Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0000313

Physical Location & Seq

Genomic Coordinates Reverse (-)

24741274 .. 24748090

Gene Structure 6817 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00185350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGTGTAATCTTCAACTCTTCAGGTTCCCAGAGTATGGCAGAAGTGGCTGCAAGCTTATGCATGCTGTTCAGTATGAAAACTATGGTGGAGGGCTTTCTGGTTTGAAGCATGTAGAGATTCCAATCCCCAGTCCTAAGAGAGATGAGGTTTTAGTGAAATTAGAAGCAGCTAGCCTAAATCCAGCTGATTGGAAAATTCAGAAAGGCACGCTGCGTCCTCTTGTTCCACGCAAATTCCCTTTTATACCTGGATTTGATGTGGCTGGAGAGATTGTAGAGGTTGGAGAAAGAGTTAAAAAGTTCAAAGCCAGTGATAAAGTTGTGGCAGTGCTCCACCTTTTGGATGGAGGTGGACTGGCTGAGTTTGCTACAGCTAGTGAGAAATTGACAGTTGCTAGGCCCCAAGAAGTTTCAGCAGCTGAAGGTGCAGGCTTACCTACTTGTGGTCTTACAGCTCACCAGGCTCTAACACAAGCTGGAGAGATCGAGCTTGATGGACCTGGCCAGCTGAAGAGCGTACTCATTACTGGTGCTTCTGGTGGTGTTGGCCATTATGCAGTCCAACTAGCTAAGCTGGCGAACGCTCATGTGACAGTGACTTGTGGAGCTCGTAAGATCGAATTTGTCAAGAGATTGGGGGCTGATGAAGTTCTTGACTACAGTACCCCAGATGGGGCATCTTTAAGGAGTACATCTGGTCGAAAGTATGATGTGGTAATTCACTGTGCACCGATTACCATTCCATGGTCAATTTTTGAGCCAAATCTGACTCCTAAACCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N_2

Protein Analysis

260

Amino Acids

27.76

Weight (kDa)

8.22

Isoelectric Point (pI)

