Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0000313

Physical Location & Seq

Genomic Coordinates Forward (+)

44570944 .. 44572742

Gene Structure 1799 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG271100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGCGGTAAAGCTTATGCATGCGGTTCAGTACAACAGTTATGGTGGAGGACCGTCTGGTTTAAAGAATGGAGGTGGATTTGCTGAATTTGCAACTGCTAGTGAGAGTTTGACTGTTACTAGGCCGCCGGAAGTTTCAGCAGCTGAAGCTGCAGGGTTACCTATTGCAGGTATCACAGCTCACAAGTGTCTCACTCAAGCTGCAGGAGTCAAGCTGGACGGCACCGGCCTGCAGAAAAACATATTGGTTACTGCTGCCTCTGGAGGTGTAGGGCACTATGCAGTCCAACTAGCAAAGCTCGGGAACCATCATGTCACAGCCACTTGTGGAGCGCGTAACATTGATTTGGTCAAGAGCTTAGGGGCTGACGAGGTTCTTGACTACAAGACCCCTGAAGGGGCAGCTCTGAATAGCCCTTCTGGTCGGAAATATGATGCTGTGATCCACTGTACAACGGGCATTCCTTGGTCCACTTTTAATCCGAATTTGAGTCCAAATGGGAAGGTCATAGACATTACTCCCGGTCCAAGGGCTATGCTTACTTTCACTCTACAGAAACTCACCTGCTCCAAGAAGCAGCTGGTGCCGCTGCTGGTGATTCGCAAGGCTGAGAACCTGGAATATCTTGTTCAGTTGGTGAAGGAAGGAAAGCTCAAGACGGTGATCGACTCAACGCATCCTCTGAGCAAGGCTGAAGATGCTTGGGGTAAGAGCATCGACGGCCATGCTACTGGGAAGATCATTGTGGAGCCTAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N_2

Protein Analysis

252

Amino Acids

26.34

Weight (kDa)

9.07

Isoelectric Point (pI)

