Rw6G023280

quinone-oxidoreductase homolog, chloroplastic

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Forward (+)
45585930 .. 45587902
1973 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G023280.1

Sequence Viewer

Length: 993 bp
ATGGCAAAAAAGCTCATGCATGTCCTTCAATACAATGCTTATGGTGGAGGTCCTTCAGTCTTAAAGCATGTTGAAGTTCCGGTTCCCACTCCAAATAAAGATGAAGTGTTGATGAAATTGGAGGCAGCGAGTCTAAATCCATTTGATTGGAAGGTTCAGAAGGGCATGATTTGGCCTTTGCTGCCTCGCAAGTTTCCACATATACCTGGCACTGATGTGGCAGGAGAGGTTGTAGAGGTTGGACCAGAAGTCAAAAATTTCAAAGCCGGTGACAAAGTTGTAGCCATGGTTAATCCTCTTAGTGGAGGTGGTCTAGCTGAGTTCACCGTGACAAAGGAGAGCTTGACTGTTGCAAGGCCACCCGAAGTTTCAGCAGCCACTGCTGTAGGATTACCTGTTGCTGGTCTCACAGCTCACCAGGCACTCTGTCAGTCTGCTGGAGTCAAGCTTGATGGAAGTGGCCAACAAGCAAACATTCTGATCACAGCCGCCTCAGGCGGTGTAGGTCACTATGCGGTTCAATTGGCAAAGCTTGGGAACACTCACGTGACAGCCACTTGTGGTGCACGCAACATTGAATTCATCAAGAGCTTAGGGGCTGATGAGGTTCTCGACTACAAGACTCCAGAAGGAGCTGCTCTGAAGAGTCCATCTGGACGGAAATATGATGCCGTGATCCATTGTGCTACAGGCATTCCTTGGTCAACTTTTGAACCTAATTTAAGTGCAAGTGGTAAGGTAATAGATATTACTCCTGGCCTCAATGCAGTGATGAGTTTTGCTGTAGGAAAGCTTACCTTTTCCAAGAAGCAACTAGTGCCACTGCTCTTAGCTCCCAAGGCCGAGAACCTGGATTACCTTCTGAAGTTGGTTAGAGAAGGGAAGCTCAAGACAGTAATCGACTCCAAGTATCCCCTGACCAAGGCTGAAGATGCTTGGGCTAAGAGTATTGATGGTCATGCTACAGGAAAGATAATTGTGGAGACTCTGTAG

Protein Analysis

330

Amino Acids

34.81

Weight (kDa)

8.9

Isoelectric Point (pI)

