Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005719.1

Orthogroup ID

OG0000313

Physical Location & Seq

Genomic Coordinates Forward (+)

89080 .. 90387

Gene Structure 1308 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005719.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

atgttccaagttccaatcccatctccaaagaaaaatgaggttttgctcaagttggaagcagcaagtctaaatccaggtgattgtaagattcagaaaggcatggcgtggcctcttttccctcgcaagttgccacacattcctgtaactgatgtggctggagaggctgtagaggtgggactgggagtcacaaagttcaaagtgggtgacaaagttgtggcaatgctcagctatggtaatggaggtggacttggtgagtttgcggcagctaatgagaaattggtagtttctaggcctcctgaagtgtcagtagcagacggcgcaggcttaccggttgctgctcttatagctcaccaggctctcaccaaagatgcaaggatcaagcttgatggaacaagccagcagaagaacatactcattaccggtgcctcaggggcagatgaggttcttgactacaagacccctgaaggggcagctgtcaagagcccatctggtcggaaatatgattttgtgatccattcttcatcaaaagcaattccttggtcagtctttgagctgactttgagctcaaatgggaaagttatagaccttactgccggccccagctccttgtttacttttgttcttaagaaactcaccttctccaagaagaagctgatgccattgatcataaatgcgaagggtgagaacctggattgtcttgttaagttggtgaaggaaggaaagctcaagactgtgattgactcaaattttcctctaaacaaagctgaagatgcttgggctaaaagacttgatggctacaatacagggaagatcattgtggagcattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N_2

Protein Analysis

275

Amino Acids

29.36

Weight (kDa)

9.29

Isoelectric Point (pI)