32.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	47 - 132	1.3e-15	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	181 - 243	2.7e-12	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13010
fragaria_vesca	FvH4_2g18240 FvH4_2g18280 FvH4_2g18310 FvH4_2g18320 FvH4_2g18330 FvH4_2g18340 FvH4_2g18350
malus_domestica	MD05G1166800.v1.1 MD05G1167200.v1.1 MD05G1167300.v1.1 MD05G1167400.v1.1 MD05G1167600.v1.1 MD05G1168000.v1.1 MD05G1168200.v1.1 MD05G1168400.v1.1 MD05G1168600.v1.1 MD05G1168700.v1.1 MD05G1168800.v1.1 MD10G1156900.v1.1 MD10G1157000.v1.1 MD10G1157100.v1.1 MD10G1157200.v1.1
prunus_persica	Prupe.8G195100_v2.0.a1 Prupe.8G195100_v2.0.a1 Prupe.8G195300_v2.0.a1 Prupe.8G195600_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G196000_v2.0.a1 Prupe.8G196000_v2.0.a1
pyrus_communis	pycom05g15560 pycom05g15600 pycom05g15610 pycom05g15620 pycom05g15630 pycom10g13550 pycom10g13570
rosa_chinensis	RchiOBHm_Chr6g0283611 RchiOBHm_Chr6g0283631 RchiOBHm_Chr6g0283641 RchiOBHm_Chr6g0283661 RchiOBHm_Chr6g0283681 RchiOBHm_Chr6g0283691 RchiOBHm_Chr6g0283701 RchiOBHm_Chr6g0283711 RchiOBHm_Chr6g0283721
rosa_laevigata	RLG00000012804 RLG00000012807 RLG00000012811
rosa_multiflora	Rmu_co8263921.1_g000001 Rmu_sc0001521.1_g000009 Rmu_sc0002906.1_g000002 Rmu_sc0002906.1_g000011 Rmu_sc0002906.1_g000013 Rmu_sc0005719.1_g000016 Rmu_sc0005719.1_g000022 Rmu_sc0029460.1_g000001
rosa_roxburghii	Rroxscaffold_7G00185240 Rroxscaffold_7G00185250 Rroxscaffold_7G00185270 Rroxscaffold_7G00185280 Rroxscaffold_7G00185290 Rroxscaffold_7G00185330 Rroxscaffold_7G00185350
rosa_rugosa	Rorug06G0156100 Rorug06G0156300 Rorug06G0156400 Rorug06G0156500 Rorug06G0156600 Rorug06G0156700 Rorug06G0156800 Rorug06G0156900 Rorug06G0157000
rosa_samantha	Rh6AG267900 Rh6AG268100 Rh6AG268200 Rh6AG268400 Rh6AG268600 Rh6AG268700 Rh6AG268900 Rh6AG269100 Rh6BG270700 Rh6BG270900 Rh6BG271000 Rh6BG271200 Rh6BG271400 Rh6BG271500 Rh6CG270200 Rh6CG270400 Rh6CG270500 Rh6CG270800 Rh6CG270900 Rh6CG271000 Rh6CG271100 Rh6CG271300 Rh6DG263900 Rh6DG264100 Rh6DG264200 Rh6DG264400 Rh6DG264600 Rh6DG264800 Rh6DG265200
rosa_wichuraiana	Rw6G023210 Rw6G023220 Rw6G023230 Rw6G023240 Rw6G023250 Rw6G023260 Rw6G023270 Rw6G023280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	3 cut(s)	35, 340, 744
AcoI	YGGCCR	2 cut(s)	502, 547
AcsI	RAATTY	3 cut(s)	195, 233, 620
AcuI	CTGAAG	3 cut(s)	4, 441, 530
AfaI	GTAC	3 cut(s)	519, 664, 691
AfiI	CCNNNNNNNGG	6 cut(s)	35, 340, 443, 672, 673, 744
AgsI	TTSAA	3 cut(s)	14, 106, 304
AjnI	CCWGG	3 cut(s)	247, 459, 499
