Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0000313

Physical Location & Seq

Genomic Coordinates Forward (+)

45687619 .. 45689351

Gene Structure 1733 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG265200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGAAAGCCATGGCGGTAAAGCTTATGCATGCGGTTCAATACAATAGTTATGGTGGAGGACCTTCTGGTTTAAAGACTGGAGGTGCATTTGCTGAGTATGCAACTGCTAAAGAGTGTTTCACGGCTACTAGGCCGCCTGAGGTTTCAGCAGCCGAAGCTGCCGGGTTACCTGTTGCTGGTCTCACAGCTCACCAGTGTCTCACTGAAGCCGCAGGAGTCAAGCTGGATGGCACAGGCCCTCAGAAGAACATATTGATTACCGCTGCCTCTGGAGGTGTGGGGCACTATGCAGTCCAACTAGCTAAACTAGGAAACACCCATGTCACGGCCACTTGTGGAGCTCGTAACATTGATTTCGTCAAGGGCTTGGGGGCTGATGAGGTTCTTGACTACAAGACCCCTGAAGGGGCAGCTCTGAGTAGCCCGTCTGGTCGGAAATATGATGCCGTGATCCACTGTGCAACAGCCATTCCTTGGTCTACTTTTAAGCCGAATTTGAGTCCAAATGGGAAGGTCATAGACATTAGTCCCAGTCTAAGTAACTGGCTCACTATGGCTGTAAACAAACTCACCTTCTCCAAGAAGCAGCTAGTGCAGCTGATGGTGAATCCCAAGGCTGAGAACCTGGATTATCTTGTTAAGTTGGTGAAGGAAGGAAAGCTCAAGACGGTGATTGACTCCAGACATCCTTTGAGCAAGGCTGAAGATGCTTGGGTTAAGAGTATCGATGGCCATGCTACTGGGAAAATCATTGTGGAGCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N_2

Protein Analysis

254

Amino Acids

26.65

Weight (kDa)

9.03

Isoelectric Point (pI)

