MD05G1167600.v1.1

quinone-oxidoreductase homolog, chloroplastic

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
Physical Location & Seq
Reverse (-)
29783033 .. 29785905
2873 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1167600.v1.1.491

Sequence Viewer

Length: 990 bp
ATGGCCAATGAGACCATGCACGCTGTTCAGTACGACAACTATGGCGGCGGAACTTCTGGTTTAAAGCATGTTGAAGTTCCGATTCCAAATCCGAAAAAAGATGAGGTGTTGCTGAAATTGGAGGCAACTAGTCTAAACGCAATTGATTGGAAAGCTCAGAAAGGCATGCTCTGGCCTTTGTTGCCTCGCAGGTTTCCGTACATACCTGGTATTGATGTGGCAGGAGAGGTTGTAAAGGTAGGACCTGGAGTAAAAAAATTCAAACCTGGTGACAAAGTTGTCGGGAAGGTTAACACTCTTACTGGAGGTGGACTAGCTGAATTTGCCGTGACAATGGAGAGTTTAACTGTTGCAAGGCCACCGGAAGTTTCAGCAGCCACCGCTGTAGGATTACCCGTTGCTGGTCTCACAGCTCACCAGGCTCTTACACAAACTGCAGGGATCAAGCTTGATGGAAGTGGTCAGCAAGCAAACATCCTGATCACAGCTGCTTCAGGTGGTGTAGGTCTCTATGCGGTTCAGTTGGCAAAGCTCGGAAATACTCATATTACAGCCACTTGTGGTGCCCGCAACATTGAACTGGTCAAAAGCCTAGGGGCTGATGAGGTTATTGACTACAAGACCCCAGAAGGTGCAGCTCTTAGGAGTCCATCTGGTCGAAAATATGATGTTGTGATCCACTGTGCAACATGCATTCCTTGGTCAACTTTTGAGCCTAATTTGAGTGCGAACGGTAAGGTAATAGATGTTACTCCCACCCCCAGCTCTCTGTTTAGCGTTGCACTGAAGAAACTTACCTTTTCTAAGAAGCAACTGGTGCCACTGTTCTTATTTCCCATGGCTGATAACCTTGAGTATCTTATTAAGTTGGTGAAAGAAGGGAAGCTGAAGACTATAATTGACTCAAAGTATCCCCTGACCAAGGCGGAGGACGCTTGGGATAGGATCAGCGATGGCCATGCTACCGGAAAGATAATTGTGGAGCCTTAG

Protein Analysis

330

Amino Acids

34.95

Weight (kDa)

8.9

Isoelectric Point (pI)