Alw21I	GWGCWC	3 cut(s)	333, 610, 730
Alw44I	GTGCAC	1 cut(s)	726
AlwNI	CAGNNNCTG	1 cut(s)	419
AoxI	GGCC	3 cut(s)	398, 502, 547
ApaLI	GTGCAC	1 cut(s)	726
ApeKI	GCWGC	4 cut(s)	48, 167, 211, 416
ApoI	RAATTY	3 cut(s)	195, 233, 620
AspS9I	GGNCC	2 cut(s)	399, 497
AsuHPI	GGTGA	1 cut(s)	449
AsuNHI	GCTAGC	1 cut(s)	170
AvaII	GGWCC	1 cut(s)	497
BaeGI	GKGCMC	1 cut(s)	730
BaeI	ACNNNNGTAYC	2 cut(s)	646, 679
BalI	TGGCCA	2 cut(s)	504, 549
BanII	GRGCYC	1 cut(s)	610
Bbv12I	GWGCWC	3 cut(s)	333, 610, 730
BbvI	GCAGC	4 cut(s)	35, 179, 198, 428
BccI	CCATC	3 cut(s)	338, 488, 665
BciT130I	CCWGG	3 cut(s)	249, 461, 501
BfaI	CTAG	4 cut(s)	171, 375, 396, 566
BfmI	CTRYAG	2 cut(s)	369, 658
BisI	GCNGC	4 cut(s)	49, 168, 212, 417
BlpI	GCTNAGC	1 cut(s)	570
BlsI	GCNGC	4 cut(s)	50, 169, 213, 418
Bme1390I	CCNGG	3 cut(s)	249, 461, 501
Bme18I	GGWCC	1 cut(s)	497
BmgT120I	GGNCC	2 cut(s)	399, 497
BmiI	GGNNCC	2 cut(s)	26, 401
BmrFI	CCNGG	3 cut(s)	249, 461, 501
BmrI	ACTGGG	1 cut(s)	123
BmsI	GCATC	1 cut(s)	686
BmtI	GCTAGC	1 cut(s)	174
BmuI	ACTGGG	1 cut(s)	123
BpmI	CTGGAG	2 cut(s)	285, 498
Bpu1102I	GCTNAGC	1 cut(s)	570
BsaBI	GATNNNNATC	1 cut(s)	122
BsaJI	CCNNGG	1 cut(s)	743
BsaXI	ACNNNNNCTCC	4 cut(s)	258, 276, 288, 306
Bsc4I	CCNNNNNNNGG	6 cut(s)	35, 340, 443, 672, 673, 744
Bse1I	ACTGG	4 cut(s)	129, 309, 360, 532
Bse8I	GATNNNNATC	1 cut(s)	122
BseBI	CCWGG	3 cut(s)	249, 461, 501
BseDI	CCNNGG	1 cut(s)	743
BseGI	GGATG	1 cut(s)	349
BseJI	GATNNNNATC	1 cut(s)	122
BseLI	CCNNNNNNNGG	6 cut(s)	35, 340, 443, 672, 673, 744
BseMII	CTCAG	1 cut(s)	351
BseNI	ACTGG	4 cut(s)	129, 309, 360, 532
BseSI	GKGCMC	1 cut(s)	730
BseXI	GCAGC	4 cut(s)	35, 179, 198, 428
BsgI	GTGCAG	1 cut(s)	447
BshFI	GGCC	3 cut(s)	400, 504, 549
BsiHKAI	GWGCWC	3 cut(s)	333, 610, 730
BslI	CCNNNNNNNGG	6 cut(s)	35, 340, 443, 672, 673, 744
BsnI	GGCC	3 cut(s)	400, 504, 549
Bsp1286I	GDGCHC	3 cut(s)	333, 610, 730
Bsp143I	GATC	2 cut(s)	483, 615
Bsp1720I	GCTNAGC	1 cut(s)	570
Bsp19I	CCATGG	1 cut(s)	743
BspANI	GGCC	3 cut(s)	400, 504, 549
BspCNI	CTCAG	1 cut(s)	352
BspLI	GGNNCC	2 cut(s)	26, 401
BspOI	GCTAGC	1 cut(s)	174
BspQI	GCTCTTC	1 cut(s)	506
BsrI	ACTGG	4 cut(s)	129, 309, 360, 532
BssECI	CCNNGG	1 cut(s)	743
BssMI	GATC	2 cut(s)	483, 615
BssT1I	CCWWGG	1 cut(s)	743
Bst2UI	CCWGG	3 cut(s)	249, 461, 501
Bst4CI	ACNGT	4 cut(s)	391, 595, 662, 725
Bst6I	CTCTTC	2 cut(s)	23, 506
BstC8I	GCNNGC	7 cut(s)	53, 63, 172, 209, 430, 506, 576
BstDEI	CTNAG	3 cut(s)	135, 360, 570
BstDSI	CCRYGG	1 cut(s)	743
BstF5I	GGATG	1 cut(s)	349
BstKTI	GATC	2 cut(s)	486, 618