34.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_zinc_N	PF00107	92 - 204	2.4e-09	Zinc-binding dehydrogenase
ADH_zinc_N_2	PF13602	123 - 252	8.1e-22	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13010
fragaria_vesca	FvH4_2g18240 FvH4_2g18280 FvH4_2g18310 FvH4_2g18320 FvH4_2g18330 FvH4_2g18340 FvH4_2g18350
malus_domestica	MD05G1166800.v1.1 MD05G1167200.v1.1 MD05G1167300.v1.1 MD05G1167400.v1.1 MD05G1167600.v1.1 MD05G1168000.v1.1 MD05G1168200.v1.1 MD05G1168400.v1.1 MD05G1168600.v1.1 MD05G1168700.v1.1 MD05G1168800.v1.1 MD10G1156900.v1.1 MD10G1157000.v1.1 MD10G1157100.v1.1 MD10G1157200.v1.1
prunus_persica	Prupe.8G195100_v2.0.a1 Prupe.8G195100_v2.0.a1 Prupe.8G195300_v2.0.a1 Prupe.8G195600_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G196000_v2.0.a1 Prupe.8G196000_v2.0.a1
pyrus_communis	pycom05g15560 pycom05g15600 pycom05g15610 pycom05g15620 pycom05g15630 pycom10g13550 pycom10g13570
rosa_chinensis	RchiOBHm_Chr6g0283611 RchiOBHm_Chr6g0283631 RchiOBHm_Chr6g0283641 RchiOBHm_Chr6g0283661 RchiOBHm_Chr6g0283681 RchiOBHm_Chr6g0283691 RchiOBHm_Chr6g0283701 RchiOBHm_Chr6g0283711 RchiOBHm_Chr6g0283721
rosa_laevigata	RLG00000012804 RLG00000012807 RLG00000012811
rosa_multiflora	Rmu_co8263921.1_g000001 Rmu_sc0001521.1_g000009 Rmu_sc0002906.1_g000002 Rmu_sc0002906.1_g000011 Rmu_sc0002906.1_g000013 Rmu_sc0005719.1_g000016 Rmu_sc0005719.1_g000022 Rmu_sc0029460.1_g000001
rosa_roxburghii	Rroxscaffold_7G00185240 Rroxscaffold_7G00185250 Rroxscaffold_7G00185270 Rroxscaffold_7G00185280 Rroxscaffold_7G00185290 Rroxscaffold_7G00185330 Rroxscaffold_7G00185350
rosa_rugosa	Rorug06G0156100 Rorug06G0156300 Rorug06G0156400 Rorug06G0156500 Rorug06G0156600 Rorug06G0156700 Rorug06G0156800 Rorug06G0156900 Rorug06G0157000
rosa_samantha	Rh6AG267900 Rh6AG268100 Rh6AG268200 Rh6AG268400 Rh6AG268600 Rh6AG268700 Rh6AG268900 Rh6AG269100 Rh6BG270700 Rh6BG270900 Rh6BG271000 Rh6BG271200 Rh6BG271400 Rh6BG271500 Rh6CG270200 Rh6CG270400 Rh6CG270500 Rh6CG270800 Rh6CG270900 Rh6CG271000 Rh6CG271100 Rh6CG271300 Rh6DG263900 Rh6DG264100 Rh6DG264200 Rh6DG264400 Rh6DG264600 Rh6DG264800 Rh6DG265200
rosa_wichuraiana	Rw6G023210 Rw6G023220 Rw6G023230 Rw6G023240 Rw6G023250 Rw6G023260 Rw6G023270 Rw6G023280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	474
AccI	GTMKAC	1 cut(s)	479
AciI	CCGC	5 cut(s)	14, 32, 134, 210, 261
AclWI	GGATC	1 cut(s)	445
AcoI	YGGCCR	2 cut(s)	327, 730
AcsI	RAATTY	1 cut(s)	493
AcuI	CTGAAG	3 cut(s)	225, 423, 723
AfiI	CCNNNNNNNGG	5 cut(s)	176, 325, 405, 406, 474
AgsI	TTSAA	1 cut(s)	38
AjnI	CCWGG	1 cut(s)	624
Alw21I	GWGCWC	1 cut(s)	343
Alw26I	GTCTC	2 cut(s)	185, 203
AlwI	GGATC	1 cut(s)	445
AoxI	GGCC	4 cut(s)	131, 235, 327, 730