30.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 33 - 118 1.2e-16 Alcohol dehydrogenase GroES-like domain
ADH_zinc_N PF00107 167 - 230 3e-09 Zinc-binding dehydrogenase
ADH_zinc_N_2 PF13602 198 - 327 2e-21 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000313)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G13010
fragaria_vesca FvH4_2g18240 FvH4_2g18280 FvH4_2g18310 FvH4_2g18320 FvH4_2g18330 FvH4_2g18340 FvH4_2g18350
malus_domestica MD05G1166800.v1.1 MD05G1167200.v1.1 MD05G1167300.v1.1 MD05G1167400.v1.1 MD05G1167600.v1.1 MD05G1168000.v1.1 MD05G1168200.v1.1 MD05G1168400.v1.1 MD05G1168600.v1.1 MD05G1168700.v1.1 MD05G1168800.v1.1 MD10G1156900.v1.1 MD10G1157000.v1.1 MD10G1157100.v1.1 MD10G1157200.v1.1
prunus_persica Prupe.8G195100_v2.0.a1 Prupe.8G195100_v2.0.a1 Prupe.8G195300_v2.0.a1 Prupe.8G195600_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G196000_v2.0.a1 Prupe.8G196000_v2.0.a1
pyrus_communis pycom05g15560 pycom05g15600 pycom05g15610 pycom05g15620 pycom05g15630 pycom10g13550 pycom10g13570
rosa_chinensis RchiOBHm_Chr6g0283611 RchiOBHm_Chr6g0283631 RchiOBHm_Chr6g0283641 RchiOBHm_Chr6g0283661 RchiOBHm_Chr6g0283681 RchiOBHm_Chr6g0283691 RchiOBHm_Chr6g0283701 RchiOBHm_Chr6g0283711 RchiOBHm_Chr6g0283721
rosa_laevigata RLG00000012804 RLG00000012807 RLG00000012811
rosa_multiflora Rmu_co8263921.1_g000001 Rmu_sc0001521.1_g000009 Rmu_sc0002906.1_g000002 Rmu_sc0002906.1_g000011 Rmu_sc0002906.1_g000013 Rmu_sc0005719.1_g000016 Rmu_sc0005719.1_g000022 Rmu_sc0029460.1_g000001
rosa_roxburghii Rroxscaffold_7G00185240 Rroxscaffold_7G00185250 Rroxscaffold_7G00185270 Rroxscaffold_7G00185280 Rroxscaffold_7G00185290 Rroxscaffold_7G00185330 Rroxscaffold_7G00185350
rosa_rugosa Rorug06G0156100 Rorug06G0156300 Rorug06G0156400 Rorug06G0156500 Rorug06G0156600 Rorug06G0156700 Rorug06G0156800 Rorug06G0156900 Rorug06G0157000
rosa_samantha Rh6AG267900 Rh6AG268100 Rh6AG268200 Rh6AG268400 Rh6AG268600 Rh6AG268700 Rh6AG268900 Rh6AG269100 Rh6BG270700 Rh6BG270900 Rh6BG271000 Rh6BG271200 Rh6BG271400 Rh6BG271500 Rh6CG270200 Rh6CG270400 Rh6CG270500 Rh6CG270800 Rh6CG270900 Rh6CG271000 Rh6CG271100 Rh6CG271300 Rh6DG263900 Rh6DG264100 Rh6DG264200 Rh6DG264400 Rh6DG264600 Rh6DG264800 Rh6DG265200