BstMBI	GATC	2 cut(s)	483, 615
BstMWI	GCNNNNNNNGC	5 cut(s)	45, 365, 425, 461, 575
BstNI	CCWGG	3 cut(s)	249, 461, 501
BstNSI	RCATGY	2 cut(s)	65, 113
BstSCI	CCNGG	3 cut(s)	247, 459, 499
BstSFI	CTRYAG	2 cut(s)	369, 658
BstSLI	GKGCMC	1 cut(s)	730
BstV1I	GCAGC	4 cut(s)	35, 179, 198, 428
BstXI	CCANNNNNNTGG	1 cut(s)	189
BsuRI	GGCC	3 cut(s)	400, 504, 549
BtgI	CCRYGG	1 cut(s)	743
BtsCI	GGATG	1 cut(s)	349
BtsI	GCAGTG	1 cut(s)	333
BtsIMutI	CAGTG	4 cut(s)	316, 333, 600, 721
Cac8I	GCNNGC	7 cut(s)	53, 63, 172, 209, 430, 506, 576
CaiI	CAGNNNCTG	1 cut(s)	419
Cfr13I	GGNCC	2 cut(s)	399, 497
CseI	GACGC	1 cut(s)	203
Csp6I	GTAC	3 cut(s)	518, 663, 690
CviAII	CATG	4 cut(s)	62, 110, 587, 744
CviQI	GTAC	3 cut(s)	518, 663, 690
DdeI	CTNAG	3 cut(s)	135, 360, 570
DpnI	GATC	2 cut(s)	485, 617
DpnII	GATC	2 cut(s)	483, 615
EaeI	YGGCCR	2 cut(s)	502, 547
Eam1104I	CTCTTC	2 cut(s)	23, 506
EarI	CTCTTC	2 cut(s)	23, 506
Ecl136II	GAGCTC	1 cut(s)	608
Eco130I	CCWWGG	1 cut(s)	743
Eco24I	GRGCYC	1 cut(s)	610
Eco47I	GGWCC	1 cut(s)	497
Eco53kI	GAGCTC	1 cut(s)	608
Eco57I	CTGAAG	3 cut(s)	4, 441, 530
EcoICRI	GAGCTC	1 cut(s)	608
EcoO109I	RGGNCCY	1 cut(s)	399
EcoRII	CCWGG	3 cut(s)	247, 459, 499
EcoT14I	CCWWGG	1 cut(s)	743
EcoT22I	ATGCAT	1 cut(s)	63
EcoT38I	GRGCYC	1 cut(s)	610
ErhI	CCWWGG	1 cut(s)	743
FaeI	CATG	4 cut(s)	65, 113, 590, 747
FatI	CATG	4 cut(s)	61, 109, 586, 743
Fnu4HI	GCNGC	4 cut(s)	49, 168, 212, 417
FokI	GGATG	1 cut(s)	356
FriOI	GRGCYC	1 cut(s)	610
Fsp4HI	GCNGC	4 cut(s)	49, 168, 212, 417
FspBI	CTAG	4 cut(s)	171, 375, 396, 566
GluI	GCNGC	4 cut(s)	49, 168, 212, 417
GsuI	CTGGAG	2 cut(s)	285, 498
HaeIII	GGCC	3 cut(s)	400, 504, 549
HgaI	GACGC	1 cut(s)	203
Hin1II	CATG	4 cut(s)	65, 113, 590, 747
HindIII	AAGCTT	1 cut(s)	53
HinfI	GANTC	2 cut(s)	118, 769
HphI	GGTGA	1 cut(s)	449
Hpy166II	GTNNAC	2 cut(s)	353, 728
Hpy188I	TCNGA	2 cut(s)	201, 768
Hpy188III	TCNNGA	2 cut(s)	628, 653
Hpy8I	GTNNAC	2 cut(s)	353, 728
HpyAV	CCTTC	1 cut(s)	416
HpyCH4III	ACNGT	4 cut(s)	391, 595, 662, 725
HpyCH4V	TGCA	5 cut(s)	51, 61, 428, 557, 728
HpyF10VI	GCNNNNNNNGC	5 cut(s)	45, 365, 425, 461, 575
HpyF3I	CTNAG	3 cut(s)	135, 360, 570
Hsp92II	CATG	4 cut(s)	65, 113, 590, 747
Kzo9I	GATC	2 cut(s)	483, 615
LguI	GCTCTTC	1 cut(s)	506
LmnI	GCTCC	2 cut(s)	336, 605
Lsp1109I	GCAGC	4 cut(s)	35, 179, 198, 428
LweI	GCATC	1 cut(s)	686
MaeI	CTAG	4 cut(s)	171, 375, 396, 566
MaeIII	GTNAC	2 cut(s)	589, 595
MalI	GATC	2 cut(s)	485, 617
MboI	GATC	2 cut(s)	483, 615
MboII	GAAGA	2 cut(s)	10, 523
MhlI	GDGCHC	3 cut(s)	333, 610, 730
MlsI	TGGCCA	2 cut(s)	504, 549