27.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 33 - 117 8.6e-16 Alcohol dehydrogenase GroES-like domain
ADH_zinc_N PF00107 167 - 230 5.2e-10 Zinc-binding dehydrogenase
ADH_zinc_N_2 PF13602 198 - 327 1.7e-23 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000313)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G13010
fragaria_vesca FvH4_2g18240 FvH4_2g18280 FvH4_2g18310 FvH4_2g18320 FvH4_2g18330 FvH4_2g18340 FvH4_2g18350
malus_domestica MD05G1166800.v1.1 MD05G1167200.v1.1 MD05G1167300.v1.1 MD05G1167400.v1.1 MD05G1167600.v1.1 MD05G1168000.v1.1 MD05G1168200.v1.1 MD05G1168400.v1.1 MD05G1168600.v1.1 MD05G1168700.v1.1 MD05G1168800.v1.1 MD10G1156900.v1.1 MD10G1157000.v1.1 MD10G1157100.v1.1 MD10G1157200.v1.1
prunus_persica Prupe.8G195100_v2.0.a1 Prupe.8G195100_v2.0.a1 Prupe.8G195300_v2.0.a1 Prupe.8G195600_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G196000_v2.0.a1 Prupe.8G196000_v2.0.a1
pyrus_communis pycom05g15560 pycom05g15600 pycom05g15610 pycom05g15620 pycom05g15630 pycom10g13550 pycom10g13570
rosa_chinensis RchiOBHm_Chr6g0283611 RchiOBHm_Chr6g0283631 RchiOBHm_Chr6g0283641 RchiOBHm_Chr6g0283661 RchiOBHm_Chr6g0283681 RchiOBHm_Chr6g0283691 RchiOBHm_Chr6g0283701 RchiOBHm_Chr6g0283711 RchiOBHm_Chr6g0283721
rosa_laevigata RLG00000012804 RLG00000012807 RLG00000012811
rosa_multiflora Rmu_co8263921.1_g000001 Rmu_sc0001521.1_g000009 Rmu_sc0002906.1_g000002 Rmu_sc0002906.1_g000011 Rmu_sc0002906.1_g000013 Rmu_sc0005719.1_g000016 Rmu_sc0005719.1_g000022 Rmu_sc0029460.1_g000001
rosa_roxburghii Rroxscaffold_7G00185240 Rroxscaffold_7G00185250 Rroxscaffold_7G00185270 Rroxscaffold_7G00185280 Rroxscaffold_7G00185290 Rroxscaffold_7G00185330 Rroxscaffold_7G00185350
rosa_rugosa Rorug06G0156100 Rorug06G0156300 Rorug06G0156400 Rorug06G0156500 Rorug06G0156600 Rorug06G0156700 Rorug06G0156800 Rorug06G0156900 Rorug06G0157000
rosa_samantha Rh6AG267900 Rh6AG268100 Rh6AG268200 Rh6AG268400 Rh6AG268600 Rh6AG268700 Rh6AG268900 Rh6AG269100 Rh6BG270700 Rh6BG270900 Rh6BG271000 Rh6BG271200 Rh6BG271400 Rh6BG271500 Rh6CG270200 Rh6CG270400 Rh6CG270500 Rh6CG270800 Rh6CG270900 Rh6CG271000 Rh6CG271100 Rh6CG271300 Rh6DG263900 Rh6DG264100 Rh6DG264200 Rh6DG264400 Rh6DG264600 Rh6DG264800 Rh6DG265200
