Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001521.1

Orthogroup ID

OG0000313

Physical Location & Seq

Genomic Coordinates Forward (+)

23518 .. 24405

Gene Structure 888 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001521.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

atgacattatcgggcacagcttgtgatgtggccggagaggttgtcgaggttggacaaggagttcagaatttcaaagtgggcgacgaagttgtcgcagctctaacacttgctgtaagtgctcatttttgttccttttggccgcctgaggtttcagcagccgaagctgccgggttacctgttgctggtctcacagctcaccagtgtctcactgaagccgcaggagtcaagctggatggcacaggccctcagaagaacatattgattaccgctgcctctggaggtgtggggcactatgcagtccaactagctaagctaggaaacacccatgtcacggccacttgtggagctcgtaacattgatttcgtcaagagcttgggggctgatgaggttcttgactacaagacccctgaaggggcagctctgtgtagcccgtctggtcggaaatatgatgccgtgatccactgtgcaacagccattccttggtctacttttaagccgaatttgagtccaaatgggaaggtcatagacattagtcccagtctaagtaactggctcactatggctgtaaacaaactcaccttctccaagaagcagctagtgcagctgatggtgaatcccaaggctgagaacctggattatcttgttaagttggtgaaggaaggaaagctcaagacggtgattgactccagacatcctttgagcaaggttgaagatgcttgggttaagagtatcgatggccatgctactgggaaaatcattgtggagccttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N_2

Protein Analysis

256

Amino Acids

26.86

Weight (kDa)

6.65

Isoelectric Point (pI)