rosa_wichuraiana Rw6G023210 Rw6G023220 Rw6G023230 Rw6G023240 Rw6G023250 Rw6G023260 Rw6G023270 Rw6G023280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 489, 498, 515
AclWI GGATC 1 cut(s) 670
AcoI YGGCCR 1 cut(s) 460
AcsI RAATTY 2 cut(s) 256, 578
AcuI CTGAAG 4 cut(s) 39, 662, 884, 948
AcvI CACGTG 1 cut(s) 547
AfiI CCNNNNNNNGG 3 cut(s) 302, 401, 922
AgsI TTSAA 6 cut(s) 29, 74, 262, 521, 578, 713
AhdI GACNNNNNGTC 1 cut(s) 248
AhlI ACTAGT 1 cut(s) 814
AjnI CCWGG 4 cut(s) 205, 417, 754, 849
AleI CACNNNNGTG 2 cut(s) 215, 545
Alw21I GWGCWC 1 cut(s) 568
Alw26I GTCTC 2 cut(s) 410, 977
Alw44I GTGCAC 1 cut(s) 564
AlwI GGATC 1 cut(s) 670
AlwNI CAGNNNCTG 1 cut(s) 380
AoxI GGCC 5 cut(s) 173, 356, 460, 757, 840
ApaLI GTGCAC 1 cut(s) 564
ApeKI GCWGC 4 cut(s) 125, 181, 374, 635
ApoI RAATTY 2 cut(s) 256, 578
AspS9I GGNCC 2 cut(s) 50, 242
AsuHPI GGTGA 3 cut(s) 281, 316, 407
AvaII GGWCC 2 cut(s) 50, 242
AxyI CCTNAGG 1 cut(s) 493
BaeGI GKGCMC 1 cut(s) 568
BalI TGGCCA 1 cut(s) 462
BbrPI CACGTG 1 cut(s) 547
Bbv12I GWGCWC 1 cut(s) 568
BbvI GCAGC 4 cut(s) 137, 168, 386, 622
BccI CCATC 3 cut(s) 446, 658, 947
BceAI ACGGC 1 cut(s) 656
BciT130I CCWGG 4 cut(s) 207, 419, 756, 851
BciVI GTATCC 1 cut(s) 921
BclI TGATCA 1 cut(s) 480
BcoDI GTCTC 2 cut(s) 410, 977
BcuI ACTAGT 1 cut(s) 814
BfaI CTAG 2 cut(s) 314, 815
BfmI CTRYAG 5 cut(s) 384, 687, 783, 963, 989
BfuI GTATCC 1 cut(s) 921
BisI GCNGC 5 cut(s) 126, 182, 375, 489, 636
BlsI GCNGC 5 cut(s) 127, 183, 376, 490, 637
Bme1390I CCNGG 4 cut(s) 207, 419, 756, 851
Bme18I GGWCC 2 cut(s) 50, 242
BmeRI GACNNNNNGTC 1 cut(s) 248
BmgT120I GGNCC 2 cut(s) 50, 242
BmiI GGNNCC 1 cut(s) 84
BmrFI CCNGG 4 cut(s) 207, 419, 756, 851
BmsI GCATC 2 cut(s) 658, 922
BpmI CTGGAG 2 cut(s) 459, 609
Bpu10I CCTNAGC 1 cut(s) 592
BpuEI CTTGAG 1 cut(s) 872
BsaAI YACGTR 1 cut(s) 547
BsaI GGTCTC 1 cut(s) 410
BsaJI CCNNGG 4 cut(s) 285, 698, 837, 921
BsaWI WCCGGW 1 cut(s) 79
BsaXI ACNNNNNCTCC 3 cut(s) 216, 246, 974
Bsc4I CCNNNNNNNGG 3 cut(s) 302, 401, 922
Bse118I RCCGGY 1 cut(s) 266
Bse21I CCTNAGG 1 cut(s) 493
BseBI CCWGG 4 cut(s) 207, 419, 756, 851
BseDI CCNNGG 4 cut(s) 285, 698, 837, 921
BseLI CCNNNNNNNGG 3 cut(s) 302, 401, 922
BseMII CTCAG 2 cut(s) 309, 507
BseSI GKGCMC 1 cut(s) 568
BseXI GCAGC 4 cut(s) 137, 168, 386, 622
BshFI GGCC 5 cut(s) 175, 358, 462, 759, 842
BsiHKAI GWGCWC 1 cut(s) 568
