Rh6AG268900

Quinone-oxidoreductase homolog, chloroplastic

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Forward (+)
46200162 .. 46202308
2147 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG268900.1

Sequence Viewer

Length: 999 bp
ATGAAAGCCATGGCGGTAAAGCTTATGCATGCGGTTCAATACAATAGTTATGGTGGAGGACCTTCTGGTTTAAAGCATGTTGAGATTCCGATCCCAACTCCGAAGAAAGATGAGGTTTTGCTGAAAGTGGAAGCAGCTAGTATAAATCCAGTTGATTGGAAACTGCAGAAAGGCGGGGCGCGGCCTTTTTACCCACGCAATTTGCCTCATACACCTGCTTGTGATGTGGCCGGAGAGGTTGTCGAGGTTGGACAAGGAGTTCAGAATTTCAAAGTGGGCGACAAAGTTGTCGCAGCTCTAACACTTGCTACTGGAGGTGCATTTGCTGAGTATGCAACTGCTAAAGAGTGTTTCACGGCTACTAGGCCGCCTGAGGTTTCAGCAGCCGAAGCTGCCGGGTTACCTGTTGCTGGTCTCACAGCTCACCAGTGTCTCACTGAAGCCGCAGGAGTCAAGCTGGATGGCACAGGCCCTCAGAAGAACATATTGATTACCGCTGCCTCTGGAGGTGTGGGGCACTATGCAGTCCAACTAGCTAAGCTAGGAAACACCCATGTCACGGCCACTTGTGGAGCTCGTAACATTGATTTCGTCAAGAGCTTGGGGGCTGATGAGGTTCTTGACTACAAGACCCCTGAAGGGGCAGCTCTGAGTAGCCCATCTGGTCGGAAATATGATGCCGTGATCCACTGTGCAACAGCCATTCCTTGGTCCACTTTTAAGCCGAATTTGAGTCCAAATGGGAAGGTCATAGACATTAGTCCCAGTCTAAGTAACTGGCTCACTATGGCTGTAAACAAACTCACCTTCTCCAAGAAGCAGCTAGTGCAGCTGATGGTGAATCCCAAGGCTGAGAACCTGGATTATCTTGTTAAGTTGGTGAAGGAAGGAAAGCTCAAGACGGTGATTGACTCCAGACATCCTTTGAGCAAGGCTGAAGATGCTTGGGTTAAGAGTATCGATGGCCATGCTACTGGGAAAATCATTGTGGAGCCTTAA

Protein Analysis

332

Amino Acids

35.03

Weight (kDa)

8.9

Isoelectric Point (pI)

