Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8263921.1

Orthogroup ID

OG0000313

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 806

Gene Structure 805 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8263921.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

atggataaatatctctcatgcattgctgagattaggagttttgttatttgtgcattaaagtcttttaagtctgaggctgttagtgatgtggctggagaggttgtcgacgttggacaaggagttcagaagttcaaagcgggcgacaaagttgtagcatttttcacccaggctaatggaggtggatttgctgagtttgcaactgctagtgagagtttgactgttgctaggccgcctgaagtttcagcagccgaaggtgcagggttacctattgctggtctcacagctcaccagtgtctcacccaagctgcaggagtcaagcttgatggcactggcccacagaagaacatattggttactgctgcctcaggcggtgtaggtcactatgcagttcaattggcaaagcttgggaacactcacgtgacagccacttgtggtgcacgcaacgttgaatttgtcaagagcttaggggccgatgaggttcttgactacaagacccctgaaggggcagctctgaatagcccttctggtcggaagtacgatgctgttatccactgtgcaactggcattccttggtccacatttgagccgaatttgagtccaaatgggaaggttatagacattactcccagtccaagtgcattgcttactttcgct

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N_2

Protein Analysis

218

Amino Acids

22.37

Weight (kDa)

5.79

Isoelectric Point (pI)

28.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13010
fragaria_vesca	FvH4_2g18240 FvH4_2g18280 FvH4_2g18310 FvH4_2g18320 FvH4_2g18330 FvH4_2g18340 FvH4_2g18350
malus_domestica	MD05G1166800.v1.1 MD05G1167200.v1.1 MD05G1167300.v1.1 MD05G1167400.v1.1 MD05G1167600.v1.1 MD05G1168000.v1.1 MD05G1168200.v1.1 MD05G1168400.v1.1 MD05G1168600.v1.1 MD05G1168700.v1.1 MD05G1168800.v1.1 MD10G1156900.v1.1 MD10G1157000.v1.1 MD10G1157100.v1.1 MD10G1157200.v1.1
prunus_persica	Prupe.8G195100_v2.0.a1 Prupe.8G195100_v2.0.a1 Prupe.8G195300_v2.0.a1 Prupe.8G195600_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G196000_v2.0.a1 Prupe.8G196000_v2.0.a1
pyrus_communis	pycom05g15560 pycom05g15600 pycom05g15610 pycom05g15620 pycom05g15630 pycom10g13550 pycom10g13570
rosa_chinensis	RchiOBHm_Chr6g0283611 RchiOBHm_Chr6g0283631 RchiOBHm_Chr6g0283641 RchiOBHm_Chr6g0283661 RchiOBHm_Chr6g0283681 RchiOBHm_Chr6g0283691 RchiOBHm_Chr6g0283701 RchiOBHm_Chr6g0283711 RchiOBHm_Chr6g0283721
rosa_laevigata	RLG00000012804 RLG00000012807 RLG00000012811
rosa_multiflora	Rmu_co8263921.1_g000001 Rmu_sc0001521.1_g000009 Rmu_sc0002906.1_g000002 Rmu_sc0002906.1_g000011 Rmu_sc0002906.1_g000013 Rmu_sc0005719.1_g000016 Rmu_sc0005719.1_g000022 Rmu_sc0029460.1_g000001
rosa_roxburghii	Rroxscaffold_7G00185240 Rroxscaffold_7G00185250 Rroxscaffold_7G00185270 Rroxscaffold_7G00185280 Rroxscaffold_7G00185290 Rroxscaffold_7G00185330 Rroxscaffold_7G00185350
