MD05G1168700.v1.1

Quinone-oxidoreductase homolog, chloroplastic

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
Physical Location & Seq
Reverse (-)
29863248 .. 29866278
3031 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1168700.v1.1.491

Sequence Viewer

Length: 990 bp
ATGGCGTCAAAGCTTATGCATGCGGTACAGTACGACAGCTATGGCGGAGGCGCTTCTGCTTTAAAGCATGTGGAGGCTCCGGTCCCCTCTCCCAAGAAGGGGGAGGTTTTGTTGAAACTGGAAGCAGCTGCTCTAAACCCAGTTGATTGGAAAATTCAGAAGGGCATGCTTCGGCCTTTTTTCCCCCGAAAATTTCCTCACATACCTGTTACTGATGTGGCTGGAGAGGTTGTAGAGGTTGGACAAGGAGTGCAAAAGTTCAAACCGGGGGACAAAGTTGTGACATTTCTGAGCCATGCTAATGGAGGTGGACTGGCTGAGTACACTAAAGCTAGTGAGAACTTGATAGTGTCCAGGCCACCTGAAGTCTCAGCAGCTGAAGGTGCAGGCTTACCTGTTGCTGGCCTCACAGCTCACCAGTGTCTCACGGAATCTGCTGGGATCAAGCTGGACGGAAGCGGCCAGCAAAAGAACATATTGATTACTGCTGCCTCTGGGGGCGTGGGTCAGTATGCAGTCCAACTAGCAAAGCTCGGTAACACGCATGTTACAGCCACGTGTGGAGCTCGTAACATTGAATTTGTCCAGAGCTTAGGGGCAGATGAGGTTCTTGACTACAAGACCCCAGAAGGAGCAGCTCTGACTAGCCCATCTGGTCGGAAATATGATGTTGTGGTCCACTGCGCAACTGGCATCCCCTGGTCAACTTTTGAGCCTAATTTGAGTACCAACGGGAAGGTAATAGACATCACTCCCAGTCCAAGTGCCTTTGCTACTTTTGCACTGAAGAAACTCACATTCTCGAAGAAGCAGCTGGTGCCACTGTTTCTGAATGTCAAGGCTGAGAACTTGGAGTATCTTGTTAAGTTGGTGAAGGAAGGAAAGCTCAAGACGGTAATCGACTCGACGTATTCTCTGAGCAAGGCTGAAGATGCTTGGGCTAGGAGTATGGATGGACACGCGACTGGAAAGATTATTGTCGAGCCTTAA

Protein Analysis

330

Amino Acids

34.82

Weight (kDa)

8.75

Isoelectric Point (pI)