30.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_zinc_N	PF00107	89 - 213	3.6e-11	Zinc-binding dehydrogenase
ADH_zinc_N_2	PF13602	120 - 249	2.8e-21	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13010
fragaria_vesca	FvH4_2g18240 FvH4_2g18280 FvH4_2g18310 FvH4_2g18320 FvH4_2g18330 FvH4_2g18340 FvH4_2g18350
malus_domestica	MD05G1166800.v1.1 MD05G1167200.v1.1 MD05G1167300.v1.1 MD05G1167400.v1.1 MD05G1167600.v1.1 MD05G1168000.v1.1 MD05G1168200.v1.1 MD05G1168400.v1.1 MD05G1168600.v1.1 MD05G1168700.v1.1 MD05G1168800.v1.1 MD10G1156900.v1.1 MD10G1157000.v1.1 MD10G1157100.v1.1 MD10G1157200.v1.1
prunus_persica	Prupe.8G195100_v2.0.a1 Prupe.8G195100_v2.0.a1 Prupe.8G195300_v2.0.a1 Prupe.8G195600_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G196000_v2.0.a1 Prupe.8G196000_v2.0.a1
pyrus_communis	pycom05g15560 pycom05g15600 pycom05g15610 pycom05g15620 pycom05g15630 pycom10g13550 pycom10g13570
rosa_chinensis	RchiOBHm_Chr6g0283611 RchiOBHm_Chr6g0283631 RchiOBHm_Chr6g0283641 RchiOBHm_Chr6g0283661 RchiOBHm_Chr6g0283681 RchiOBHm_Chr6g0283691 RchiOBHm_Chr6g0283701 RchiOBHm_Chr6g0283711 RchiOBHm_Chr6g0283721
rosa_laevigata	RLG00000012804 RLG00000012807 RLG00000012811
rosa_multiflora	Rmu_co8263921.1_g000001 Rmu_sc0001521.1_g000009 Rmu_sc0002906.1_g000002 Rmu_sc0002906.1_g000011 Rmu_sc0002906.1_g000013 Rmu_sc0005719.1_g000016 Rmu_sc0005719.1_g000022 Rmu_sc0029460.1_g000001
rosa_roxburghii	Rroxscaffold_7G00185240 Rroxscaffold_7G00185250 Rroxscaffold_7G00185270 Rroxscaffold_7G00185280 Rroxscaffold_7G00185290 Rroxscaffold_7G00185330 Rroxscaffold_7G00185350
rosa_rugosa	Rorug06G0156100 Rorug06G0156300 Rorug06G0156400 Rorug06G0156500 Rorug06G0156600 Rorug06G0156700 Rorug06G0156800 Rorug06G0156900 Rorug06G0157000
rosa_samantha	Rh6AG267900 Rh6AG268100 Rh6AG268200 Rh6AG268400 Rh6AG268600 Rh6AG268700 Rh6AG268900 Rh6AG269100 Rh6BG270700 Rh6BG270900 Rh6BG271000 Rh6BG271200 Rh6BG271400 Rh6BG271500 Rh6CG270200 Rh6CG270400 Rh6CG270500 Rh6CG270800 Rh6CG270900 Rh6CG271000 Rh6CG271100 Rh6CG271300 Rh6DG263900 Rh6DG264100 Rh6DG264200 Rh6DG264400 Rh6DG264600 Rh6DG264800 Rh6DG265200
rosa_wichuraiana	Rw6G023210 Rw6G023220 Rw6G023230 Rw6G023240 Rw6G023250 Rw6G023260 Rw6G023270 Rw6G023280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	572
Acc36I	ACCTGC	2 cut(s)	158, 572
AccB1I	GGYRCC	2 cut(s)	221, 583
AccII	CGCG	1 cut(s)	334
AciI	CCGC	4 cut(s)	5, 23, 125, 587
AclWI	GGATC	1 cut(s)	436
AcoI	YGGCCR	1 cut(s)	721
AcsI	RAATTY	2 cut(s)	86, 484
AcuI	CTGAAG	3 cut(s)	165, 414, 714
AfaI	GTAC	2 cut(s)	32, 451
AfiI	CCNNNNNNNGG	4 cut(s)	167, 396, 397, 528
AjnI	CCWGG	1 cut(s)	615
AjuI	GAANNNNNNNTTGG	2 cut(s)	227, 259
Alw26I	GTCTC	1 cut(s)	194
AlwI	GGATC	1 cut(s)	436
AlwNI	CAGNNNCTG	1 cut(s)	143