rosa_rugosa	Rorug06G0156100 Rorug06G0156300 Rorug06G0156400 Rorug06G0156500 Rorug06G0156600 Rorug06G0156700 Rorug06G0156800 Rorug06G0156900 Rorug06G0157000
rosa_samantha	Rh6AG267900 Rh6AG268100 Rh6AG268200 Rh6AG268400 Rh6AG268600 Rh6AG268700 Rh6AG268900 Rh6AG269100 Rh6BG270700 Rh6BG270900 Rh6BG271000 Rh6BG271200 Rh6BG271400 Rh6BG271500 Rh6CG270200 Rh6CG270400 Rh6CG270500 Rh6CG270800 Rh6CG270900 Rh6CG271000 Rh6CG271100 Rh6CG271300 Rh6DG263900 Rh6DG264100 Rh6DG264200 Rh6DG264400 Rh6DG264600 Rh6DG264800 Rh6DG265200
rosa_wichuraiana	Rw6G023210 Rw6G023220 Rw6G023230 Rw6G023240 Rw6G023250 Rw6G023260 Rw6G023270 Rw6G023280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	105
AciI	CCGC	3 cut(s)	137, 230, 369
AclI	AACGTT	1 cut(s)	444
AcsI	RAATTY	2 cut(s)	449, 589
AcuI	CTGAAG	2 cut(s)	255, 519
AcvI	CACGTG	1 cut(s)	418
AfaI	GTAC	1 cut(s)	536
AfiI	CCNNNNNNNGG	3 cut(s)	272, 501, 502
AgsI	TTSAA	3 cut(s)	133, 392, 449
AjnI	CCWGG	1 cut(s)	165
AjuI	GAANNNNNNNTTGG	2 cut(s)	332, 364
AleI	CACNNNNGTG	1 cut(s)	416
AloI	GAACNNNNNNTCC	2 cut(s)	105, 137
AluBI	AGCT	6 cut(s)	284, 305, 319, 403, 462, 509
AluI	AGCT	6 cut(s)	284, 305, 319, 403, 462, 509
Alw21I	GWGCWC	1 cut(s)	439
Alw26I	GTCTC	2 cut(s)	281, 299
Alw44I	GTGCAC	1 cut(s)	435
AoxI	GGCC	3 cut(s)	227, 331, 468
ApaLI	GTGCAC	1 cut(s)	435
ApeKI	GCWGC	4 cut(s)	245, 305, 359, 506
ApoI	RAATTY	2 cut(s)	449, 589
AspS9I	GGNCC	3 cut(s)	332, 468, 573
AsuHPI	GGTGA	3 cut(s)	154, 278, 289
AvaII	GGWCC	1 cut(s)	573
AxyI	CCTNAGG	1 cut(s)	364
BaeGI	GKGCMC	1 cut(s)	439
BbrPI	CACGTG	1 cut(s)	418
Bbv12I	GWGCWC	1 cut(s)	439
BbvI	GCAGC	4 cut(s)	257, 292, 346, 518
BccI	CCATC	1 cut(s)	317
BciT130I	CCWGG	1 cut(s)	167
BcoDI	GTCTC	2 cut(s)	281, 299
BfaI	CTAG	2 cut(s)	204, 225
BfmI	CTRYAG	1 cut(s)	306
BisI	GCNGC	5 cut(s)	230, 246, 306, 360, 507
BlsI	GCNGC	5 cut(s)	231, 247, 307, 361, 508
Bme1390I	CCNGG	1 cut(s)	167
Bme18I	GGWCC	1 cut(s)	573
BmgT120I	GGNCC	3 cut(s)	332, 468, 573
BmiI	GGNNCC	1 cut(s)	469
BmrFI	CCNGG	1 cut(s)	167
BmrI	ACTGGG	1 cut(s)	621
BmsI	GCATC	1 cut(s)	529
BmuI	ACTGGG	1 cut(s)	621
BpmI	CTGGAG	1 cut(s)	114
Bpu10I	CCTNAGC	1 cut(s)	463
BsaAI	YACGTR	1 cut(s)	418
BsaBI	GATNNNNATC	1 cut(s)	9
BsaI	GGTCTC	1 cut(s)	281
BsaJI	CCNNGG	2 cut(s)	165, 569
BsaXI	ACNNNNNCTCC	2 cut(s)	87, 117
Bsc4I	CCNNNNNNNGG	3 cut(s)	272, 501, 502
Bse1I	ACTGG	4 cut(s)	289, 334, 565, 627
Bse21I	CCTNAGG	1 cut(s)	364
Bse3DI	GCAATG	2 cut(s)	21, 638
Bse8I	GATNNNNATC	1 cut(s)	9
BseBI	CCWGG	1 cut(s)	167
BseDI	CCNNGG	2 cut(s)	165, 569
BseJI	GATNNNNATC	1 cut(s)	9
BseLI	CCNNNNNNNGG	3 cut(s)	272, 501, 502
BseMI	GCAATG	2 cut(s)	21, 638
BseMII	CTCAG	4 cut(s)	18, 63, 180, 378