33.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 33 - 119 1.5e-16 Alcohol dehydrogenase GroES-like domain
ADH_zinc_N PF00107 167 - 279 3.2e-09 Zinc-binding dehydrogenase
ADH_zinc_N_2 PF13602 198 - 327 2.1e-23 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000313)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G13010
fragaria_vesca FvH4_2g18240 FvH4_2g18280 FvH4_2g18310 FvH4_2g18320 FvH4_2g18330 FvH4_2g18340 FvH4_2g18350
malus_domestica MD05G1166800.v1.1 MD05G1167200.v1.1 MD05G1167300.v1.1 MD05G1167400.v1.1 MD05G1167600.v1.1 MD05G1168000.v1.1 MD05G1168200.v1.1 MD05G1168400.v1.1 MD05G1168600.v1.1 MD05G1168700.v1.1 MD05G1168800.v1.1 MD10G1156900.v1.1 MD10G1157000.v1.1 MD10G1157100.v1.1 MD10G1157200.v1.1
prunus_persica Prupe.8G195100_v2.0.a1 Prupe.8G195100_v2.0.a1 Prupe.8G195300_v2.0.a1 Prupe.8G195600_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G196000_v2.0.a1 Prupe.8G196000_v2.0.a1
pyrus_communis pycom05g15560 pycom05g15600 pycom05g15610 pycom05g15620 pycom05g15630 pycom10g13550 pycom10g13570
rosa_chinensis RchiOBHm_Chr6g0283611 RchiOBHm_Chr6g0283631 RchiOBHm_Chr6g0283641 RchiOBHm_Chr6g0283661 RchiOBHm_Chr6g0283681 RchiOBHm_Chr6g0283691 RchiOBHm_Chr6g0283701 RchiOBHm_Chr6g0283711 RchiOBHm_Chr6g0283721
rosa_laevigata RLG00000012804 RLG00000012807 RLG00000012811
rosa_multiflora Rmu_co8263921.1_g000001 Rmu_sc0001521.1_g000009 Rmu_sc0002906.1_g000002 Rmu_sc0002906.1_g000011 Rmu_sc0002906.1_g000013 Rmu_sc0005719.1_g000016 Rmu_sc0005719.1_g000022 Rmu_sc0029460.1_g000001
rosa_roxburghii Rroxscaffold_7G00185240 Rroxscaffold_7G00185250 Rroxscaffold_7G00185270 Rroxscaffold_7G00185280 Rroxscaffold_7G00185290 Rroxscaffold_7G00185330 Rroxscaffold_7G00185350
rosa_rugosa Rorug06G0156100 Rorug06G0156300 Rorug06G0156400 Rorug06G0156500 Rorug06G0156600 Rorug06G0156700 Rorug06G0156800 Rorug06G0156900 Rorug06G0157000
rosa_samantha Rh6AG267900 Rh6AG268100 Rh6AG268200 Rh6AG268400 Rh6AG268600 Rh6AG268700 Rh6AG268900 Rh6AG269100 Rh6BG270700 Rh6BG270900 Rh6BG271000 Rh6BG271200 Rh6BG271400 Rh6BG271500 Rh6CG270200 Rh6CG270400 Rh6CG270500 Rh6CG270800 Rh6CG270900 Rh6CG271000 Rh6CG271100 Rh6CG271300 Rh6DG263900 Rh6DG264100 Rh6DG264200 Rh6DG264400 Rh6DG264600 Rh6DG264800 Rh6DG265200
rosa_wichuraiana Rw6G023210 Rw6G023220 Rw6G023230 Rw6G023240 Rw6G023250 Rw6G023260 Rw6G023270 Rw6G023280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 685
AccB1I GGYRCC 1 cut(s) 817
AccII CGCG 1 cut(s) 962
AciI CCGC 3 cut(s) 23, 45, 459
AclWI GGATC 1 cut(s) 449
AcoI YGGCCR 1 cut(s) 460
AcsI RAATTY 3 cut(s) 153, 191, 578
AcuI CTGAAG 4 cut(s) 384, 399, 806, 948
AcvI CACGTG 1 cut(s) 558
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 4 cut(s) 27, 32, 323, 727
AfiI CCNNNNNNNGG 3 cut(s) 98, 99, 401
AflIII ACRYGT 1 cut(s) 557
AgsI TTSAA 3 cut(s) 115, 262, 578
AjnI CCWGG 2 cut(s) 353, 698
Alw21I GWGCWC 1 cut(s) 568