BsiSI CCGG 2 cut(s) 80, 267
BslI CCNNNNNNNGG 3 cut(s) 302, 401, 922
BsmAI GTCTC 2 cut(s) 410, 977
BsmI GAATGC 1 cut(s) 693
BsnI GGCC 5 cut(s) 175, 358, 462, 759, 842
Bso31I GGTCTC 1 cut(s) 410
Bsp1286I GDGCHC 1 cut(s) 568
Bsp143I GATC 2 cut(s) 480, 675
Bsp19I CCATGG 1 cut(s) 285
BspACI CCGC 3 cut(s) 489, 498, 515
BspANI GGCC 5 cut(s) 175, 358, 462, 759, 842
BspCNI CTCAG 2 cut(s) 310, 506
BspLI GGNNCC 1 cut(s) 84
BspPI GGATC 1 cut(s) 670
BspTNI GGTCTC 1 cut(s) 410
BsrFI RCCGGY 1 cut(s) 266
BssAI RCCGGY 1 cut(s) 266
BssECI CCNNGG 4 cut(s) 285, 698, 837, 921
BssMI GATC 2 cut(s) 480, 675
BssT1I CCWWGG 4 cut(s) 285, 698, 837, 921
Bst2UI CCWGG 4 cut(s) 207, 419, 756, 851
Bst4CI ACNGT 3 cut(s) 328, 349, 895
Bst6I CTCTTC 1 cut(s) 638
BstAPI GCANNNNNTGC 2 cut(s) 380, 817
BstBAI YACGTR 1 cut(s) 547
BstC8I GCNNGC 1 cut(s) 568
BstDEI CTNAG 6 cut(s) 299, 318, 493, 592, 829, 942
BstDSI CCRYGG 1 cut(s) 285
BstENI CCTNNNNNAGG 1 cut(s) 920
BstKTI GATC 2 cut(s) 483, 678
BstMAI GTCTC 2 cut(s) 410, 977
BstMBI GATC 2 cut(s) 480, 675
BstMWI GCNNNNNNNGC 6 cut(s) 181, 380, 419, 817, 839, 932
BstNI CCWGG 4 cut(s) 207, 419, 756, 851
BstNSI RCATGY 2 cut(s) 23, 71
BstSCI CCNGG 4 cut(s) 205, 417, 754, 849
BstSFI CTRYAG 5 cut(s) 384, 687, 783, 963, 989
BstSLI GKGCMC 1 cut(s) 568
BstV1I GCAGC 4 cut(s) 137, 168, 386, 622
BstXI CCANNNNNNTGG 1 cut(s) 147
Bsu36I CCTNAGG 1 cut(s) 493
BsuI GTATCC 1 cut(s) 921
BsuRI GGCC 5 cut(s) 175, 358, 462, 759, 842
BtgI CCRYGG 1 cut(s) 285
BtsI GCAGTG 3 cut(s) 378, 774, 821
BtsIMutI CAGTG 4 cut(s) 210, 378, 774, 821
Cac8I GCNNGC 1 cut(s) 568
CaiI CAGNNNCTG 1 cut(s) 380
Cfr10I RCCGGY 1 cut(s) 266
Cfr13I GGNCC 2 cut(s) 50, 242
CviAII CATG 6 cut(s) 16, 20, 68, 166, 286, 959
DdeI CTNAG 6 cut(s) 299, 318, 493, 592, 829, 942
DpnI GATC 2 cut(s) 482, 677
DpnII GATC 2 cut(s) 480, 675
DriI GACNNNNNGTC 1 cut(s) 248
EaeI YGGCCR 1 cut(s) 460
Eam1104I CTCTTC 1 cut(s) 638
Eam1105I GACNNNNNGTC 1 cut(s) 248
EarI CTCTTC 1 cut(s) 638
Eco130I CCWWGG 4 cut(s) 285, 698, 837, 921
Eco31I GGTCTC 1 cut(s) 410
Eco47I GGWCC 2 cut(s) 50, 242
Eco57I CTGAAG 4 cut(s) 39, 662, 884, 948
Eco72I CACGTG 1 cut(s) 547
Eco81I CCTNAGG 1 cut(s) 493
EcoNI CCTNNNNNAGG 1 cut(s) 920
EcoO109I RGGNCCY 1 cut(s) 50
EcoRI GAATTC 1 cut(s) 578
EcoRII CCWGG 4 cut(s) 205, 417, 754, 849
