, 906, 964
TseFI GTSAC 1 cut(s) 355
TseI GCWGC 9 cut(s) 5, 134, 335, 380, 440, 494, 641, 817, 829
Tsp45I GTSAC 1 cut(s) 355
TspGWI ACGGA 1 cut(s) 474
TspRI CASTG 6 cut(s) 337, 360, 431, 692, 906, 964
VpaK11BI GGWCC 2 cut(s) 259, 682
XapI RAATTY 3 cut(s) 162, 200, 584
XceI RCATGY 5 cut(s) 32, 80, 178, 554, 968
XcmI CCANNNNNNNNNTGG 1 cut(s) 311
Zsp2I ATGCAT 1 cut(s) 30
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.