Alw26I GTCTC 2 cut(s) 373, 428
AlwI GGATC 1 cut(s) 449
AlwNI CAGNNNCTG 1 cut(s) 377
AoxI GGCC 4 cut(s) 173, 356, 403, 460
ApeKI GCWGC 6 cut(s) 125, 128, 374, 488, 635, 811
ApoI RAATTY 3 cut(s) 153, 191, 578
AspLEI GCGC 2 cut(s) 53, 686
AspS9I GGNCC 2 cut(s) 82, 676
AsuC2I CCSGG 1 cut(s) 267
AsuHPI GGTGA 2 cut(s) 407, 883
AvaII GGWCC 2 cut(s) 82, 676
BanI GGYRCC 1 cut(s) 817
BanII GRGCYC 1 cut(s) 568
BbrPI CACGTG 1 cut(s) 558
Bbv12I GWGCWC 1 cut(s) 568
BbvI GCAGC 6 cut(s) 115, 137, 386, 475, 647, 823
BccI CCATC 2 cut(s) 658, 947
BciT130I CCWGG 2 cut(s) 355, 700
BcnI CCSGG 1 cut(s) 267
BcoDI GTCTC 2 cut(s) 373, 428
BfaI CTAG 4 cut(s) 333, 524, 645, 942
BfoI RGCGCY 1 cut(s) 54
BisI GCNGC 7 cut(s) 126, 129, 375, 460, 489, 636, 812
BlsI GCNGC 7 cut(s) 127, 130, 376, 461, 490, 637, 813
Bme1390I CCNGG 3 cut(s) 267, 355, 700
Bme18I GGWCC 2 cut(s) 82, 676
BmgT120I GGNCC 2 cut(s) 82, 676
BmiI GGNNCC 3 cut(s) 78, 84, 819
BmrFI CCNGG 3 cut(s) 267, 355, 700
BmrI ACTGGG 2 cut(s) 134, 750
BmsI GCATC 2 cut(s) 702, 922
BmuI ACTGGG 2 cut(s) 134, 750
BpmI CTGGAG 1 cut(s) 243
Bpu10I CCTNAGC 1 cut(s) 592
BpuEI CTTGAG 1 cut(s) 872
BpuMI CCSGG 1 cut(s) 267
BsaAI YACGTR 1 cut(s) 558
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 2 cut(s) 266, 698
BsaWI WCCGGW 1 cut(s) 79
BsaXI ACNNNNNCTCC 4 cut(s) 95, 125, 216, 246
Bsc4I CCNNNNNNNGG 3 cut(s) 98, 99, 401
Bse1I ACTGG 7 cut(s) 123, 140, 318, 418, 694, 756, 970
BseBI CCWGG 2 cut(s) 355, 700
BseDI CCNNGG 2 cut(s) 266, 698
BseGI GGATG 2 cut(s) 693, 958
BseLI CCNNNNNNNGG 3 cut(s) 98, 99, 401
BseMII CTCAG 5 cut(s) 281, 309, 384, 834, 908
BseNI ACTGG 7 cut(s) 123, 140, 318, 418, 694, 756, 970
BseXI GCAGC 6 cut(s) 115, 137, 386, 475, 647, 823
BseYI CCCAGC 1 cut(s) 437
BsgI GTGCAG 1 cut(s) 405
Bsh1236I CGCG 1 cut(s) 962
BshFI GGCC 4 cut(s) 175, 358, 405, 462
BshNI GGYRCC 1 cut(s) 817
BsiHKAI GWGCWC 1 cut(s) 568
BsiSI CCGG 2 cut(s) 80, 266
BslFI GGGAC 2 cut(s) 68, 284
BslI CCNNNNNNNGG 3 cut(s) 98, 99, 401
BsmAI GTCTC 2 cut(s) 373, 428
BsmFI GGGAC 2 cut(s) 68, 284
BsnI GGCC 4 cut(s) 175, 358, 405, 462
Bsp1286I GDGCHC 1 cut(s) 568
Bsp143I GATC 1 cut(s) 441
BspACI CCGC 3 cut(s) 23, 45, 459
BspANI GGCC 4 cut(s) 175, 358, 405, 462
BspCNI CTCAG 5 cut(s) 282, 310, 383, 835, 909
BspFNI CGCG 1 cut(s) 962
BspLI GGNNCC 3 cut(s) 78, 84, 819
BspPI GGATC 1 cut(s) 449
BspT107I GGYRCC 1 cut(s) 817
BsrI ACTGG 7 cut(s) 123, 140, 318, 418, 694, 756, 970
BssECI CCNNGG 2 cut(s) 266, 698
BssMI GATC 1 cut(s) 441
BssNI GRCGYC 1 cut(s) 5
Bst2UI CCWGG 2 cut(s) 355, 700
Bst4CI ACNGT 3 cut(s) 30, 825, 895
BstACI GRCGYC 1 cut(s) 5
BstAPI GCANNNNNTGC 1 cut(s) 817
BstBAI YACGTR 1 cut(s) 558
BstC8I GCNNGC 5 cut(s) 21, 167, 388, 403, 464
BstDEI CTNAG 6 cut(s) 290, 318, 370, 592, 843, 917
BstF5I GGATG 2 cut(s) 693, 958
BstFNI CGCG 1 cut(s) 962
BstH2I RGCGCY 1 cut(s) 54