Ama87I	CYCGRG	1 cut(s)	299
AoxI	GGCC	3 cut(s)	122, 226, 721
ApeKI	GCWGC	7 cut(s)	140, 149, 200, 254, 401, 577, 589
ApoI	RAATTY	2 cut(s)	86, 484
AspLEI	GCGC	1 cut(s)	334
AspS9I	GGNCC	3 cut(s)	50, 468, 524
AsuC2I	CCSGG	1 cut(s)	522
AsuHPI	GGTGA	4 cut(s)	553, 607, 649, 673
AvaI	CYCGRG	1 cut(s)	299
AvaII	GGWCC	3 cut(s)	50, 468, 524
BaeGI	GKGCMC	1 cut(s)	276
BanI	GGYRCC	2 cut(s)	221, 583
BbvI	GCAGC	7 cut(s)	136, 152, 187, 241, 413, 576, 589
BccI	CCATC	1 cut(s)	315
BceAI	ACGGC	2 cut(s)	235, 736
BcgI	CGANNNNNNTGC	2 cut(s)	707, 741
BciT130I	CCWGG	1 cut(s)	617
BcnI	CCSGG	1 cut(s)	522
BcoDI	GTCTC	1 cut(s)	194
BfaI	CTAG	3 cut(s)	99, 120, 290
BfmI	CTRYAG	4 cut(s)	150, 201, 230, 551
BfuAI	ACCTGC	2 cut(s)	158, 572
BisI	GCNGC	9 cut(s)	125, 141, 150, 201, 255, 402, 578, 587, 590
BlsI	GCNGC	9 cut(s)	126, 142, 151, 202, 256, 403, 579, 588, 591
Bme1390I	CCNGG	2 cut(s)	522, 617
Bme18I	GGWCC	3 cut(s)	50, 468, 524
BmeT110I	CYCGRG	1 cut(s)	299
BmgT120I	GGNCC	3 cut(s)	50, 468, 524
BmiI	GGNNCC	4 cut(s)	223, 305, 585, 750
BmrFI	CCNGG	2 cut(s)	522, 617
BmrI	ACTGGG	1 cut(s)	741
BmsI	GCATC	4 cut(s)	424, 685, 688, 723
BmuI	ACTGGG	1 cut(s)	741
BpmI	CTGGAG	1 cut(s)	282
Bpu10I	CCTNAGC	1 cut(s)	358
BpuEI	CTTGAG	2 cut(s)	180, 638
BpuMI	CCSGG	1 cut(s)	522
BsaJI	CCNNGG	2 cut(s)	464, 527
Bsc4I	CCNNNNNNNGG	4 cut(s)	167, 396, 397, 528
Bse118I	RCCGGY	1 cut(s)	224
Bse1I	ACTGG	1 cut(s)	736
BseBI	CCWGG	1 cut(s)	617
BseDI	CCNNGG	2 cut(s)	464, 527
BseGI	GGATG	1 cut(s)	676
BseLI	CCNNNNNNNGG	4 cut(s)	167, 396, 397, 528
BseMII	CTCAG	2 cut(s)	600, 674
BseNI	ACTGG	1 cut(s)	736
BseSI	GKGCMC	1 cut(s)	276
BseXI	GCAGC	7 cut(s)	136, 152, 187, 241, 413, 576, 589
Bsh1236I	CGCG	1 cut(s)	334
BshFI	GGCC	3 cut(s)	124, 228, 723
BshNI	GGYRCC	2 cut(s)	221, 583
BsiHKCI	CYCGRG	1 cut(s)	299
BsiSI	CCGG	3 cut(s)	128, 225, 522
BslI	CCNNNNNNNGG	4 cut(s)	167, 396, 397, 528
BsmAI	GTCTC	1 cut(s)	194
BsmI	GAATGC	1 cut(s)	459
BsnI	GGCC	3 cut(s)	124, 228, 723
BsoBI	CYCGRG	1 cut(s)	299
Bsp1286I	GDGCHC	1 cut(s)	276
Bsp1407I	TGTACA	1 cut(s)	449
Bsp143I	GATC	3 cut(s)	441, 663, 738
BspACI	CCGC	4 cut(s)	5, 23, 125, 587
BspANI	GGCC	3 cut(s)	124, 228, 723
BspCNI	CTCAG	2 cut(s)	601, 675
BspFNI	CGCG	1 cut(s)	334
BspLI	GGNNCC	4 cut(s)	223, 305, 585, 750
BspMAI	CTGCAG	3 cut(s)	154, 205, 234
BspMI	ACCTGC	2 cut(s)	158, 572
BspPI	GGATC	1 cut(s)	436
BspT107I	GGYRCC	2 cut(s)	221, 583
BsrFI	RCCGGY	1 cut(s)	224
BsrGI	TGTACA	1 cut(s)	449
BsrI	ACTGG	1 cut(s)	736
BssAI	RCCGGY	1 cut(s)	224
BssECI	CCNNGG	2 cut(s)	464, 527
BssMI	GATC	3 cut(s)	441, 663, 738
BssT1I	CCWWGG	2 cut(s)	464, 527
Bst2UI	CCWGG	1 cut(s)	617
Bst4CI	ACNGT	5 cut(s)	38, 54, 115, 449, 661
BstAPI	GCANNNNNTGC	1 cut(s)	583
BstAUI	TGTACA	1 cut(s)	449
BstC8I	GCNNGC	2 cut(s)	21, 230