rosa_wichuraiana Rw6G023210 Rw6G023220 Rw6G023230 Rw6G023240 Rw6G023250 Rw6G023260 Rw6G023270 Rw6G023280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 278
Acc36I ACCTGC 1 cut(s) 180
AccB1I GGYRCC 2 cut(s) 563, 817
AciI CCGC 6 cut(s) 45, 48, 381, 515, 568, 926
AclWI GGATC 3 cut(s) 449, 670, 953
AcoI YGGCCR 2 cut(s) 3, 955
AcsI RAATTY 2 cut(s) 257, 320
AcuI CTGAAG 3 cut(s) 477, 806, 908
AfaI GTAC 2 cut(s) 32, 200
AfiI CCNNNNNNNGG 2 cut(s) 401, 922
AgsI TTSAA 3 cut(s) 74, 262, 578
AhlI ACTAGT 1 cut(s) 128
AjnI CCWGG 4 cut(s) 205, 244, 265, 417
AluBI AGCT 9 cut(s) 155, 317, 413, 448, 488, 532, 638, 765, 886
AluI AGCT 9 cut(s) 155, 317, 413, 448, 488, 532, 638, 765, 886
Alw26I GTCTC 3 cut(s) 5, 410, 512
AlwI GGATC 3 cut(s) 449, 670, 953
AoxI GGCC 4 cut(s) 3, 173, 356, 955
ApeKI GCWGC 3 cut(s) 374, 488, 635
ApoI RAATTY 2 cut(s) 257, 320
AspA2I CCTAGG 1 cut(s) 592
AspS9I GGNCC 1 cut(s) 242
AsuHPI GGTGA 3 cut(s) 281, 407, 883
AvaII GGWCC 1 cut(s) 242
AvrII CCTAGG 1 cut(s) 592
BaeGI GKGCMC 1 cut(s) 568
BalI TGGCCA 2 cut(s) 5, 957
BanI GGYRCC 2 cut(s) 563, 817
BbsI GAAGAC 1 cut(s) 896
BbvI GCAGC 3 cut(s) 386, 475, 647
BccI CCATC 3 cut(s) 446, 658, 947
BceAI ACGGC 1 cut(s) 311
BcgI CGANNNNNNTGC 2 cut(s) 941, 975
BciT130I CCWGG 4 cut(s) 207, 246, 267, 419
BciVI GTATCC 1 cut(s) 921
BclI TGATCA 1 cut(s) 480
BcoDI GTCTC 3 cut(s) 5, 410, 512
BcuI ACTAGT 1 cut(s) 128
BfaI CTAG 3 cut(s) 129, 314, 593
BfmI CTRYAG 2 cut(s) 384, 435
BfuAI ACCTGC 1 cut(s) 180
BfuI GTATCC 1 cut(s) 921
BisI GCNGC 4 cut(s) 46, 375, 489, 636
BlnI CCTAGG 1 cut(s) 592
BlsI GCNGC 4 cut(s) 47, 376, 490, 637
Bme1390I CCNGG 4 cut(s) 207, 246, 267, 419
Bme18I GGWCC 1 cut(s) 242
BmgT120I GGNCC 1 cut(s) 242
BmiI GGNNCC 3 cut(s) 565, 819, 984
BmrFI CCNGG 4 cut(s) 207, 246, 267, 419
BpiI GAAGAC 1 cut(s) 896
BpmI CTGGAG 2 cut(s) 267, 324
BpuEI CTTGAG 1 cut(s) 872
BsaI GGTCTC 3 cut(s) 5, 410, 512
BsaJI CCNNGG 4 cut(s) 592, 698, 837, 921
BsaWI WCCGGW 2 cut(s) 361, 965
BsaXI ACNNNNNCTCC 2 cut(s) 216, 246
Bsc4I CCNNNNNNNGG 2 cut(s) 401, 922
Bse1I ACTGG 3 cut(s) 307, 585, 819
BseBI CCWGG 4 cut(s) 207, 246, 267, 419
BseDI CCNNGG 4 cut(s) 592, 698, 837, 921
BseGI GGATG 1 cut(s) 474
BseLI CCNNNNNNNGG 2 cut(s) 401, 922
BseMII CTCAG 1 cut(s) 170
BseNI ACTGG 3 cut(s) 307, 585, 819
BseSI GKGCMC 1 cut(s) 568
BseXI GCAGC 3 cut(s) 386, 475, 647
BseYI CCCAGC 1 cut(s) 761