BstHHI GCGC 2 cut(s) 53, 686
BstKTI GATC 1 cut(s) 444
BstMAI GTCTC 2 cut(s) 373, 428
BstMBI GATC 1 cut(s) 441
BstMWI GCNNNNNNNGC 5 cut(s) 383, 690, 779, 817, 932
BstNI CCWGG 2 cut(s) 355, 700
BstNSI RCATGY 4 cut(s) 23, 71, 169, 548
BstSCI CCNGG 3 cut(s) 265, 353, 698
BstUI CGCG 1 cut(s) 962
BstV1I GCAGC 6 cut(s) 115, 137, 386, 475, 647, 823
BstXI CCANNNNNNTGG 2 cut(s) 147, 302
BsuRI GGCC 4 cut(s) 175, 358, 405, 462
BtsCI GGATG 2 cut(s) 693, 958
BtsI GCAGTG 1 cut(s) 679
BtsIMutI CAGTG 4 cut(s) 425, 679, 782, 821
Cac8I GCNNGC 5 cut(s) 21, 167, 388, 403, 464
CaiI CAGNNNCTG 1 cut(s) 377
CfoI GCGC 2 cut(s) 53, 686
Cfr13I GGNCC 2 cut(s) 82, 676
Csp6I GTAC 4 cut(s) 26, 31, 322, 726
CviAII CATG 5 cut(s) 20, 68, 166, 296, 545
CviQI GTAC 4 cut(s) 26, 31, 322, 726
DdeI CTNAG 6 cut(s) 290, 318, 370, 592, 843, 917
DpnI GATC 1 cut(s) 443
DpnII GATC 1 cut(s) 441
DraI TTTAAA 1 cut(s) 63
EaeI YGGCCR 1 cut(s) 460
EciI GGCGGA 1 cut(s) 60
Ecl136II GAGCTC 1 cut(s) 566
Eco24I GRGCYC 1 cut(s) 568
Eco47I GGWCC 2 cut(s) 82, 676
Eco53kI GAGCTC 1 cut(s) 566
Eco57I CTGAAG 4 cut(s) 384, 399, 806, 948
Eco72I CACGTG 1 cut(s) 558
EcoICRI GAGCTC 1 cut(s) 566
EcoRII CCWGG 2 cut(s) 353, 698
EcoT22I ATGCAT 1 cut(s) 21
EcoT38I GRGCYC 1 cut(s) 568
FaeI CATG 5 cut(s) 23, 71, 169, 299, 548
FaqI GGGAC 2 cut(s) 68, 284
FatI CATG 5 cut(s) 19, 67, 165, 295, 544
Fnu4HI GCNGC 7 cut(s) 126, 129, 375, 460, 489, 636, 812
FokI GGATG 2 cut(s) 680, 965
FriOI GRGCYC 1 cut(s) 568
Fsp4HI GCNGC 7 cut(s) 126, 129, 375, 460, 489, 636, 812
FspBI CTAG 4 cut(s) 333, 524, 645, 942
FspI TGCGCA 1 cut(s) 685
GlaI GCGC 2 cut(s) 52, 685
GluI GCNGC 7 cut(s) 126, 129, 375, 460, 489, 636, 812
GsaI CCCAGC 1 cut(s) 441
GsuI CTGGAG 1 cut(s) 243
HaeII RGCGCY 1 cut(s) 54
HaeIII GGCC 4 cut(s) 175, 358, 405, 462
HapII CCGG 2 cut(s) 80, 266
HhaI GCGC 2 cut(s) 53, 686
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 5 cut(s) 23, 71, 169, 299, 548
Hin6I GCGC 2 cut(s) 51, 684
HinP1I GCGC 2 cut(s) 51, 684
HincII GTYRAC 1 cut(s) 705
HindII GTYRAC 1 cut(s) 705
HindIII AAGCTT 1 cut(s) 11
HinfI GANTC 2 cut(s) 431, 902
HpaII CCGG 2 cut(s) 80, 266
HphI GGTGA 2 cut(s) 407, 883
Hpy166II GTNNAC 4 cut(s) 311, 324, 679, 705
Hpy188I TCNGA 6 cut(s) 159, 291, 642, 660, 831, 918
Hpy188III TCNNGA 4 cut(s) 586, 611, 802, 889
Hpy8I GTNNAC 4 cut(s) 311, 324, 679, 705
Hpy99I CGWCG 1 cut(s) 910
HpyAV CCTTC 7 cut(s) 91, 154, 374, 623, 730, 868, 872
HpyCH4III ACNGT 3 cut(s) 30, 825, 895
HpyCH4IV ACGT 2 cut(s) 557, 908
HpyCH4V TGCA 5 cut(s) 19, 253, 386, 515, 782
HpyF10VI GCNNNNNNNGC 5 cut(s) 383, 690, 779, 817, 932
HpyF3I CTNAG 6 cut(s) 290, 318, 370, 592, 843, 917
HpySE526I ACGT 2 cut(s) 557, 908
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 5 cut(s) 23, 71, 169, 299, 548
HspAI GCGC 2 cut(s) 51, 684
Kzo9I GATC 1 cut(s) 441
LmnI GCTCC 3 cut(s) 82, 563, 632
Lsp1109I GCAGC 6 cut(s) 115, 137, 386, 475, 647, 823