22.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13010
fragaria_vesca	FvH4_2g18240 FvH4_2g18280 FvH4_2g18310 FvH4_2g18320 FvH4_2g18330 FvH4_2g18340 FvH4_2g18350
malus_domestica	MD05G1166800.v1.1 MD05G1167200.v1.1 MD05G1167300.v1.1 MD05G1167400.v1.1 MD05G1167600.v1.1 MD05G1168000.v1.1 MD05G1168200.v1.1 MD05G1168400.v1.1 MD05G1168600.v1.1 MD05G1168700.v1.1 MD05G1168800.v1.1 MD10G1156900.v1.1 MD10G1157000.v1.1 MD10G1157100.v1.1 MD10G1157200.v1.1
prunus_persica	Prupe.8G195100_v2.0.a1 Prupe.8G195100_v2.0.a1 Prupe.8G195300_v2.0.a1 Prupe.8G195600_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G196000_v2.0.a1 Prupe.8G196000_v2.0.a1
pyrus_communis	pycom05g15560 pycom05g15600 pycom05g15610 pycom05g15620 pycom05g15630 pycom10g13550 pycom10g13570
rosa_chinensis	RchiOBHm_Chr6g0283611 RchiOBHm_Chr6g0283631 RchiOBHm_Chr6g0283641 RchiOBHm_Chr6g0283661 RchiOBHm_Chr6g0283681 RchiOBHm_Chr6g0283691 RchiOBHm_Chr6g0283701 RchiOBHm_Chr6g0283711 RchiOBHm_Chr6g0283721
rosa_laevigata	RLG00000012804 RLG00000012807 RLG00000012811
rosa_multiflora	Rmu_co8263921.1_g000001 Rmu_sc0001521.1_g000009 Rmu_sc0002906.1_g000002 Rmu_sc0002906.1_g000011 Rmu_sc0002906.1_g000013 Rmu_sc0005719.1_g000016 Rmu_sc0005719.1_g000022 Rmu_sc0029460.1_g000001
rosa_roxburghii	Rroxscaffold_7G00185240 Rroxscaffold_7G00185250 Rroxscaffold_7G00185270 Rroxscaffold_7G00185280 Rroxscaffold_7G00185290 Rroxscaffold_7G00185330 Rroxscaffold_7G00185350
rosa_rugosa	Rorug06G0156100 Rorug06G0156300 Rorug06G0156400 Rorug06G0156500 Rorug06G0156600 Rorug06G0156700 Rorug06G0156800 Rorug06G0156900 Rorug06G0157000
rosa_samantha	Rh6AG267900 Rh6AG268100 Rh6AG268200 Rh6AG268400 Rh6AG268600 Rh6AG268700 Rh6AG268900 Rh6AG269100 Rh6BG270700 Rh6BG270900 Rh6BG271000 Rh6BG271200 Rh6BG271400 Rh6BG271500 Rh6CG270200 Rh6CG270400 Rh6CG270500 Rh6CG270800 Rh6CG270900 Rh6CG271000 Rh6CG271100 Rh6CG271300 Rh6DG263900 Rh6DG264100 Rh6DG264200 Rh6DG264400 Rh6DG264600 Rh6DG264800 Rh6DG265200
rosa_wichuraiana	Rw6G023210 Rw6G023220 Rw6G023230 Rw6G023240 Rw6G023250 Rw6G023260 Rw6G023270 Rw6G023280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	422
AciI	CCGC	1 cut(s)	260
AclWI	GGATC	2 cut(s)	383, 505
AcsI	RAATTY	1 cut(s)	745
AcuI	CTGAAG	3 cut(s)	318, 483, 786
AfiI	CCNNNNNNNGG	2 cut(s)	465, 466
AflII	CTTAAG	1 cut(s)	623
AgeI	ACCGGT	2 cut(s)	328, 419
AgsI	TTSAA	1 cut(s)	196
AhdI	GACNNNNNGTC	1 cut(s)	182
AjnI	CCWGG	3 cut(s)	73, 351, 687