BsgI GTGCAG 1 cut(s) 654
BshFI GGCC 4 cut(s) 5, 175, 358, 957
BshNI GGYRCC 2 cut(s) 563, 817
BsiSI CCGG 2 cut(s) 362, 966
BslI CCNNNNNNNGG 2 cut(s) 401, 922
BsmAI GTCTC 3 cut(s) 5, 410, 512
BsmI GAATGC 1 cut(s) 693
BsnI GGCC 4 cut(s) 5, 175, 358, 957
Bso31I GGTCTC 3 cut(s) 5, 410, 512
Bsp1286I GDGCHC 1 cut(s) 568
Bsp143I GATC 4 cut(s) 441, 480, 675, 945
Bsp19I CCATGG 1 cut(s) 837
BspACI CCGC 6 cut(s) 45, 48, 381, 515, 568, 926
BspANI GGCC 4 cut(s) 5, 175, 358, 957
BspCNI CTCAG 1 cut(s) 169
BspLI GGNNCC 3 cut(s) 565, 819, 984
BspMAI CTGCAG 1 cut(s) 439
BspMI ACCTGC 1 cut(s) 180
BspPI GGATC 3 cut(s) 449, 670, 953
BspT107I GGYRCC 2 cut(s) 563, 817
BspTNI GGTCTC 3 cut(s) 5, 410, 512
BsrI ACTGG 3 cut(s) 307, 585, 819
BssECI CCNNGG 4 cut(s) 592, 698, 837, 921
BssMI GATC 4 cut(s) 441, 480, 675, 945
BssT1I CCWWGG 4 cut(s) 592, 698, 837, 921
Bst2UI CCWGG 4 cut(s) 207, 246, 267, 419
Bst4CI ACNGT 4 cut(s) 349, 683, 734, 825
BstAPI GCANNNNNTGC 1 cut(s) 817
BstC8I GCNNGC 4 cut(s) 21, 167, 468, 568
BstDEI CTNAG 4 cut(s) 156, 641, 804, 987
BstDSI CCRYGG 1 cut(s) 837
BstENI CCTNNNNNAGG 1 cut(s) 920
BstF5I GGATG 1 cut(s) 474
BstKTI GATC 4 cut(s) 444, 483, 678, 948
BstMAI GTCTC 3 cut(s) 5, 410, 512
BstMBI GATC 4 cut(s) 441, 480, 675, 945
BstMWI GCNNNNNNNGC 6 cut(s) 181, 323, 380, 419, 817, 932
BstNI CCWGG 4 cut(s) 207, 246, 267, 419
BstNSI RCATGY 3 cut(s) 71, 169, 693
BstSCI CCNGG 4 cut(s) 205, 244, 265, 417
BstSFI CTRYAG 2 cut(s) 384, 435
BstSLI GKGCMC 1 cut(s) 568
BstV1I GCAGC 3 cut(s) 386, 475, 647
BstV2I GAAGAC 1 cut(s) 896
BsuI GTATCC 1 cut(s) 921
BsuRI GGCC 4 cut(s) 5, 175, 358, 957
BtgI CCRYGG 1 cut(s) 837
BtgZI GCGATG 1 cut(s) 966
BtsCI GGATG 1 cut(s) 474
BtsIMutI CAGTG 3 cut(s) 679, 782, 821
BveI ACCTGC 1 cut(s) 180
Cac8I GCNNGC 4 cut(s) 21, 167, 468, 568
Cfr13I GGNCC 1 cut(s) 242
CseI GACGC 1 cut(s) 941
CsiI ACCWGGT 2 cut(s) 205, 265
Csp6I GTAC 2 cut(s) 31, 199
CviAII CATG 6 cut(s) 16, 68, 166, 690, 838, 959
CviQI GTAC 2 cut(s) 31, 199
DdeI CTNAG 4 cut(s) 156, 641, 804, 987
DpnI GATC 4 cut(s) 443, 482, 677, 947
DpnII GATC 4 cut(s) 441, 480, 675, 945
DraI TTTAAA 1 cut(s) 63
DrdI GACNNNNNNGTC 1 cut(s) 278
DseDI GACNNNNNNGTC 1 cut(s) 278
EaeI YGGCCR 2 cut(s) 3, 955
EciI GGCGGA 2 cut(s) 63, 941
Eco130I CCWWGG 4 cut(s) 592, 698, 837, 921