LweI GCATC 2 cut(s) 702, 922
MaeI CTAG 4 cut(s) 333, 524, 645, 942
MaeII ACGT 2 cut(s) 557, 908
MaeIII GTNAC 5 cut(s) 208, 280, 536, 547, 569
MalI GATC 1 cut(s) 443
MboI GATC 1 cut(s) 441
MboII GAAGA 3 cut(s) 799, 817, 941
MhlI GDGCHC 1 cut(s) 568
MluCI AATT 4 cut(s) 153, 191, 578, 718
MlyI GAGTC 1 cut(s) 896
MmeI TCCRAC 3 cut(s) 220, 544, 638
Mph1103I ATGCAT 1 cut(s) 21
MseI TTAA 3 cut(s) 62, 864, 988
MslI CAYNNNNRTG 1 cut(s) 300
MspA1I CMGCKG 3 cut(s) 128, 377, 814
MspI CCGG 2 cut(s) 80, 266
MspR9I CCNGG 3 cut(s) 267, 355, 700
MvaI CCWGG 2 cut(s) 355, 700
MvnI CGCG 1 cut(s) 962
MwoI GCNNNNNNNGC 5 cut(s) 383, 690, 779, 817, 932
NciI CCSGG 1 cut(s) 267
NdeII GATC 1 cut(s) 441
NlaIII CATG 5 cut(s) 23, 71, 169, 299, 548
NlaIV GGNNCC 3 cut(s) 78, 84, 819
NmuCI GTSAC 1 cut(s) 280
NsbI TGCGCA 1 cut(s) 685
NsiI ATGCAT 1 cut(s) 21
NspI RCATGY 4 cut(s) 23, 71, 169, 548
PaeI GCATGC 2 cut(s) 23, 169
PfeI GAWTC 1 cut(s) 431
PkrI GCNGC 7 cut(s) 127, 130, 376, 461, 490, 637, 813
PleI GAGTC 1 cut(s) 896
PmaCI CACGTG 1 cut(s) 558
PmlI CACGTG 1 cut(s) 558
PpsI GAGTC 1 cut(s) 896
Ppu21I YACGTR 1 cut(s) 558
Psp124BI GAGCTC 1 cut(s) 568
Psp6I CCWGG 2 cut(s) 353, 698
PspCI CACGTG 1 cut(s) 558
PspFI CCCAGC 1 cut(s) 437
PspGI CCWGG 2 cut(s) 353, 698
PspN4I GGNNCC 3 cut(s) 78, 84, 819
PspPI GGNCC 2 cut(s) 82, 676
PstNI CAGNNNCTG 1 cut(s) 377
PvuII CAGCTG 3 cut(s) 128, 377, 814
RsaI GTAC 4 cut(s) 27, 32, 323, 727
RsaNI GTAC 4 cut(s) 26, 31, 322, 726
RseI CAYNNNNRTG 1 cut(s) 300
SacI GAGCTC 1 cut(s) 568
SaqAI TTAA 3 cut(s) 62, 864, 988
SatI GCNGC 7 cut(s) 126, 129, 375, 460, 489, 636, 812
Sau3AI GATC 1 cut(s) 441
Sau96I GGNCC 2 cut(s) 82, 676
SchI GAGTC 1 cut(s) 896
ScrFI CCNGG 3 cut(s) 267, 355, 700
SduI GDGCHC 1 cut(s) 568
SfaNI GCATC 2 cut(s) 702, 922
SinI GGWCC 2 cut(s) 82, 676
SmiMI CAYNNNNRTG 1 cut(s) 300
SmlI CTYRAG 1 cut(s) 887
SmoI CTYRAG 1 cut(s) 887
SphI GCATGC 2 cut(s) 23, 169
Sse9I AATT 4 cut(s) 153, 191, 578, 718
SsiI CCGC 3 cut(s) 23, 45, 459
SspMI CTAG 4 cut(s) 333, 524, 645, 942
SstI GAGCTC 1 cut(s) 568
StyD4I CCNGG 3 cut(s) 265, 353, 698
TaaI ACNGT 3 cut(s) 30, 825, 895
TaiI ACGT 2 cut(s) 560, 911
TaqI TCGA 4 cut(s) 803, 900, 905, 981
TasI AATT 4 cut(s) 153, 191, 578, 718
TatI WGTACW 1 cut(s) 321
TauI GCSGC 1 cut(s) 462
TfiI GAWTC 1 cut(s) 431
Tru1I TTAA 3 cut(s) 62, 864, 988
Tru9I TTAA 3 cut(s) 62, 864, 988
TscAI CASTG 4 cut(s) 425, 686, 789, 828
TseFI GTSAC 1 cut(s) 280
TseI GCWGC 6 cut(s) 125, 128, 374, 488, 635, 811
Tsp45I GTSAC 1 cut(s) 280
TspGWI ACGGA 2 cut(s) 443, 468
TspRI CASTG 4 cut(s) 425, 686, 789, 828
VpaK11BI GGWCC 2 cut(s) 82, 676
XapI RAATTY 3 cut(s) 153, 191, 578
XceI RCATGY 4 cut(s) 23, 71, 169, 548
XcmI CCANNNNNNNNNTGG 1 cut(s) 686
XspI CTAG 4 cut(s) 333, 524, 645, 942
Zsp2I ATGCAT 1 cut(s) 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.