Alw21I	GWGCWC	1 cut(s)	566
AlwI	GGATC	2 cut(s)	383, 505
AoxI	GGCC	3 cut(s)	107, 290, 595
ApeKI	GCWGC	4 cut(s)	59, 263, 335, 470
ApoI	RAATTY	1 cut(s)	745
AsiGI	ACCGGT	2 cut(s)	328, 419
AspLEI	GCGC	1 cut(s)	320
AspS9I	GGNCC	1 cut(s)	596
AsuHPI	GGTGA	8 cut(s)	89, 215, 263, 341, 352, 625, 692, 721
AxyI	CCTNAGG	1 cut(s)	427
BanI	GGYRCC	1 cut(s)	422
BanII	GRGCYC	2 cut(s)	485, 566
Bbv12I	GWGCWC	1 cut(s)	566
BbvI	GCAGC	4 cut(s)	71, 275, 322, 482
BccI	CCATC	4 cut(s)	28, 380, 493, 785
BceAI	ACGGC	1 cut(s)	331
BciT130I	CCWGG	3 cut(s)	75, 353, 689
BclI	TGATCA	1 cut(s)	663
BfaI	CTAG	1 cut(s)	288
BfmI	CTRYAG	1 cut(s)	165
BfrI	CTTAAG	1 cut(s)	623
BglI	GCCNNNNNGGC	1 cut(s)	431
BisI	GCNGC	5 cut(s)	60, 261, 264, 336, 471
BlpI	GCTNAGC	1 cut(s)	224
BlsI	GCNGC	5 cut(s)	61, 262, 265, 337, 472
Bme1390I	CCNGG	3 cut(s)	75, 353, 689
BmeRI	GACNNNNNGTC	1 cut(s)	182
BmgT120I	GGNCC	1 cut(s)	596
BmiI	GGNNCC	2 cut(s)	424, 598
BmrFI	CCNGG	3 cut(s)	75, 353, 689
BmrI	ACTGGG	1 cut(s)	188
BmsI	GCATC	3 cut(s)	358, 645, 760
BmuI	ACTGGG	1 cut(s)	188
BpmI	CTGGAG	1 cut(s)	177
Bpu1102I	GCTNAGC	1 cut(s)	224
BpuEI	CTTGAG	2 cut(s)	32, 710
BsaJI	CCNNGG	1 cut(s)	536
BsaWI	WCCGGW	2 cut(s)	328, 419
BsaXI	ACNNNNNCTCC	2 cut(s)	150, 180
Bsc4I	CCNNNNNNNGG	2 cut(s)	465, 466
Bse118I	RCCGGY	3 cut(s)	328, 419, 593
Bse1I	ACTGG	1 cut(s)	183
Bse21I	CCTNAGG	1 cut(s)	427
Bse3DI	GCAATG	1 cut(s)	225
BseBI	CCWGG	3 cut(s)	75, 353, 689
BseDI	CCNNGG	1 cut(s)	536
BseLI	CCNNNNNNNGG	2 cut(s)	465, 466
BseMI	GCAATG	1 cut(s)	225
BseMII	CTCAG	2 cut(s)	238, 441
BseNI	ACTGG	1 cut(s)	183
BseXI	GCAGC	4 cut(s)	71, 275, 322, 482
BseYI	CCCAGC	1 cut(s)	599
BshFI	GGCC	3 cut(s)	109, 292, 597
BshNI	GGYRCC	1 cut(s)	422
BshTI	ACCGGT	2 cut(s)	328, 419
BsiHKAI	GWGCWC	1 cut(s)	566
BsiSI	CCGG	3 cut(s)	329, 420, 594
BslFI	GGGAC	1 cut(s)	189
BslI	CCNNNNNNNGG	2 cut(s)	465, 466
BsmFI	GGGAC	1 cut(s)	189
BsnI	GGCC	3 cut(s)	109, 292, 597
Bsp1286I	GDGCHC	2 cut(s)	485, 566
Bsp143I	GATC	4 cut(s)	375, 510, 663, 810
Bsp1720I	GCTNAGC	1 cut(s)	224
BspACI	CCGC	1 cut(s)	260
BspANI	GGCC	3 cut(s)	109, 292, 597
BspCNI	CTCAG	2 cut(s)	237, 440
BspLI	GGNNCC	2 cut(s)	424, 598
BspPI	GGATC	2 cut(s)	383, 505
BspT107I	GGYRCC	1 cut(s)	422
BspTI	CTTAAG	1 cut(s)	623
BsrDI	GCAATG	1 cut(s)	225
BsrFI	RCCGGY	3 cut(s)	328, 419, 593
BsrI	ACTGG	1 cut(s)	183
BssAI	RCCGGY	3 cut(s)	328, 419, 593
BssECI	CCNNGG	1 cut(s)	536
BssMI	GATC	4 cut(s)	375, 510, 663, 810