BseNI	ACTGG	4 cut(s)	289, 334, 565, 627
BseSI	GKGCMC	1 cut(s)	439
BseXI	GCAGC	4 cut(s)	257, 292, 346, 518
BsgI	GTGCAG	1 cut(s)	276
BshFI	GGCC	3 cut(s)	229, 333, 470
BsiHKAI	GWGCWC	1 cut(s)	439
BslI	CCNNNNNNNGG	3 cut(s)	272, 501, 502
BsmAI	GTCTC	2 cut(s)	281, 299
BsmI	GAATGC	1 cut(s)	564
BsnI	GGCC	3 cut(s)	229, 333, 470
Bso31I	GGTCTC	1 cut(s)	281
Bsp1286I	GDGCHC	1 cut(s)	439
BspACI	CCGC	3 cut(s)	137, 230, 369
BspANI	GGCC	3 cut(s)	229, 333, 470
BspCNI	CTCAG	4 cut(s)	19, 64, 181, 377
BspLI	GGNNCC	1 cut(s)	469
BspMAI	CTGCAG	1 cut(s)	310
BspTNI	GGTCTC	1 cut(s)	281
BsrDI	GCAATG	2 cut(s)	21, 638
BsrI	ACTGG	4 cut(s)	289, 334, 565, 627
BssECI	CCNNGG	2 cut(s)	165, 569
BssT1I	CCWWGG	1 cut(s)	569
Bst2UI	CCWGG	1 cut(s)	167
Bst4CI	ACNGT	2 cut(s)	220, 554
BstBAI	YACGTR	1 cut(s)	418
BstC8I	GCNNGC	2 cut(s)	139, 439
BstDEI	CTNAG	5 cut(s)	27, 72, 189, 364, 463
BstEII	GGTNACC	1 cut(s)	261
BstMAI	GTCTC	2 cut(s)	281, 299
BstMWI	GCNNNNNNNGC	2 cut(s)	194, 254
BstNI	CCWGG	1 cut(s)	167
BstPI	GGTNACC	1 cut(s)	261
BstSCI	CCNGG	1 cut(s)	165
BstSFI	CTRYAG	1 cut(s)	306
BstSLI	GKGCMC	1 cut(s)	439
BstV1I	GCAGC	4 cut(s)	257, 292, 346, 518
BstXI	CCANNNNNNTGG	1 cut(s)	173
Bsu36I	CCTNAGG	1 cut(s)	364
BsuRI	GGCC	3 cut(s)	229, 333, 470
BtsIMutI	CAGTG	3 cut(s)	296, 327, 550
Cac8I	GCNNGC	2 cut(s)	139, 439
Cfr13I	GGNCC	3 cut(s)	332, 468, 573
Csp6I	GTAC	1 cut(s)	535
CviAII	CATG	1 cut(s)	18
CviQI	GTAC	1 cut(s)	535
DdeI	CTNAG	5 cut(s)	27, 72, 189, 364, 463
Eco130I	CCWWGG	1 cut(s)	569
Eco31I	GGTCTC	1 cut(s)	281
Eco47I	GGWCC	1 cut(s)	573
Eco57I	CTGAAG	2 cut(s)	255, 519
Eco72I	CACGTG	1 cut(s)	418
Eco81I	CCTNAGG	1 cut(s)	364
Eco91I	GGTNACC	1 cut(s)	261
EcoO65I	GGTNACC	1 cut(s)	261
EcoRII	CCWGG	1 cut(s)	165
EcoT14I	CCWWGG	1 cut(s)	569
EcoT22I	ATGCAT	1 cut(s)	23
ErhI	CCWWGG	1 cut(s)	569
FaeI	CATG	1 cut(s)	21
FaiI	YATR	4 cut(s)	19, 347, 384, 614
FatI	CATG	1 cut(s)	17
FauI	CCCGC	1 cut(s)	130
FblI	GTMKAC	1 cut(s)	105
Fnu4HI	GCNGC	5 cut(s)	230, 246, 306, 360, 507
Fsp4HI	GCNGC	5 cut(s)	230, 246, 306, 360, 507
FspBI	CTAG	2 cut(s)	204, 225
GluI	GCNGC	5 cut(s)	230, 246, 306, 360, 507
GsuI	CTGGAG	1 cut(s)	114
HaeIII	GGCC	3 cut(s)	229, 333, 470
Hin1II	CATG	1 cut(s)	21
HincII	GTYRAC	1 cut(s)	106
HindII	GTYRAC	1 cut(s)	106
HindIII	AAGCTT	2 cut(s)	317, 401
HinfI	GANTC	2 cut(s)	312, 595
HphI	GGTGA	3 cut(s)	154, 278, 289
Hpy166II	GTNNAC	3 cut(s)	106, 437, 576
Hpy188I	TCNGA	4 cut(s)	73, 126, 513, 531
Hpy188III	TCNNGA	2 cut(s)	457, 482
Hpy8I	GTNNAC	3 cut(s)	106, 437, 576
Hpy99I	CGWCG	1 cut(s)	110
HpyAV	CCTTC	4 cut(s)	245, 494, 531, 601
HpyCH4III	ACNGT	2 cut(s)	220, 554