MluCI	AATT	7 cut(s)	158, 195, 233, 383, 620, 717, 750
MluNI	TGGCCA	2 cut(s)	504, 549
MlyI	GAGTC	1 cut(s)	763
MmeI	TCCRAC	2 cut(s)	262, 586
MnlI	CCTC	5 cut(s)	83, 139, 228, 271, 341
Mox20I	TGGCCA	2 cut(s)	504, 549
Mph1103I	ATGCAT	1 cut(s)	63
MscI	TGGCCA	2 cut(s)	504, 549
MseI	TTAA	2 cut(s)	294, 683
Msp20I	TGGCCA	2 cut(s)	504, 549
MspA1I	CMGCKG	3 cut(s)	185, 419, 508
MspR9I	CCNGG	3 cut(s)	249, 461, 501
MvaI	CCWGG	3 cut(s)	249, 461, 501
MwoI	GCNNNNNNNGC	5 cut(s)	45, 365, 425, 461, 575
NcoI	CCATGG	1 cut(s)	743
NdeII	GATC	2 cut(s)	483, 615
NheI	GCTAGC	1 cut(s)	170
NlaIII	CATG	4 cut(s)	65, 113, 590, 747
NlaIV	GGNNCC	2 cut(s)	26, 401
NmuCI	GTSAC	2 cut(s)	589, 595
NsiI	ATGCAT	1 cut(s)	63
NspI	RCATGY	2 cut(s)	65, 113
PaeI	GCATGC	1 cut(s)	65
PciSI	GCTCTTC	1 cut(s)	506
PfeI	GAWTC	1 cut(s)	118
PflMI	CCANNNNNTGG	3 cut(s)	35, 340, 744
PkrI	GCNGC	4 cut(s)	50, 169, 213, 418
PleI	GAGTC	1 cut(s)	763
PpsI	GAGTC	1 cut(s)	763
Psp124BI	GAGCTC	1 cut(s)	610
Psp6I	CCWGG	3 cut(s)	247, 459, 499
PspGI	CCWGG	3 cut(s)	247, 459, 499
PspN4I	GGNNCC	2 cut(s)	26, 401
PspPI	GGNCC	2 cut(s)	399, 497
PstNI	CAGNNNCTG	1 cut(s)	419
PvuII	CAGCTG	3 cut(s)	185, 419, 508
RsaI	GTAC	3 cut(s)	519, 664, 691
RsaNI	GTAC	3 cut(s)	518, 663, 690
SacI	GAGCTC	1 cut(s)	610
SapI	GCTCTTC	1 cut(s)	506
SaqAI	TTAA	2 cut(s)	294, 683
SatI	GCNGC	4 cut(s)	49, 168, 212, 417
Sau3AI	GATC	2 cut(s)	483, 615
Sau96I	GGNCC	2 cut(s)	399, 497
SchI	GAGTC	1 cut(s)	763
ScrFI	CCNGG	3 cut(s)	249, 461, 501
SduI	GDGCHC	3 cut(s)	333, 610, 730
SfaNI	GCATC	1 cut(s)	686
SfcI	CTRYAG	2 cut(s)	369, 658
SinI	GGWCC	1 cut(s)	497
SphI	GCATGC	1 cut(s)	65
Sse9I	AATT	7 cut(s)	158, 195, 233, 383, 620, 717, 750
SspMI	CTAG	4 cut(s)	171, 375, 396, 566
SstI	GAGCTC	1 cut(s)	610
StyD4I	CCNGG	3 cut(s)	247, 459, 499
StyI	CCWWGG	1 cut(s)	743
TaaI	ACNGT	4 cut(s)	391, 595, 662, 725
TaqI	TCGA	3 cut(s)	486, 618, 700
TasI	AATT	7 cut(s)	158, 195, 233, 383, 620, 717, 750
TatI	WGTACW	1 cut(s)	689
TfiI	GAWTC	1 cut(s)	118
Tru1I	TTAA	2 cut(s)	294, 683
Tru9I	TTAA	2 cut(s)	294, 683
TscAI	CASTG	4 cut(s)	316, 333, 600, 728
TseFI	GTSAC	2 cut(s)	589, 595
TseI	GCWGC	4 cut(s)	48, 167, 211, 416
Tsp45I	GTSAC	2 cut(s)	589, 595
TspDTI	ATGAA	2 cut(s)	90, 660
TspRI	CASTG	4 cut(s)	316, 333, 600, 728
Van91I	CCANNNNNTGG	3 cut(s)	35, 340, 744
VneI	GTGCAC	1 cut(s)	726
VpaK11BI	GGWCC	1 cut(s)	497
XapI	RAATTY	3 cut(s)	195, 233, 620
XceI	RCATGY	2 cut(s)	65, 113
XcmI	CCANNNNNNNNNTGG	1 cut(s)	341
XspI	CTAG	4 cut(s)	171, 375, 396, 566
Zsp2I	ATGCAT	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.