25.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13010
fragaria_vesca	FvH4_2g18240 FvH4_2g18280 FvH4_2g18310 FvH4_2g18320 FvH4_2g18330 FvH4_2g18340 FvH4_2g18350
malus_domestica	MD05G1166800.v1.1 MD05G1167200.v1.1 MD05G1167300.v1.1 MD05G1167400.v1.1 MD05G1167600.v1.1 MD05G1168000.v1.1 MD05G1168200.v1.1 MD05G1168400.v1.1 MD05G1168600.v1.1 MD05G1168700.v1.1 MD05G1168800.v1.1 MD10G1156900.v1.1 MD10G1157000.v1.1 MD10G1157100.v1.1 MD10G1157200.v1.1
prunus_persica	Prupe.8G195100_v2.0.a1 Prupe.8G195100_v2.0.a1 Prupe.8G195300_v2.0.a1 Prupe.8G195600_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G196000_v2.0.a1 Prupe.8G196000_v2.0.a1
pyrus_communis	pycom05g15560 pycom05g15600 pycom05g15610 pycom05g15620 pycom05g15630 pycom10g13550 pycom10g13570
rosa_chinensis	RchiOBHm_Chr6g0283611 RchiOBHm_Chr6g0283631 RchiOBHm_Chr6g0283641 RchiOBHm_Chr6g0283661 RchiOBHm_Chr6g0283681 RchiOBHm_Chr6g0283691 RchiOBHm_Chr6g0283701 RchiOBHm_Chr6g0283711 RchiOBHm_Chr6g0283721
rosa_laevigata	RLG00000012804 RLG00000012807 RLG00000012811
rosa_multiflora	Rmu_co8263921.1_g000001 Rmu_sc0001521.1_g000009 Rmu_sc0002906.1_g000002 Rmu_sc0002906.1_g000011 Rmu_sc0002906.1_g000013 Rmu_sc0005719.1_g000016 Rmu_sc0005719.1_g000022 Rmu_sc0029460.1_g000001
rosa_roxburghii	Rroxscaffold_7G00185240 Rroxscaffold_7G00185250 Rroxscaffold_7G00185270 Rroxscaffold_7G00185280 Rroxscaffold_7G00185290 Rroxscaffold_7G00185330 Rroxscaffold_7G00185350
rosa_rugosa	Rorug06G0156100 Rorug06G0156300 Rorug06G0156400 Rorug06G0156500 Rorug06G0156600 Rorug06G0156700 Rorug06G0156800 Rorug06G0156900 Rorug06G0157000
rosa_samantha	Rh6AG267900 Rh6AG268100 Rh6AG268200 Rh6AG268400 Rh6AG268600 Rh6AG268700 Rh6AG268900 Rh6AG269100 Rh6BG270700 Rh6BG270900 Rh6BG271000 Rh6BG271200 Rh6BG271400 Rh6BG271500 Rh6CG270200 Rh6CG270400 Rh6CG270500 Rh6CG270800 Rh6CG270900 Rh6CG271000 Rh6CG271100 Rh6CG271300 Rh6DG263900 Rh6DG264100 Rh6DG264200 Rh6DG264400 Rh6DG264600 Rh6DG264800 Rh6DG265200
rosa_wichuraiana	Rw6G023210 Rw6G023220 Rw6G023230 Rw6G023240 Rw6G023250 Rw6G023260 Rw6G023270 Rw6G023280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	89
AccB7I	CCANNNNNTGG	1 cut(s)	480
AccI	GTMKAC	1 cut(s)	485
AciI	CCGC	3 cut(s)	140, 216, 267
AclWI	GGATC	1 cut(s)	451
AcoI	YGGCCR	4 cut(s)	30, 137, 333, 736
AcsI	RAATTY	2 cut(s)	67, 499
AcuI	CTGAAG	2 cut(s)	231, 429
AfiI	CCNNNNNNNGG	5 cut(s)	182, 331, 411, 412, 480
AgsI	TTSAA	2 cut(s)	73, 710
AjnI	CCWGG	1 cut(s)	630
AloI	GAACNNNNNNTCC	2 cut(s)	45, 77
Alw21I	GWGCWC	2 cut(s)	121, 349
Alw26I	GTCTC	2 cut(s)	191, 209