Eco31I GGTCTC 3 cut(s) 5, 410, 512
Eco47I GGWCC 1 cut(s) 242
Eco57I CTGAAG 3 cut(s) 477, 806, 908
EcoNI CCTNNNNNAGG 1 cut(s) 920
EcoO109I RGGNCCY 1 cut(s) 242
EcoRII CCWGG 4 cut(s) 205, 244, 265, 417
EcoT14I CCWWGG 4 cut(s) 592, 698, 837, 921
EcoT22I ATGCAT 1 cut(s) 695
ErhI CCWWGG 4 cut(s) 592, 698, 837, 921
FaeI CATG 6 cut(s) 19, 71, 169, 693, 841, 962
FatI CATG 6 cut(s) 15, 67, 165, 689, 837, 958
FauI CCCGC 1 cut(s) 575
FbaI TGATCA 1 cut(s) 480
Fnu4HI GCNGC 4 cut(s) 46, 375, 489, 636
FokI GGATG 1 cut(s) 461
Fsp4HI GCNGC 4 cut(s) 46, 375, 489, 636
FspBI CTAG 3 cut(s) 129, 314, 593
GluI GCNGC 4 cut(s) 46, 375, 489, 636
GsaI CCCAGC 1 cut(s) 765
GsuI CTGGAG 2 cut(s) 267, 324
HaeIII GGCC 4 cut(s) 5, 175, 358, 957
HapII CCGG 2 cut(s) 362, 966
HgaI GACGC 1 cut(s) 941
Hin1II CATG 6 cut(s) 19, 71, 169, 693, 841, 962
HincII GTYRAC 2 cut(s) 292, 705
HindII GTYRAC 2 cut(s) 292, 705
HindIII AAGCTT 1 cut(s) 446
HinfI GANTC 3 cut(s) 82, 646, 902
HpaI GTTAAC 1 cut(s) 292
HpaII CCGG 2 cut(s) 362, 966
HphI GGTGA 3 cut(s) 281, 407, 883
Hpy166II GTNNAC 3 cut(s) 292, 311, 705
Hpy188I TCNGA 4 cut(s) 81, 93, 159, 536
Hpy188III TCNNGA 2 cut(s) 283, 478
Hpy8I GTNNAC 3 cut(s) 292, 311, 705
HpyAV CCTTC 3 cut(s) 280, 623, 872
HpyCH4III ACNGT 4 cut(s) 349, 683, 734, 825
HpyCH4V TGCA 7 cut(s) 19, 353, 437, 635, 686, 693, 782
HpyF10VI GCNNNNNNNGC 6 cut(s) 181, 323, 380, 419, 817, 932
HpyF3I CTNAG 4 cut(s) 156, 641, 804, 987
Hsp92II CATG 6 cut(s) 19, 71, 169, 693, 841, 962
Ksp22I TGATCA 1 cut(s) 480
KspAI GTTAAC 1 cut(s) 292
Kzo9I GATC 4 cut(s) 441, 480, 675, 945
LmnI GCTCC 1 cut(s) 982
Lsp1109I GCAGC 3 cut(s) 386, 475, 647
MabI ACCWGGT 2 cut(s) 205, 265
MaeI CTAG 3 cut(s) 129, 314, 593
MaeIII GTNAC 3 cut(s) 269, 328, 748
MalI GATC 4 cut(s) 443, 482, 677, 947
MboI GATC 4 cut(s) 441, 480, 675, 945
MboII GAAGA 2 cut(s) 799, 901
MfeI CAATTG 1 cut(s) 141
MhlI GDGCHC 1 cut(s) 568
MlsI TGGCCA 2 cut(s) 5, 957
MluCI AATT 7 cut(s) 116, 141, 257, 320, 718, 897, 975
MluNI TGGCCA 2 cut(s) 5, 957
MlyI GAGTC 2 cut(s) 655, 896
MnlI CCTC 7 cut(s) 97, 115, 195, 220, 299, 598, 922
Mox20I TGGCCA 2 cut(s) 5, 957
Mph1103I ATGCAT 1 cut(s) 695
MscI TGGCCA 2 cut(s) 5, 957
MseI TTAA 4 cut(s) 62, 291, 344, 864
Msp20I TGGCCA 2 cut(s) 5, 957
MspA1I CMGCKG 2 cut(s) 383, 488
MspI CCGG 2 cut(s) 362, 966