BssT1I	CCWWGG	1 cut(s)	536
Bst2UI	CCWGG	3 cut(s)	75, 353, 689
Bst4CI	ACNGT	1 cut(s)	733
BstAFI	CTTAAG	1 cut(s)	623
BstC8I	GCNNGC	3 cut(s)	322, 398, 595
BstDEI	CTNAG	2 cut(s)	224, 427
BstHHI	GCGC	1 cut(s)	320
BstKTI	GATC	4 cut(s)	378, 513, 666, 813
BstMBI	GATC	4 cut(s)	375, 510, 663, 810
BstMWI	GCNNNNNNNGC	6 cut(s)	161, 317, 344, 353, 431, 770
BstNI	CCWGG	3 cut(s)	75, 353, 689
BstSCI	CCNGG	3 cut(s)	73, 351, 687
BstSFI	CTRYAG	1 cut(s)	165
BstV1I	GCAGC	4 cut(s)	71, 275, 322, 482
Bsu36I	CCTNAGG	1 cut(s)	427
BsuRI	GGCC	3 cut(s)	109, 292, 597
Cac8I	GCNNGC	3 cut(s)	322, 398, 595
CfoI	GCGC	1 cut(s)	320
Cfr10I	RCCGGY	3 cut(s)	328, 419, 593
Cfr13I	GGNCC	1 cut(s)	596
CspAI	ACCGGT	2 cut(s)	328, 419
CviAII	CATG	1 cut(s)	100
DdeI	CTNAG	2 cut(s)	224, 427
DpnI	GATC	4 cut(s)	377, 512, 665, 812
DpnII	GATC	4 cut(s)	375, 510, 663, 810
DriI	GACNNNNNGTC	1 cut(s)	182
Eam1105I	GACNNNNNGTC	1 cut(s)	182
Ecl136II	GAGCTC	1 cut(s)	564
Eco130I	CCWWGG	1 cut(s)	536
Eco147I	AGGCCT	1 cut(s)	292
Eco24I	GRGCYC	2 cut(s)	485, 566
Eco53kI	GAGCTC	1 cut(s)	564
Eco57I	CTGAAG	3 cut(s)	318, 483, 786
Eco81I	CCTNAGG	1 cut(s)	427
EcoICRI	GAGCTC	1 cut(s)	564
EcoRII	CCWGG	3 cut(s)	73, 351, 687
EcoT14I	CCWWGG	1 cut(s)	536
EcoT38I	GRGCYC	2 cut(s)	485, 566
ErhI	CCWWGG	1 cut(s)	536
FaeI	CATG	1 cut(s)	103
FaiI	YATR	7 cut(s)	101, 231, 344, 410, 501, 581, 668
FaqI	GGGAC	1 cut(s)	189
FatI	CATG	1 cut(s)	99
FbaI	TGATCA	1 cut(s)	663
Fnu4HI	GCNGC	5 cut(s)	60, 261, 264, 336, 471
FriOI	GRGCYC	2 cut(s)	485, 566
Fsp4HI	GCNGC	5 cut(s)	60, 261, 264, 336, 471
FspBI	CTAG	1 cut(s)	288
GlaI	GCGC	1 cut(s)	319
GluI	GCNGC	5 cut(s)	60, 261, 264, 336, 471
GsaI	CCCAGC	1 cut(s)	603
GsuI	CTGGAG	1 cut(s)	177
HaeIII	GGCC	3 cut(s)	109, 292, 597
HapII	CCGG	3 cut(s)	329, 420, 594
HhaI	GCGC	1 cut(s)	320
Hin1II	CATG	1 cut(s)	103
Hin6I	GCGC	1 cut(s)	318
HinP1I	GCGC	1 cut(s)	318
HindIII	AAGCTT	1 cut(s)	380
HinfI	GANTC	3 cut(s)	88, 183, 740
HpaII	CCGG	3 cut(s)	329, 420, 594
HphI	GGTGA	8 cut(s)	89, 215, 263, 341, 352, 625, 692, 721
Hpy166II	GTNNAC	2 cut(s)	245, 612
Hpy188I	TCNGA	2 cut(s)	93, 495
Hpy188III	TCNNGA	4 cut(s)	296, 446, 478, 727
Hpy8I	GTNNAC	2 cut(s)	245, 612
HpyAV	CCTTC	5 cut(s)	458, 646, 670, 706, 710
HpyCH4III	ACNGT	1 cut(s)	733
HpyCH4V	TGCA	1 cut(s)	371
HpyF10VI	GCNNNNNNNGC	6 cut(s)	161, 317, 344, 353, 431, 770
HpyF3I	CTNAG	2 cut(s)	224, 427
Hsp92II	CATG	1 cut(s)	103
HspAI	GCGC	1 cut(s)	318
KroI	GCCGGC	1 cut(s)	593