AlwI	GGATC	1 cut(s)	451
AoxI	GGCC	5 cut(s)	30, 137, 241, 333, 736
ApeKI	GCWGC	7 cut(s)	95, 155, 164, 269, 416, 592, 601
ApoI	RAATTY	2 cut(s)	67, 499
AspS9I	GGNCC	1 cut(s)	242
AsuC2I	CCSGG	1 cut(s)	169
AsuHPI	GGTGA	5 cut(s)	188, 568, 622, 664, 688
AxyI	CCTNAGG	1 cut(s)	144
BaeGI	GKGCMC	2 cut(s)	17, 291
BalI	TGGCCA	1 cut(s)	738
BanII	GRGCYC	1 cut(s)	349
Bbv12I	GWGCWC	2 cut(s)	121, 349
BbvI	GCAGC	7 cut(s)	107, 151, 167, 256, 428, 604, 613
BccI	CCATC	3 cut(s)	227, 601, 728
BceAI	ACGGC	2 cut(s)	348, 437
BcgI	CGANNNNNNTGC	2 cut(s)	722, 756
BciT130I	CCWGG	1 cut(s)	632
BcnI	CCSGG	1 cut(s)	169
BcoDI	GTCTC	2 cut(s)	191, 209
BfaI	CTAG	3 cut(s)	305, 314, 596
BisI	GCNGC	9 cut(s)	96, 140, 156, 165, 216, 270, 417, 593, 602
BlpI	GCTNAGC	1 cut(s)	309
BlsI	GCNGC	9 cut(s)	97, 141, 157, 166, 217, 271, 418, 594, 603
Bme1390I	CCNGG	2 cut(s)	169, 632
BmgT120I	GGNCC	1 cut(s)	242
BmiI	GGNNCC	1 cut(s)	765
BmrFI	CCNGG	2 cut(s)	169, 632
BmrI	ACTGGG	2 cut(s)	531, 756
BmsI	GCATC	2 cut(s)	439, 703
BmuI	ACTGGG	2 cut(s)	531, 756
BoxI	GACNNNNGTC	1 cut(s)	531
BpmI	CTGGAG	2 cut(s)	297, 670
Bpu1102I	GCTNAGC	1 cut(s)	309
BpuEI	CTTGAG	1 cut(s)	653
BpuMI	CCSGG	1 cut(s)	169
Bsa29I	ATCGAT	1 cut(s)	732
BsaI	GGTCTC	1 cut(s)	191
BsaJI	CCNNGG	2 cut(s)	479, 618
BsaXI	ACNNNNNCTCC	2 cut(s)	27, 57
Bsc4I	CCNNNNNNNGG	5 cut(s)	182, 331, 411, 412, 480
Bse1I	ACTGG	4 cut(s)	199, 537, 554, 751
Bse21I	CCTNAGG	1 cut(s)	144
BseBI	CCWGG	1 cut(s)	632
BseCI	ATCGAT	1 cut(s)	732
BseDI	CCNNGG	2 cut(s)	479, 618
BseGI	GGATG	2 cut(s)	238, 691
BseLI	CCNNNNNNNGG	5 cut(s)	182, 331, 411, 412, 480
BseMII	CTCAG	3 cut(s)	135, 260, 615
BseNI	ACTGG	4 cut(s)	199, 537, 554, 751
BseSI	GKGCMC	2 cut(s)	17, 291
BseXI	GCAGC	7 cut(s)	107, 151, 167, 256, 428, 604, 613
BsgI	GTGCAG	1 cut(s)	620
BshFI	GGCC	5 cut(s)	32, 139, 243, 335, 738
BshVI	ATCGAT	1 cut(s)	732
BsiHKAI	GWGCWC	2 cut(s)	121, 349
BsiSI	CCGG	2 cut(s)	33, 168
BslFI	GGGAC	1 cut(s)	519
BslI	CCNNNNNNNGG	5 cut(s)	182, 331, 411, 412, 480
BsmAI	GTCTC	2 cut(s)	191, 209
BsmFI	GGGAC	1 cut(s)	519
BsnI	GGCC	5 cut(s)	32, 139, 243, 335, 738
Bso31I	GGTCTC	1 cut(s)	191
Bsp1286I	GDGCHC	4 cut(s)	17, 121, 291, 349
Bsp143I	GATC	1 cut(s)	456
Bsp1720I	GCTNAGC	1 cut(s)	309
BspACI	CCGC	3 cut(s)	140, 216, 267
BspANI	GGCC	5 cut(s)	32, 139, 243, 335, 738
BspCNI	CTCAG	3 cut(s)	136, 259, 616
BspDI	ATCGAT	1 cut(s)	732
BspLI	GGNNCC	1 cut(s)	765
BspPI	GGATC	1 cut(s)	451
BspTNI	GGTCTC	1 cut(s)	191
BsrI	ACTGG	4 cut(s)	199, 537, 554, 751
BssECI	CCNNGG	2 cut(s)	479, 618
BssMI	GATC	1 cut(s)	456
BssT1I	CCWWGG	2 cut(s)	479, 618