ApeKI	GCWGC	6 cut(s)	149, 158, 263, 410, 586, 595
ApoI	RAATTY	1 cut(s)	493
AspS9I	GGNCC	2 cut(s)	59, 236
AsuC2I	CCSGG	1 cut(s)	163
AsuHPI	GGTGA	5 cut(s)	182, 562, 616, 658, 682
AvaII	GGWCC	1 cut(s)	59
AxyI	CCTNAGG	1 cut(s)	138
BaeGI	GKGCMC	1 cut(s)	285
BalI	TGGCCA	1 cut(s)	732
BanII	GRGCYC	1 cut(s)	343
Bbv12I	GWGCWC	1 cut(s)	343
BbvI	GCAGC	6 cut(s)	145, 161, 250, 422, 598, 607
BccI	CCATC	3 cut(s)	221, 595, 722
BceAI	ACGGC	3 cut(s)	138, 342, 431
BcgI	CGANNNNNNTGC	2 cut(s)	716, 750
BciT130I	CCWGG	1 cut(s)	626
BcnI	CCSGG	1 cut(s)	163
BcoDI	GTCTC	2 cut(s)	185, 203
BfaI	CTAG	4 cut(s)	129, 299, 308, 590
BisI	GCNGC	8 cut(s)	134, 150, 159, 210, 264, 411, 587, 596
BlsI	GCNGC	8 cut(s)	135, 151, 160, 211, 265, 412, 588, 597
Bme1390I	CCNGG	2 cut(s)	163, 626
Bme18I	GGWCC	1 cut(s)	59
BmgT120I	GGNCC	2 cut(s)	59, 236
BmiI	GGNNCC	1 cut(s)	759
BmrFI	CCNGG	2 cut(s)	163, 626
BmrI	ACTGGG	2 cut(s)	525, 750
BmsI	GCATC	2 cut(s)	433, 697
BmuI	ACTGGG	2 cut(s)	525, 750
BoxI	GACNNNNGTC	1 cut(s)	525
BpmI	CTGGAG	3 cut(s)	99, 291, 664
BpuEI	CTTGAG	1 cut(s)	647
BpuMI	CCSGG	1 cut(s)	163
Bsa29I	ATCGAT	1 cut(s)	726
BsaI	GGTCTC	1 cut(s)	185
BsaJI	CCNNGG	3 cut(s)	9, 473, 612
Bsc4I	CCNNNNNNNGG	5 cut(s)	176, 325, 405, 406, 474
Bse1I	ACTGG	5 cut(s)	82, 193, 531, 548, 745
Bse21I	CCTNAGG	1 cut(s)	138
BseBI	CCWGG	1 cut(s)	626
BseCI	ATCGAT	1 cut(s)	726
BseDI	CCNNGG	3 cut(s)	9, 473, 612
BseGI	GGATG	2 cut(s)	232, 685
BseLI	CCNNNNNNNGG	5 cut(s)	176, 325, 405, 406, 474
BseMII	CTCAG	5 cut(s)	84, 129, 254, 407, 609
BseNI	ACTGG	5 cut(s)	82, 193, 531, 548, 745
BseSI	GKGCMC	1 cut(s)	285
BseXI	GCAGC	6 cut(s)	145, 161, 250, 422, 598, 607
BsgI	GTGCAG	1 cut(s)	614
BshFI	GGCC	4 cut(s)	133, 237, 329, 732
BshVI	ATCGAT	1 cut(s)	726
BsiHKAI	GWGCWC	1 cut(s)	343
BsiSI	CCGG	1 cut(s)	162
BslFI	GGGAC	1 cut(s)	513
BslI	CCNNNNNNNGG	5 cut(s)	176, 325, 405, 406, 474
BsmAI	GTCTC	2 cut(s)	185, 203
BsmFI	GGGAC	1 cut(s)	513
BsnI	GGCC	4 cut(s)	133, 237, 329, 732
Bso31I	GGTCTC	1 cut(s)	185
Bsp1286I	GDGCHC	2 cut(s)	285, 343
Bsp143I	GATC	1 cut(s)	450
Bsp19I	CCATGG	1 cut(s)	9
BspACI	CCGC	5 cut(s)	14, 32, 134, 210, 261
BspANI	GGCC	4 cut(s)	133, 237, 329, 732
BspCNI	CTCAG	5 cut(s)	85, 130, 253, 408, 610
BspDI	ATCGAT	1 cut(s)	726
BspLI	GGNNCC	1 cut(s)	759
BspPI	GGATC	1 cut(s)	445
BspTNI	GGTCTC	1 cut(s)	185
BsrI	ACTGG	5 cut(s)	82, 193, 531, 548, 745
BssECI	CCNNGG	3 cut(s)	9, 473, 612
BssMI	GATC	1 cut(s)	450
BssT1I	CCWWGG	3 cut(s)	9, 473, 612
Bst2UI	CCWGG	1 cut(s)	626
Bst4CI	ACNGT	2 cut(s)	458, 670
BstAPI	GCANNNNNTGC	1 cut(s)	592
BstC8I	GCNNGC	1 cut(s)	30
BstDEI	CTNAG	6 cut(s)	93, 138, 240, 416, 536, 618
BstDSI	CCRYGG	1 cut(s)	9
BstEII	GGTNACC	1 cut(s)	165