EcoT14I CCWWGG 4 cut(s) 285, 698, 837, 921
EcoT22I ATGCAT 1 cut(s) 21
ErhI CCWWGG 4 cut(s) 285, 698, 837, 921
FaeI CATG 6 cut(s) 19, 23, 71, 169, 289, 962
FalI AAGNNNNNCTT 4 cut(s) 326, 358, 782, 814
FatI CATG 6 cut(s) 15, 19, 67, 165, 285, 958
FbaI TGATCA 1 cut(s) 480
Fnu4HI GCNGC 5 cut(s) 126, 182, 375, 489, 636
Fsp4HI GCNGC 5 cut(s) 126, 182, 375, 489, 636
FspBI CTAG 2 cut(s) 314, 815
GluI GCNGC 5 cut(s) 126, 182, 375, 489, 636
GsuI CTGGAG 2 cut(s) 459, 609
HaeIII GGCC 5 cut(s) 175, 358, 462, 759, 842
HapII CCGG 2 cut(s) 80, 267
Hin1II CATG 6 cut(s) 19, 23, 71, 169, 289, 962
HincII GTYRAC 1 cut(s) 705
HindII GTYRAC 1 cut(s) 705
HindIII AAGCTT 3 cut(s) 446, 530, 791
HinfI GANTC 6 cut(s) 130, 441, 622, 646, 902, 985
HpaII CCGG 2 cut(s) 80, 267
HphI GGTGA 3 cut(s) 281, 316, 407
Hpy166II GTNNAC 3 cut(s) 324, 566, 705
Hpy188I TCNGA 4 cut(s) 159, 480, 642, 864
Hpy188III TCNNGA 5 cut(s) 586, 611, 626, 654, 889
Hpy8I GTNNAC 3 cut(s) 324, 566, 705
HpyAV CCTTC 7 cut(s) 35, 63, 145, 154, 623, 869, 872
HpyCH4III ACNGT 3 cut(s) 328, 349, 895
HpyCH4IV ACGT 1 cut(s) 546
HpyCH4V TGCA 5 cut(s) 19, 353, 566, 728, 767
HpyF10VI GCNNNNNNNGC 6 cut(s) 181, 380, 419, 817, 839, 932
HpyF3I CTNAG 6 cut(s) 299, 318, 493, 592, 829, 942
HpySE526I ACGT 1 cut(s) 546
Hsp92II CATG 6 cut(s) 19, 23, 71, 169, 289, 962
Ksp22I TGATCA 1 cut(s) 480
Kzo9I GATC 2 cut(s) 480, 675
LmnI GCTCC 2 cut(s) 632, 838
Lsp1109I GCAGC 4 cut(s) 137, 168, 386, 622
LweI GCATC 2 cut(s) 658, 922
MaeI CTAG 2 cut(s) 314, 815
MaeII ACGT 1 cut(s) 546
MaeIII GTNAC 4 cut(s) 269, 328, 506, 547
MalI GATC 2 cut(s) 482, 677
MboI GATC 2 cut(s) 480, 675
MboII GAAGA 2 cut(s) 655, 941
MfeI CAATTG 1 cut(s) 521
MhlI GDGCHC 1 cut(s) 568
MlsI TGGCCA 1 cut(s) 462
MluCI AATT 6 cut(s) 116, 256, 521, 578, 718, 975
MluNI TGGCCA 1 cut(s) 462
MlyI GAGTC 6 cut(s) 139, 450, 616, 655, 896, 979
MmeI TCCRAC 1 cut(s) 220
Mox20I TGGCCA 1 cut(s) 462
Mph1103I ATGCAT 1 cut(s) 21
MscI TGGCCA 1 cut(s) 462
MseI TTAA 3 cut(s) 62, 291, 722
MslI CAYNNNNRTG 2 cut(s) 215, 545
Msp20I TGGCCA 1 cut(s) 462
MspI CCGG 2 cut(s) 80, 267
MspR9I CCNGG 4 cut(s) 207, 419, 756, 851
MunI CAATTG 1 cut(s) 521
Mva1269I GAATGC 1 cut(s) 693
MvaI CCWGG 4 cut(s) 207, 419, 756, 851
MwoI GCNNNNNNNGC 6 cut(s) 181, 380, 419, 817, 839, 932