KroNI	GCCGGC	1 cut(s)	595
Ksp22I	TGATCA	1 cut(s)	663
Kzo9I	GATC	4 cut(s)	375, 510, 663, 810
LmnI	GCTCC	2 cut(s)	608, 820
Lsp1109I	GCAGC	4 cut(s)	71, 275, 322, 482
LweI	GCATC	3 cut(s)	358, 645, 760
MaeI	CTAG	1 cut(s)	288
MaeIII	GTNAC	3 cut(s)	142, 184, 203
MalI	GATC	4 cut(s)	377, 512, 665, 812
MboI	GATC	4 cut(s)	375, 510, 663, 810
MboII	GAAGA	5 cut(s)	415, 510, 658, 779, 820
MhlI	GDGCHC	2 cut(s)	485, 566
MluCI	AATT	3 cut(s)	275, 531, 745
MlyI	GAGTC	2 cut(s)	192, 734
MmeI	TCCRAC	2 cut(s)	33, 473
MroNI	GCCGGC	1 cut(s)	593
MseI	TTAA	2 cut(s)	624, 702
MspA1I	CMGCKG	1 cut(s)	473
MspCI	CTTAAG	1 cut(s)	623
MspI	CCGG	3 cut(s)	329, 420, 594
MspR9I	CCNGG	3 cut(s)	75, 353, 689
MvaI	CCWGG	3 cut(s)	75, 353, 689
MwoI	GCNNNNNNNGC	6 cut(s)	161, 317, 344, 353, 431, 770
NaeI	GCCGGC	1 cut(s)	595
NdeII	GATC	4 cut(s)	375, 510, 663, 810
NgoMIV	GCCGGC	1 cut(s)	593
NlaIII	CATG	1 cut(s)	103
NlaIV	GGNNCC	2 cut(s)	424, 598
NmuCI	GTSAC	2 cut(s)	184, 203
PceI	AGGCCT	1 cut(s)	292
PdiI	GCCGGC	1 cut(s)	595
PfeI	GAWTC	1 cut(s)	88
PinAI	ACCGGT	2 cut(s)	328, 419
PkrI	GCNGC	5 cut(s)	61, 262, 265, 337, 472
PleI	GAGTC	2 cut(s)	191, 734
PpsI	GAGTC	2 cut(s)	191, 734
Psp124BI	GAGCTC	1 cut(s)	566
Psp6I	CCWGG	3 cut(s)	73, 351, 687
PspFI	CCCAGC	1 cut(s)	599
PspGI	CCWGG	3 cut(s)	73, 351, 687
PspN4I	GGNNCC	2 cut(s)	424, 598
PspPI	GGNCC	1 cut(s)	596
PvuII	CAGCTG	1 cut(s)	473
SacI	GAGCTC	1 cut(s)	566
SaqAI	TTAA	2 cut(s)	624, 702
SatI	GCNGC	5 cut(s)	60, 261, 264, 336, 471
Sau3AI	GATC	4 cut(s)	375, 510, 663, 810
Sau96I	GGNCC	1 cut(s)	596
SchI	GAGTC	2 cut(s)	192, 734
ScrFI	CCNGG	3 cut(s)	75, 353, 689
SduI	GDGCHC	2 cut(s)	485, 566
SfaNI	GCATC	3 cut(s)	358, 645, 760
SfcI	CTRYAG	1 cut(s)	165
SmlI	CTYRAG	3 cut(s)	47, 623, 725
SmoI	CTYRAG	3 cut(s)	47, 623, 725
Sse9I	AATT	3 cut(s)	275, 531, 745
SseBI	AGGCCT	1 cut(s)	292
SsiI	CCGC	1 cut(s)	260
SspMI	CTAG	1 cut(s)	288
SstI	GAGCTC	1 cut(s)	566
StuI	AGGCCT	1 cut(s)	292
StyD4I	CCNGG	3 cut(s)	73, 351, 687
StyI	CCWWGG	1 cut(s)	536
TaaI	ACNGT	1 cut(s)	733
TasI	AATT	3 cut(s)	275, 531, 745
TauI	GCSGC	1 cut(s)	263
TfiI	GAWTC	1 cut(s)	88
Tru1I	TTAA	2 cut(s)	624, 702
Tru9I	TTAA	2 cut(s)	624, 702
TseFI	GTSAC	2 cut(s)	184, 203
TseI	GCWGC	4 cut(s)	59, 263, 335, 470
Tsp45I	GTSAC	2 cut(s)	184, 203
TspDTI	ATGAA	1 cut(s)	510
Vha464I	CTTAAG	1 cut(s)	623
XapI	RAATTY	1 cut(s)	745
XspI	CTAG	1 cut(s)	288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.