BstDEI	CTNAG	3 cut(s)	358, 609, 683
BstEII	GGTNACC	1 cut(s)	156
BstENI	CCTNNNNNAGG	1 cut(s)	165
BstF5I	GGATG	1 cut(s)	676
BstFNI	CGCG	1 cut(s)	334
BstHHI	GCGC	1 cut(s)	334
BstKTI	GATC	3 cut(s)	444, 666, 741
BstMAI	GTCTC	1 cut(s)	194
BstMBI	GATC	3 cut(s)	441, 663, 738
BstMWI	GCNNNNNNNGC	7 cut(s)	89, 146, 149, 583, 586, 698, 720
BstNI	CCWGG	1 cut(s)	617
BstNSI	RCATGY	1 cut(s)	23
BstPI	GGTNACC	1 cut(s)	156
BstSCI	CCNGG	2 cut(s)	520, 615
BstSFI	CTRYAG	4 cut(s)	150, 201, 230, 551
BstSLI	GKGCMC	1 cut(s)	276
BstUI	CGCG	1 cut(s)	334
BstV1I	GCAGC	7 cut(s)	136, 152, 187, 241, 413, 576, 589
BstXI	CCANNNNNNTGG	1 cut(s)	731
BsuRI	GGCC	3 cut(s)	124, 228, 723
BtsCI	GGATG	1 cut(s)	676
BtsIMutI	CAGTG	1 cut(s)	445
BveI	ACCTGC	2 cut(s)	158, 572
Cac8I	GCNNGC	2 cut(s)	21, 230
CaiI	CAGNNNCTG	1 cut(s)	143
CfoI	GCGC	1 cut(s)	334
Cfr10I	RCCGGY	1 cut(s)	224
Cfr13I	GGNCC	3 cut(s)	50, 468, 524
Csp6I	GTAC	2 cut(s)	31, 450
CviAII	CATG	3 cut(s)	20, 311, 725
CviQI	GTAC	2 cut(s)	31, 450
DdeI	CTNAG	3 cut(s)	358, 609, 683
DpnI	GATC	3 cut(s)	443, 665, 740
DpnII	GATC	3 cut(s)	441, 663, 738
DraI	TTTAAA	1 cut(s)	63
EaeI	YGGCCR	1 cut(s)	721
Eco130I	CCWWGG	2 cut(s)	464, 527
Eco47I	GGWCC	3 cut(s)	50, 468, 524
Eco57I	CTGAAG	3 cut(s)	165, 414, 714
Eco88I	CYCGRG	1 cut(s)	299
Eco91I	GGTNACC	1 cut(s)	156
EcoNI	CCTNNNNNAGG	1 cut(s)	165
EcoO65I	GGTNACC	1 cut(s)	156
EcoRII	CCWGG	1 cut(s)	615
EcoT14I	CCWWGG	2 cut(s)	464, 527
EcoT22I	ATGCAT	1 cut(s)	21
ErhI	CCWWGG	2 cut(s)	464, 527
FaeI	CATG	3 cut(s)	23, 314, 728
FatI	CATG	3 cut(s)	19, 310, 724
Fnu4HI	GCNGC	9 cut(s)	125, 141, 150, 201, 255, 402, 578, 587, 590
FokI	GGATG	1 cut(s)	663
Fsp4HI	GCNGC	9 cut(s)	125, 141, 150, 201, 255, 402, 578, 587, 590
FspBI	CTAG	3 cut(s)	99, 120, 290
GlaI	GCGC	1 cut(s)	333
GluI	GCNGC	9 cut(s)	125, 141, 150, 201, 255, 402, 578, 587, 590
GsuI	CTGGAG	1 cut(s)	282
HaeIII	GGCC	3 cut(s)	124, 228, 723
HapII	CCGG	3 cut(s)	128, 225, 522
HhaI	GCGC	1 cut(s)	334
Hin1II	CATG	3 cut(s)	23, 314, 728
Hin6I	GCGC	1 cut(s)	332
HinP1I	GCGC	1 cut(s)	332
HindIII	AAGCTT	1 cut(s)	11
HinfI	GANTC	4 cut(s)	207, 490, 598, 668
HpaII	CCGG	3 cut(s)	128, 225, 522
HphI	GGTGA	4 cut(s)	553, 607, 649, 673
Hpy166II	GTNNAC	1 cut(s)	471
Hpy188I	TCNGA	4 cut(s)	408, 426, 483, 684
Hpy188III	TCNNGA	5 cut(s)	261, 301, 352, 377, 655
Hpy8I	GTNNAC	1 cut(s)	471
Hpy99I	CGWCG	1 cut(s)	722
HpyAV	CCTTC	5 cut(s)	389, 426, 496, 634, 638
HpyCH4III	ACNGT	5 cut(s)	38, 54, 115, 449, 661
HpyCH4V	TGCA	7 cut(s)	19, 92, 152, 167, 203, 232, 281
HpyF10VI	GCNNNNNNNGC	7 cut(s)	89, 146, 149, 583, 586, 698, 720
HpyF3I	CTNAG	3 cut(s)	358, 609, 683
Hsp92II	CATG	3 cut(s)	23, 314, 728
HspAI	GCGC	1 cut(s)	332
Kzo9I	GATC	3 cut(s)	441, 663, 738
LmnI	GCTCC	3 cut(s)	329, 572, 748