NcoI CCATGG 1 cut(s) 285
NdeII GATC 2 cut(s) 480, 675
NlaIII CATG 6 cut(s) 19, 23, 71, 169, 289, 962
NlaIV GGNNCC 1 cut(s) 84
NmeAIII GCCGAG 1 cut(s) 868
NmuCI GTSAC 4 cut(s) 269, 328, 506, 547
NsiI ATGCAT 1 cut(s) 21
NspI RCATGY 2 cut(s) 23, 71
OliI CACNNNNGTG 2 cut(s) 215, 545
PctI GAATGC 1 cut(s) 693
PkrI GCNGC 5 cut(s) 127, 183, 376, 490, 637
PleI GAGTC 6 cut(s) 138, 449, 616, 654, 896, 979
PmaCI CACGTG 1 cut(s) 547
PmlI CACGTG 1 cut(s) 547
PpsI GAGTC 6 cut(s) 138, 449, 616, 654, 896, 979
Ppu21I YACGTR 1 cut(s) 547
PpuMI RGGWCCY 1 cut(s) 50
Psp5II RGGWCCY 1 cut(s) 50
Psp6I CCWGG 4 cut(s) 205, 417, 754, 849
PspCI CACGTG 1 cut(s) 547
PspGI CCWGG 4 cut(s) 205, 417, 754, 849
PspN4I GGNNCC 1 cut(s) 84
PspPI GGNCC 2 cut(s) 50, 242
PspPPI RGGWCCY 1 cut(s) 50
PsrI GAACNNNNNNTAC 2 cut(s) 839, 871
PstNI CAGNNNCTG 1 cut(s) 380
RseI CAYNNNNRTG 2 cut(s) 215, 545
SaqAI TTAA 3 cut(s) 62, 291, 722
SatI GCNGC 5 cut(s) 126, 182, 375, 489, 636
Sau3AI GATC 2 cut(s) 480, 675
Sau96I GGNCC 2 cut(s) 50, 242
SchI GAGTC 6 cut(s) 139, 450, 616, 655, 896, 979
ScrFI CCNGG 4 cut(s) 207, 419, 756, 851
SduI GDGCHC 1 cut(s) 568
SfaNI GCATC 2 cut(s) 658, 922
SfcI CTRYAG 5 cut(s) 384, 687, 783, 963, 989
SinI GGWCC 2 cut(s) 50, 242
SmiMI CAYNNNNRTG 2 cut(s) 215, 545
SmlI CTYRAG 1 cut(s) 887
SmoI CTYRAG 1 cut(s) 887
SpeI ACTAGT 1 cut(s) 814
Sse9I AATT 6 cut(s) 116, 256, 521, 578, 718, 975
SsiI CCGC 3 cut(s) 489, 498, 515
SspMI CTAG 2 cut(s) 314, 815
StyD4I CCNGG 4 cut(s) 205, 417, 754, 849
StyI CCWWGG 4 cut(s) 285, 698, 837, 921
TaaI ACNGT 3 cut(s) 328, 349, 895
TaiI ACGT 1 cut(s) 549
TaqI TCGA 2 cut(s) 612, 900
TasI AATT 6 cut(s) 116, 256, 521, 578, 718, 975
TauI GCSGC 1 cut(s) 491
Tru1I TTAA 3 cut(s) 62, 291, 722
Tru9I TTAA 3 cut(s) 62, 291, 722
TscAI CASTG 4 cut(s) 217, 385, 774, 828
TseFI GTSAC 4 cut(s) 269, 328, 506, 547
TseI GCWGC 4 cut(s) 125, 181, 374, 635
Tsp45I GTSAC 4 cut(s) 269, 328, 506, 547
TspDTI ATGAA 3 cut(s) 117, 128, 571
TspGWI ACGGA 1 cut(s) 673
TspRI CASTG 4 cut(s) 217, 385, 774, 828
VneI GTGCAC 1 cut(s) 564
VpaK11BI GGWCC 2 cut(s) 50, 242
XagI CCTNNNNNAGG 1 cut(s) 920
XapI RAATTY 2 cut(s) 256, 578
XceI RCATGY 2 cut(s) 23, 71
XspI CTAG 2 cut(s) 314, 815
Zsp2I ATGCAT 1 cut(s) 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.