HpyCH4IV	ACGT	3 cut(s)	108, 417, 444
HpyCH4V	TGCA	9 cut(s)	21, 53, 197, 257, 308, 386, 437, 557, 638
HpyF10VI	GCNNNNNNNGC	2 cut(s)	194, 254
HpyF3I	CTNAG	5 cut(s)	27, 72, 189, 364, 463
HpySE526I	ACGT	3 cut(s)	108, 417, 444
Hsp92II	CATG	1 cut(s)	21
Lsp1109I	GCAGC	4 cut(s)	257, 292, 346, 518
LweI	GCATC	1 cut(s)	529
MaeI	CTAG	2 cut(s)	204, 225
MaeII	ACGT	3 cut(s)	108, 417, 444
MaeIII	GTNAC	4 cut(s)	261, 352, 377, 418
MboII	GAAGA	1 cut(s)	352
MfeI	CAATTG	1 cut(s)	392
MhlI	GDGCHC	1 cut(s)	439
MluCI	AATT	3 cut(s)	392, 449, 589
MlyI	GAGTC	2 cut(s)	321, 604
MmeI	TCCRAC	2 cut(s)	91, 509
MnlI	CCTC	5 cut(s)	67, 91, 170, 373, 469
Mph1103I	ATGCAT	1 cut(s)	23
MseI	TTAA	2 cut(s)	56, 66
MslI	CAYNNNNRTG	1 cut(s)	416
MspR9I	CCNGG	1 cut(s)	167
MunI	CAATTG	1 cut(s)	392
Mva1269I	GAATGC	1 cut(s)	564
MvaI	CCWGG	1 cut(s)	167
MwoI	GCNNNNNNNGC	2 cut(s)	194, 254
NlaIII	CATG	1 cut(s)	21
NlaIV	GGNNCC	1 cut(s)	469
NmuCI	GTSAC	2 cut(s)	377, 418
NsiI	ATGCAT	1 cut(s)	23
OliI	CACNNNNGTG	1 cut(s)	416
PctI	GAATGC	1 cut(s)	564
PkrI	GCNGC	5 cut(s)	231, 247, 307, 361, 508
PleI	GAGTC	2 cut(s)	320, 603
PmaCI	CACGTG	1 cut(s)	418
PmlI	CACGTG	1 cut(s)	418
PpsI	GAGTC	2 cut(s)	320, 603
Ppu21I	YACGTR	1 cut(s)	418
Psp1406I	AACGTT	1 cut(s)	444
Psp6I	CCWGG	1 cut(s)	165
PspCI	CACGTG	1 cut(s)	418
PspEI	GGTNACC	1 cut(s)	261
PspGI	CCWGG	1 cut(s)	165
PspN4I	GGNNCC	1 cut(s)	469
PspPI	GGNCC	3 cut(s)	332, 468, 573
PstI	CTGCAG	1 cut(s)	310
RsaI	GTAC	1 cut(s)	536
RsaNI	GTAC	1 cut(s)	535
RseI	CAYNNNNRTG	1 cut(s)	416
SalI	GTCGAC	1 cut(s)	104
SaqAI	TTAA	2 cut(s)	56, 66
SatI	GCNGC	5 cut(s)	230, 246, 306, 360, 507
Sau96I	GGNCC	3 cut(s)	332, 468, 573
SchI	GAGTC	2 cut(s)	321, 604
ScrFI	CCNGG	1 cut(s)	167
SduI	GDGCHC	1 cut(s)	439
SfaNI	GCATC	1 cut(s)	529
SfcI	CTRYAG	1 cut(s)	306
SinI	GGWCC	1 cut(s)	573
SmiMI	CAYNNNNRTG	1 cut(s)	416
Sse9I	AATT	3 cut(s)	392, 449, 589
SsiI	CCGC	3 cut(s)	137, 230, 369
SspMI	CTAG	2 cut(s)	204, 225
StyD4I	CCNGG	1 cut(s)	165
StyI	CCWWGG	1 cut(s)	569
TaaI	ACNGT	2 cut(s)	220, 554
TaiI	ACGT	3 cut(s)	111, 420, 447
TaqI	TCGA	1 cut(s)	105
TasI	AATT	3 cut(s)	392, 449, 589
TauI	GCSGC	1 cut(s)	232
Tru1I	TTAA	2 cut(s)	56, 66
Tru9I	TTAA	2 cut(s)	56, 66
TscAI	CASTG	3 cut(s)	296, 334, 557
TseFI	GTSAC	2 cut(s)	377, 418
TseI	GCWGC	4 cut(s)	245, 305, 359, 506
Tsp45I	GTSAC	2 cut(s)	377, 418
TspRI	CASTG	3 cut(s)	296, 334, 557
VneI	GTGCAC	1 cut(s)	435
VpaK11BI	GGWCC	1 cut(s)	573
XapI	RAATTY	2 cut(s)	449, 589
XcmI	CCANNNNNNNNNTGG	1 cut(s)	557
XmiI	GTMKAC	1 cut(s)	105
XspI	CTAG	2 cut(s)	204, 225
Zsp2I	ATGCAT	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.