Lsp1109I	GCAGC	7 cut(s)	136, 152, 187, 241, 413, 576, 589
LweI	GCATC	4 cut(s)	424, 685, 688, 723
MaeI	CTAG	3 cut(s)	99, 120, 290
MaeIII	GTNAC	5 cut(s)	115, 156, 247, 313, 335
MalI	GATC	3 cut(s)	443, 665, 740
MboI	GATC	3 cut(s)	441, 663, 738
MboII	GAAGA	2 cut(s)	707, 748
MhlI	GDGCHC	1 cut(s)	276
MluCI	AATT	2 cut(s)	86, 484
MlyI	GAGTC	3 cut(s)	216, 499, 662
MmeI	TCCRAC	2 cut(s)	310, 404
MnlI	CCTC	6 cut(s)	41, 65, 257, 268, 364, 690
Mph1103I	ATGCAT	1 cut(s)	21
MseI	TTAA	2 cut(s)	62, 477
MspA1I	CMGCKG	3 cut(s)	143, 580, 589
MspI	CCGG	3 cut(s)	128, 225, 522
MspR9I	CCNGG	2 cut(s)	522, 617
Mva1269I	GAATGC	1 cut(s)	459
MvaI	CCWGG	1 cut(s)	617
MvnI	CGCG	1 cut(s)	334
MwoI	GCNNNNNNNGC	7 cut(s)	89, 146, 149, 583, 586, 698, 720
NciI	CCSGG	1 cut(s)	522
NdeII	GATC	3 cut(s)	441, 663, 738
NlaIII	CATG	3 cut(s)	23, 314, 728
NlaIV	GGNNCC	4 cut(s)	223, 305, 585, 750
NmuCI	GTSAC	1 cut(s)	313
NsiI	ATGCAT	1 cut(s)	21
NspI	RCATGY	1 cut(s)	23
PaeI	GCATGC	1 cut(s)	23
PaqCI	CACCTGC	1 cut(s)	572
PctI	GAATGC	1 cut(s)	459
PfeI	GAWTC	1 cut(s)	598
PkrI	GCNGC	9 cut(s)	126, 142, 151, 202, 256, 403, 579, 588, 591
PleI	GAGTC	3 cut(s)	215, 498, 662
PpsI	GAGTC	3 cut(s)	215, 498, 662
Psp6I	CCWGG	1 cut(s)	615
PspEI	GGTNACC	1 cut(s)	156
PspGI	CCWGG	1 cut(s)	615
PspN4I	GGNNCC	4 cut(s)	223, 305, 585, 750
PspPI	GGNCC	3 cut(s)	50, 468, 524
PstI	CTGCAG	3 cut(s)	154, 205, 234
PstNI	CAGNNNCTG	1 cut(s)	143
PvuII	CAGCTG	2 cut(s)	143, 580
RsaI	GTAC	2 cut(s)	32, 451
RsaNI	GTAC	2 cut(s)	31, 450
SaqAI	TTAA	2 cut(s)	62, 477
SatI	GCNGC	9 cut(s)	125, 141, 150, 201, 255, 402, 578, 587, 590
Sau3AI	GATC	3 cut(s)	441, 663, 738
Sau96I	GGNCC	3 cut(s)	50, 468, 524
SchI	GAGTC	3 cut(s)	216, 499, 662
ScrFI	CCNGG	2 cut(s)	522, 617
SduI	GDGCHC	1 cut(s)	276
SfaNI	GCATC	4 cut(s)	424, 685, 688, 723
SfcI	CTRYAG	4 cut(s)	150, 201, 230, 551
SinI	GGWCC	3 cut(s)	50, 468, 524
SmlI	CTYRAG	2 cut(s)	195, 653
SmoI	CTYRAG	2 cut(s)	195, 653
SphI	GCATGC	1 cut(s)	23
Sse9I	AATT	2 cut(s)	86, 484
SsiI	CCGC	4 cut(s)	5, 23, 125, 587
SspMI	CTAG	3 cut(s)	99, 120, 290
StyD4I	CCNGG	2 cut(s)	520, 615
StyI	CCWWGG	2 cut(s)	464, 527
TaaI	ACNGT	5 cut(s)	38, 54, 115, 449, 661
TaqI	TCGA	2 cut(s)	666, 717
TasI	AATT	2 cut(s)	86, 484
TatI	WGTACW	2 cut(s)	30, 449
TauI	GCSGC	2 cut(s)	127, 589
TfiI	GAWTC	1 cut(s)	598
Tru1I	TTAA	2 cut(s)	62, 477
Tru9I	TTAA	2 cut(s)	62, 477
TscAI	CASTG	1 cut(s)	452
TseFI	GTSAC	1 cut(s)	313
TseI	GCWGC	7 cut(s)	140, 149, 200, 254, 401, 577, 589
Tsp45I	GTSAC	1 cut(s)	313
TspRI	CASTG	1 cut(s)	452
VpaK11BI	GGWCC	3 cut(s)	50, 468, 524
XagI	CCTNNNNNAGG	1 cut(s)	165
XapI	RAATTY	2 cut(s)	86, 484
XceI	RCATGY	1 cut(s)	23
XcmI	CCANNNNNNNNNTGG	1 cut(s)	577
XspI	CTAG	3 cut(s)	99, 120, 290
Zsp2I	ATGCAT	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.