BstF5I	GGATG	2 cut(s)	232, 685
BstKTI	GATC	1 cut(s)	453
BstMAI	GTCTC	2 cut(s)	185, 203
BstMBI	GATC	1 cut(s)	450
BstMWI	GCNNNNNNNGC	6 cut(s)	98, 155, 158, 592, 595, 707
BstNI	CCWGG	1 cut(s)	626
BstNSI	RCATGY	1 cut(s)	32
BstPAI	GACNNNNGTC	1 cut(s)	525
BstPI	GGTNACC	1 cut(s)	165
BstSCI	CCNGG	2 cut(s)	161, 624
BstSLI	GKGCMC	1 cut(s)	285
BstV1I	GCAGC	6 cut(s)	145, 161, 250, 422, 598, 607
BstXI	CCANNNNNNTGG	1 cut(s)	740
Bsu15I	ATCGAT	1 cut(s)	726
Bsu36I	CCTNAGG	1 cut(s)	138
BsuRI	GGCC	4 cut(s)	133, 237, 329, 732
BsuTUI	ATCGAT	1 cut(s)	726
BtgI	CCRYGG	1 cut(s)	9
BtsCI	GGATG	2 cut(s)	232, 685
BtsIMutI	CAGTG	3 cut(s)	200, 201, 454
Cac8I	GCNNGC	1 cut(s)	30
Cfr13I	GGNCC	2 cut(s)	59, 236
ClaI	ATCGAT	1 cut(s)	726
CviAII	CATG	4 cut(s)	10, 29, 320, 734
DdeI	CTNAG	6 cut(s)	93, 138, 240, 416, 536, 618
DpnI	GATC	1 cut(s)	452
DpnII	GATC	1 cut(s)	450
DraI	TTTAAA	1 cut(s)	72
EaeI	YGGCCR	2 cut(s)	327, 730
Ecl136II	GAGCTC	1 cut(s)	341
Eco130I	CCWWGG	3 cut(s)	9, 473, 612
Eco24I	GRGCYC	1 cut(s)	343
Eco31I	GGTCTC	1 cut(s)	185
Eco47I	GGWCC	1 cut(s)	59
Eco53kI	GAGCTC	1 cut(s)	341
Eco57I	CTGAAG	3 cut(s)	225, 423, 723
Eco81I	CCTNAGG	1 cut(s)	138
Eco91I	GGTNACC	1 cut(s)	165
EcoICRI	GAGCTC	1 cut(s)	341
EcoO109I	RGGNCCY	2 cut(s)	59, 236
EcoO65I	GGTNACC	1 cut(s)	165
EcoRII	CCWGG	1 cut(s)	624
EcoT14I	CCWWGG	3 cut(s)	9, 473, 612
EcoT22I	ATGCAT	1 cut(s)	30
EcoT38I	GRGCYC	1 cut(s)	343
ErhI	CCWWGG	3 cut(s)	9, 473, 612
FaeI	CATG	4 cut(s)	13, 32, 323, 737
FaqI	GGGAC	1 cut(s)	513
FatI	CATG	4 cut(s)	9, 28, 319, 733
FblI	GTMKAC	1 cut(s)	479
Fnu4HI	GCNGC	8 cut(s)	134, 150, 159, 210, 264, 411, 587, 596
FokI	GGATG	2 cut(s)	239, 672
FriOI	GRGCYC	1 cut(s)	343
Fsp4HI	GCNGC	8 cut(s)	134, 150, 159, 210, 264, 411, 587, 596
FspBI	CTAG	4 cut(s)	129, 299, 308, 590
GluI	GCNGC	8 cut(s)	134, 150, 159, 210, 264, 411, 587, 596
GsuI	CTGGAG	3 cut(s)	99, 291, 664
HaeIII	GGCC	4 cut(s)	133, 237, 329, 732
HapII	CCGG	1 cut(s)	162
Hin1II	CATG	4 cut(s)	13, 32, 323, 737
HindIII	AAGCTT	1 cut(s)	20
HinfI	GANTC	4 cut(s)	216, 499, 607, 677
HpaII	CCGG	1 cut(s)	162
HphI	GGTGA	5 cut(s)	182, 562, 616, 658, 682
Hpy166II	GTNNAC	2 cut(s)	480, 562
Hpy188I	TCNGA	3 cut(s)	243, 417, 435
Hpy188III	TCNNGA	4 cut(s)	270, 386, 664, 681
Hpy8I	GTNNAC	2 cut(s)	480, 562
HpyAV	CCTTC	6 cut(s)	72, 398, 505, 583, 643, 647
HpyCH4III	ACNGT	2 cut(s)	458, 670
HpyCH4V	TGCA	6 cut(s)	28, 86, 101, 290, 461, 595
HpyF10VI	GCNNNNNNNGC	6 cut(s)	98, 155, 158, 592, 595, 707
HpyF3I	CTNAG	6 cut(s)	93, 138, 240, 416, 536, 618
Hsp92II	CATG	4 cut(s)	13, 32, 323, 737
Kzo9I	GATC	1 cut(s)	450
LmnI	GCTCC	2 cut(s)	338, 757
Lsp1109I	GCAGC	6 cut(s)	145, 161, 250, 422, 598, 607
LweI	GCATC	2 cut(s)	433, 697
MaeI	CTAG	4 cut(s)	129, 299, 308, 590