Bst2UI	CCWGG	1 cut(s)	632
Bst4CI	ACNGT	2 cut(s)	464, 676
BstAPI	GCANNNNNTGC	1 cut(s)	598
BstDEI	CTNAG	5 cut(s)	144, 246, 309, 542, 624
BstEII	GGTNACC	1 cut(s)	171
BstF5I	GGATG	2 cut(s)	238, 691
BstKTI	GATC	1 cut(s)	459
BstMAI	GTCTC	2 cut(s)	191, 209
BstMBI	GATC	1 cut(s)	456
BstMWI	GCNNNNNNNGC	5 cut(s)	116, 161, 164, 598, 601
BstNI	CCWGG	1 cut(s)	632
BstPAI	GACNNNNGTC	1 cut(s)	531
BstPI	GGTNACC	1 cut(s)	171
BstSCI	CCNGG	2 cut(s)	167, 630
BstSLI	GKGCMC	2 cut(s)	17, 291
BstV1I	GCAGC	7 cut(s)	107, 151, 167, 256, 428, 604, 613
BstXI	CCANNNNNNTGG	1 cut(s)	746
Bsu15I	ATCGAT	1 cut(s)	732
Bsu36I	CCTNAGG	1 cut(s)	144
BsuRI	GGCC	5 cut(s)	32, 139, 243, 335, 738
BsuTUI	ATCGAT	1 cut(s)	732
BtsCI	GGATG	2 cut(s)	238, 691
BtsIMutI	CAGTG	3 cut(s)	206, 207, 460
Cfr13I	GGNCC	1 cut(s)	242
ClaI	ATCGAT	1 cut(s)	732
CviAII	CATG	2 cut(s)	326, 740
DdeI	CTNAG	5 cut(s)	144, 246, 309, 542, 624
DpnI	GATC	1 cut(s)	458
DpnII	GATC	1 cut(s)	456
DrdI	GACNNNNNNGTC	1 cut(s)	89
DseDI	GACNNNNNNGTC	1 cut(s)	89
EaeI	YGGCCR	4 cut(s)	30, 137, 333, 736
Ecl136II	GAGCTC	1 cut(s)	347
Eco130I	CCWWGG	2 cut(s)	479, 618
Eco24I	GRGCYC	1 cut(s)	349
Eco31I	GGTCTC	1 cut(s)	191
Eco53kI	GAGCTC	1 cut(s)	347
Eco57I	CTGAAG	2 cut(s)	231, 429
Eco81I	CCTNAGG	1 cut(s)	144
Eco91I	GGTNACC	1 cut(s)	171
EcoICRI	GAGCTC	1 cut(s)	347
EcoO109I	RGGNCCY	1 cut(s)	242
EcoO65I	GGTNACC	1 cut(s)	171
EcoRII	CCWGG	1 cut(s)	630
EcoT14I	CCWWGG	2 cut(s)	479, 618
EcoT38I	GRGCYC	1 cut(s)	349
ErhI	CCWWGG	2 cut(s)	479, 618
FaeI	CATG	2 cut(s)	329, 743
FaiI	YATR	7 cut(s)	257, 294, 327, 447, 524, 560, 741
FaqI	GGGAC	1 cut(s)	519
FatI	CATG	2 cut(s)	325, 739
FblI	GTMKAC	1 cut(s)	485
Fnu4HI	GCNGC	9 cut(s)	96, 140, 156, 165, 216, 270, 417, 593, 602
FokI	GGATG	2 cut(s)	245, 678
FriOI	GRGCYC	1 cut(s)	349
Fsp4HI	GCNGC	9 cut(s)	96, 140, 156, 165, 216, 270, 417, 593, 602
FspBI	CTAG	3 cut(s)	305, 314, 596
GluI	GCNGC	9 cut(s)	96, 140, 156, 165, 216, 270, 417, 593, 602
GsuI	CTGGAG	2 cut(s)	297, 670
HaeIII	GGCC	5 cut(s)	32, 139, 243, 335, 738
HapII	CCGG	2 cut(s)	33, 168
Hin1II	CATG	2 cut(s)	329, 743
HinfI	GANTC	4 cut(s)	222, 505, 613, 683
HpaII	CCGG	2 cut(s)	33, 168
HphI	GGTGA	5 cut(s)	188, 568, 622, 664, 688
Hpy166II	GTNNAC	2 cut(s)	486, 568
Hpy188I	TCNGA	3 cut(s)	66, 249, 441
Hpy188III	TCNNGA	5 cut(s)	276, 367, 392, 670, 687
Hpy8I	GTNNAC	2 cut(s)	486, 568
Hpy99I	CGWCG	1 cut(s)	86
HpyAV	CCTTC	5 cut(s)	404, 511, 589, 649, 653
HpyCH4III	ACNGT	2 cut(s)	464, 676
HpyCH4V	TGCA	3 cut(s)	296, 467, 601
HpyF10VI	GCNNNNNNNGC	5 cut(s)	116, 161, 164, 598, 601