MspR9I CCNGG 4 cut(s) 207, 246, 267, 419
MunI CAATTG 1 cut(s) 141
Mva1269I GAATGC 1 cut(s) 693
MvaI CCWGG 4 cut(s) 207, 246, 267, 419
MwoI GCNNNNNNNGC 6 cut(s) 181, 323, 380, 419, 817, 932
NcoI CCATGG 1 cut(s) 837
NdeII GATC 4 cut(s) 441, 480, 675, 945
NlaIII CATG 6 cut(s) 19, 71, 169, 693, 841, 962
NlaIV GGNNCC 3 cut(s) 565, 819, 984
NmuCI GTSAC 2 cut(s) 269, 328
NsiI ATGCAT 1 cut(s) 695
NspI RCATGY 3 cut(s) 71, 169, 693
PaeI GCATGC 1 cut(s) 169
PctI GAATGC 1 cut(s) 693
PfeI GAWTC 1 cut(s) 82
PkrI GCNGC 4 cut(s) 47, 376, 490, 637
PleI GAGTC 2 cut(s) 654, 896
PpsI GAGTC 2 cut(s) 654, 896
PpuMI RGGWCCY 1 cut(s) 242
Psp5II RGGWCCY 1 cut(s) 242
Psp6I CCWGG 4 cut(s) 205, 244, 265, 417
PspFI CCCAGC 1 cut(s) 761
PspGI CCWGG 4 cut(s) 205, 244, 265, 417
PspN4I GGNNCC 3 cut(s) 565, 819, 984
PspPI GGNCC 1 cut(s) 242
PspPPI RGGWCCY 1 cut(s) 242
PstI CTGCAG 1 cut(s) 439
PvuII CAGCTG 1 cut(s) 488
RsaI GTAC 2 cut(s) 32, 200
RsaNI GTAC 2 cut(s) 31, 199
SaqAI TTAA 4 cut(s) 62, 291, 344, 864
SatI GCNGC 4 cut(s) 46, 375, 489, 636
Sau3AI GATC 4 cut(s) 441, 480, 675, 945
Sau96I GGNCC 1 cut(s) 242
SchI GAGTC 2 cut(s) 655, 896
ScrFI CCNGG 4 cut(s) 207, 246, 267, 419
SduI GDGCHC 1 cut(s) 568
SexAI ACCWGGT 2 cut(s) 205, 265
SfcI CTRYAG 2 cut(s) 384, 435
SinI GGWCC 1 cut(s) 242
SmlI CTYRAG 1 cut(s) 851
SmoI CTYRAG 1 cut(s) 851
SpeI ACTAGT 1 cut(s) 128
SphI GCATGC 1 cut(s) 169
Sse9I AATT 7 cut(s) 116, 141, 257, 320, 718, 897, 975
SsiI CCGC 6 cut(s) 45, 48, 381, 515, 568, 926
SspMI CTAG 3 cut(s) 129, 314, 593
StyD4I CCNGG 4 cut(s) 205, 244, 265, 417
StyI CCWWGG 4 cut(s) 592, 698, 837, 921
TaaI ACNGT 4 cut(s) 349, 683, 734, 825
TaqI TCGA 1 cut(s) 658
TasI AATT 7 cut(s) 116, 141, 257, 320, 718, 897, 975
TauI GCSGC 1 cut(s) 48
TfiI GAWTC 1 cut(s) 82
Tru1I TTAA 4 cut(s) 62, 291, 344, 864
Tru9I TTAA 4 cut(s) 62, 291, 344, 864
TscAI CASTG 3 cut(s) 686, 789, 828
TseFI GTSAC 2 cut(s) 269, 328
TseI GCWGC 3 cut(s) 374, 488, 635
Tsp45I GTSAC 2 cut(s) 269, 328
TspGWI ACGGA 1 cut(s) 186
TspRI CASTG 3 cut(s) 686, 789, 828
VpaK11BI GGWCC 1 cut(s) 242
XagI CCTNNNNNAGG 1 cut(s) 920
XapI RAATTY 2 cut(s) 257, 320
XceI RCATGY 3 cut(s) 71, 169, 693
XmaJI CCTAGG 1 cut(s) 592
XspI CTAG 3 cut(s) 129, 314, 593
Zsp2I ATGCAT 1 cut(s) 695
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.