MaeIII	GTNAC	4 cut(s)	165, 322, 344, 539
MalI	GATC	1 cut(s)	452
MboI	GATC	1 cut(s)	450
MboII	GAAGA	2 cut(s)	256, 716
MhlI	GDGCHC	2 cut(s)	285, 343
MlsI	TGGCCA	1 cut(s)	732
MluCI	AATT	1 cut(s)	493
MluNI	TGGCCA	1 cut(s)	732
MlyI	GAGTC	3 cut(s)	225, 508, 671
MmeI	TCCRAC	2 cut(s)	319, 413
MnlI	CCTC	7 cut(s)	50, 74, 133, 249, 266, 277, 373
Mox20I	TGGCCA	1 cut(s)	732
Mph1103I	ATGCAT	1 cut(s)	30
MscI	TGGCCA	1 cut(s)	732
MseI	TTAA	5 cut(s)	71, 486, 639, 717, 763
Msp20I	TGGCCA	1 cut(s)	732
MspA1I	CMGCKG	2 cut(s)	263, 598
MspI	CCGG	1 cut(s)	162
MspR9I	CCNGG	2 cut(s)	163, 626
MvaI	CCWGG	1 cut(s)	626
MwoI	GCNNNNNNNGC	6 cut(s)	98, 155, 158, 592, 595, 707
NciI	CCSGG	1 cut(s)	163
NcoI	CCATGG	1 cut(s)	9
NdeII	GATC	1 cut(s)	450
NlaIII	CATG	4 cut(s)	13, 32, 323, 737
NlaIV	GGNNCC	1 cut(s)	759
NmuCI	GTSAC	1 cut(s)	322
NsiI	ATGCAT	1 cut(s)	30
NspI	RCATGY	1 cut(s)	32
PaeI	GCATGC	1 cut(s)	32
PfeI	GAWTC	1 cut(s)	607
PflMI	CCANNNNNTGG	1 cut(s)	474
PkrI	GCNGC	8 cut(s)	135, 151, 160, 211, 265, 412, 588, 597
PleI	GAGTC	3 cut(s)	224, 507, 671
PpsI	GAGTC	3 cut(s)	224, 507, 671
PpuMI	RGGWCCY	1 cut(s)	59
PshAI	GACNNNNGTC	1 cut(s)	525
Psp124BI	GAGCTC	1 cut(s)	343
Psp5II	RGGWCCY	1 cut(s)	59
Psp6I	CCWGG	1 cut(s)	624
PspEI	GGTNACC	1 cut(s)	165
PspGI	CCWGG	1 cut(s)	624
PspN4I	GGNNCC	1 cut(s)	759
PspPI	GGNCC	2 cut(s)	59, 236
PspPPI	RGGWCCY	1 cut(s)	59
PvuII	CAGCTG	1 cut(s)	598
SacI	GAGCTC	1 cut(s)	343
SaqAI	TTAA	5 cut(s)	71, 486, 639, 717, 763
SatI	GCNGC	8 cut(s)	134, 150, 159, 210, 264, 411, 587, 596
Sau3AI	GATC	1 cut(s)	450
Sau96I	GGNCC	2 cut(s)	59, 236
SchI	GAGTC	3 cut(s)	225, 508, 671
ScrFI	CCNGG	2 cut(s)	163, 626
SduI	GDGCHC	2 cut(s)	285, 343
SfaNI	GCATC	2 cut(s)	433, 697
SinI	GGWCC	1 cut(s)	59
SmlI	CTYRAG	1 cut(s)	662
SmoI	CTYRAG	1 cut(s)	662
SphI	GCATGC	1 cut(s)	32
Sse9I	AATT	1 cut(s)	493
SsiI	CCGC	5 cut(s)	14, 32, 134, 210, 261
SspMI	CTAG	4 cut(s)	129, 299, 308, 590
SstI	GAGCTC	1 cut(s)	343
StyD4I	CCNGG	2 cut(s)	161, 624
StyI	CCWWGG	3 cut(s)	9, 473, 612
TaaI	ACNGT	2 cut(s)	458, 670
TaqI	TCGA	1 cut(s)	726
TasI	AATT	1 cut(s)	493
TauI	GCSGC	2 cut(s)	136, 212
TfiI	GAWTC	1 cut(s)	607
Tru1I	TTAA	5 cut(s)	71, 486, 639, 717, 763
Tru9I	TTAA	5 cut(s)	71, 486, 639, 717, 763
TscAI	CASTG	3 cut(s)	200, 208, 461
TseFI	GTSAC	1 cut(s)	322
TseI	GCWGC	6 cut(s)	149, 158, 263, 410, 586, 595
Tsp45I	GTSAC	1 cut(s)	322
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	3 cut(s)	200, 208, 461
Van91I	CCANNNNNTGG	1 cut(s)	474
VpaK11BI	GGWCC	1 cut(s)	59
XapI	RAATTY	1 cut(s)	493
XceI	RCATGY	1 cut(s)	32
XmiI	GTMKAC	1 cut(s)	479
XspI	CTAG	4 cut(s)	129, 299, 308, 590
Zsp2I	ATGCAT	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.