HpyF3I	CTNAG	5 cut(s)	144, 246, 309, 542, 624
Hsp92II	CATG	2 cut(s)	329, 743
Kzo9I	GATC	1 cut(s)	456
LmnI	GCTCC	2 cut(s)	344, 763
Lsp1109I	GCAGC	7 cut(s)	107, 151, 167, 256, 428, 604, 613
LweI	GCATC	2 cut(s)	439, 703
MaeI	CTAG	3 cut(s)	305, 314, 596
MaeIII	GTNAC	4 cut(s)	171, 328, 350, 545
MalI	GATC	1 cut(s)	458
MboI	GATC	1 cut(s)	456
MboII	GAAGA	2 cut(s)	262, 722
MhlI	GDGCHC	4 cut(s)	17, 121, 291, 349
MlsI	TGGCCA	1 cut(s)	738
MluCI	AATT	2 cut(s)	67, 499
MluNI	TGGCCA	1 cut(s)	738
MlyI	GAGTC	3 cut(s)	231, 514, 677
MmeI	TCCRAC	3 cut(s)	31, 325, 419
MnlI	CCTC	7 cut(s)	31, 40, 139, 255, 272, 283, 379
Mox20I	TGGCCA	1 cut(s)	738
MscI	TGGCCA	1 cut(s)	738
MseI	TTAA	4 cut(s)	492, 645, 723, 769
Msp20I	TGGCCA	1 cut(s)	738
MspA1I	CMGCKG	2 cut(s)	269, 604
MspI	CCGG	2 cut(s)	33, 168
MspR9I	CCNGG	2 cut(s)	169, 632
MvaI	CCWGG	1 cut(s)	632
MwoI	GCNNNNNNNGC	5 cut(s)	116, 161, 164, 598, 601
NciI	CCSGG	1 cut(s)	169
NdeII	GATC	1 cut(s)	456
NlaIII	CATG	2 cut(s)	329, 743
NlaIV	GGNNCC	1 cut(s)	765
NmuCI	GTSAC	1 cut(s)	328
PfeI	GAWTC	1 cut(s)	613
PflMI	CCANNNNNTGG	1 cut(s)	480
PkrI	GCNGC	9 cut(s)	97, 141, 157, 166, 217, 271, 418, 594, 603
PleI	GAGTC	3 cut(s)	230, 513, 677
PpsI	GAGTC	3 cut(s)	230, 513, 677
PshAI	GACNNNNGTC	1 cut(s)	531
Psp124BI	GAGCTC	1 cut(s)	349
Psp6I	CCWGG	1 cut(s)	630
PspEI	GGTNACC	1 cut(s)	171
PspGI	CCWGG	1 cut(s)	630
PspN4I	GGNNCC	1 cut(s)	765
PspPI	GGNCC	1 cut(s)	242
PvuII	CAGCTG	1 cut(s)	604
SacI	GAGCTC	1 cut(s)	349
SaqAI	TTAA	4 cut(s)	492, 645, 723, 769
SatI	GCNGC	9 cut(s)	96, 140, 156, 165, 216, 270, 417, 593, 602
Sau3AI	GATC	1 cut(s)	456
Sau96I	GGNCC	1 cut(s)	242
SchI	GAGTC	3 cut(s)	231, 514, 677
ScrFI	CCNGG	2 cut(s)	169, 632
SduI	GDGCHC	4 cut(s)	17, 121, 291, 349
SfaNI	GCATC	2 cut(s)	439, 703
SmlI	CTYRAG	1 cut(s)	668
SmoI	CTYRAG	1 cut(s)	668
Sse9I	AATT	2 cut(s)	67, 499
SsiI	CCGC	3 cut(s)	140, 216, 267
SspMI	CTAG	3 cut(s)	305, 314, 596
SstI	GAGCTC	1 cut(s)	349
StyD4I	CCNGG	2 cut(s)	167, 630
StyI	CCWWGG	2 cut(s)	479, 618
TaaI	ACNGT	2 cut(s)	464, 676
TaqI	TCGA	2 cut(s)	45, 732
TasI	AATT	2 cut(s)	67, 499
TauI	GCSGC	2 cut(s)	142, 218
TfiI	GAWTC	1 cut(s)	613
Tru1I	TTAA	4 cut(s)	492, 645, 723, 769
Tru9I	TTAA	4 cut(s)	492, 645, 723, 769
TscAI	CASTG	3 cut(s)	206, 214, 467
TseFI	GTSAC	1 cut(s)	328
TseI	GCWGC	7 cut(s)	95, 155, 164, 269, 416, 592, 601
Tsp45I	GTSAC	1 cut(s)	328
TspRI	CASTG	3 cut(s)	206, 214, 467
Van91I	CCANNNNNTGG	1 cut(s)	480
XapI	RAATTY	2 cut(s)	67, 499
XmiI	GTMKAC	1 cut(s)	485
XspI	CTAG	3 cut(s)	305, 314, 596

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.