32.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 36 - 117 9.4e-18 Alcohol dehydrogenase GroES-like domain
ADH_zinc_N PF00107 170 - 281 7.6e-10 Zinc-binding dehydrogenase
ADH_zinc_N_2 PF13602 201 - 330 1.5e-21 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000313)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G13010
fragaria_vesca FvH4_2g18240 FvH4_2g18280 FvH4_2g18310 FvH4_2g18320 FvH4_2g18330 FvH4_2g18340 FvH4_2g18350
malus_domestica MD05G1166800.v1.1 MD05G1167200.v1.1 MD05G1167300.v1.1 MD05G1167400.v1.1 MD05G1167600.v1.1 MD05G1168000.v1.1 MD05G1168200.v1.1 MD05G1168400.v1.1 MD05G1168600.v1.1 MD05G1168700.v1.1 MD05G1168800.v1.1 MD10G1156900.v1.1 MD10G1157000.v1.1 MD10G1157100.v1.1 MD10G1157200.v1.1
prunus_persica Prupe.8G195100_v2.0.a1 Prupe.8G195100_v2.0.a1 Prupe.8G195300_v2.0.a1 Prupe.8G195600_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G196000_v2.0.a1 Prupe.8G196000_v2.0.a1
pyrus_communis pycom05g15560 pycom05g15600 pycom05g15610 pycom05g15620 pycom05g15630 pycom10g13550 pycom10g13570
rosa_chinensis RchiOBHm_Chr6g0283611 RchiOBHm_Chr6g0283631 RchiOBHm_Chr6g0283641 RchiOBHm_Chr6g0283661 RchiOBHm_Chr6g0283681 RchiOBHm_Chr6g0283691 RchiOBHm_Chr6g0283701 RchiOBHm_Chr6g0283711 RchiOBHm_Chr6g0283721
rosa_laevigata RLG00000012804 RLG00000012807 RLG00000012811
rosa_multiflora Rmu_co8263921.1_g000001 Rmu_sc0001521.1_g000009 Rmu_sc0002906.1_g000002 Rmu_sc0002906.1_g000011 Rmu_sc0002906.1_g000013 Rmu_sc0005719.1_g000016 Rmu_sc0005719.1_g000022 Rmu_sc0029460.1_g000001
rosa_roxburghii Rroxscaffold_7G00185240 Rroxscaffold_7G00185250 Rroxscaffold_7G00185270 Rroxscaffold_7G00185280 Rroxscaffold_7G00185290 Rroxscaffold_7G00185330 Rroxscaffold_7G00185350
rosa_rugosa Rorug06G0156100 Rorug06G0156300 Rorug06G0156400 Rorug06G0156500 Rorug06G0156600 Rorug06G0156700 Rorug06G0156800 Rorug06G0156900 Rorug06G0157000
rosa_samantha Rh6AG267900 Rh6AG268100 Rh6AG268200 Rh6AG268400 Rh6AG268600 Rh6AG268700 Rh6AG268900 Rh6AG269100 Rh6BG270700 Rh6BG270900 Rh6BG271000 Rh6BG271200 Rh6BG271400 Rh6BG271500 Rh6CG270200 Rh6CG270400 Rh6CG270500 Rh6CG270800 Rh6CG270900 Rh6CG271000 Rh6CG271100 Rh6CG271300 Rh6DG263900 Rh6DG264100 Rh6DG264200 Rh6DG264400 Rh6DG264600 Rh6DG264800 Rh6DG265200
rosa_wichuraiana Rw6G023210 Rw6G023220 Rw6G023230 Rw6G023240 Rw6G023250 Rw6G023260 Rw6G023270 Rw6G023280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 223
AasI GACNNNNNNGTC 1 cut(s) 287
Acc36I ACCTGC 1 cut(s) 223
AccB7I CCANNNNNTGG 1 cut(s) 708
AccII CGCG 1 cut(s) 181
AciI CCGC 7 cut(s) 14, 32, 174, 181, 368, 444, 495
AclWI GGATC 2 cut(s) 85, 679
AcoI YGGCCR 3 cut(s) 228, 561, 964
AcsI RAATTY 2 cut(s) 265, 727
AcuI CTGAAG 3 cut(s) 459, 657, 957
AfiI CCNNNNNNNGG 5 cut(s) 410, 559, 639, 640, 708
AgsI TTSAA 2 cut(s) 38, 271
AjnI CCWGG 1 cut(s) 858
AloI GAACNNNNNNTCC 2 cut(s) 243, 275
Alw21I GWGCWC 1 cut(s) 577
Alw26I GTCTC 2 cut(s) 419, 437
AlwI GGATC 2 cut(s) 85, 679
AoxI GGCC 6 cut(s) 182, 228, 365, 469, 561, 964
ApeKI GCWGC 8 cut(s) 134, 293, 383, 392, 497, 644, 820, 829
ApoI RAATTY 2 cut(s) 265, 727
AspLEI GCGC 1 cut(s) 181
AspS9I GGNCC 3 cut(s) 59, 470, 711
AsuC2I CCSGG 1 cut(s) 397
AsuHPI GGTGA 5 cut(s) 416, 796, 850, 892, 916
AvaII GGWCC 2 cut(s) 59, 711
AxyI CCTNAGG 1 cut(s) 372
BaeGI GKGCMC 1 cut(s) 519
BalI TGGCCA 1 cut(s) 966
BanII GRGCYC 1 cut(s) 577
Bbv12I GWGCWC 1 cut(s) 577
BbvI GCAGC 8 cut(s) 146, 305, 379, 395, 484, 656, 832, 841
BccI CCATC 4 cut(s) 455, 667, 829, 956
BceAI ACGGC 3 cut(s) 372, 576, 665
BcgI CGANNNNNNTGC 2 cut(s) 950, 984
BciT130I CCWGG 1 cut(s) 860
BcnI CCSGG 1 cut(s) 397
BcoDI GTCTC 2 cut(s) 419, 437
BfaI CTAG 5 cut(s) 138, 363, 533, 542, 824
BfmI CTRYAG 1 cut(s) 164
BfuAI ACCTGC 1 cut(s) 223
BlpI GCTNAGC 1 cut(s) 537
Bme1390I CCNGG 2 cut(s) 397, 860
Bme18I GGWCC 2 cut(s) 59, 711
BmgT120I GGNCC 3 cut(s) 59, 470, 711
BmiI GGNNCC 1 cut(s) 993
BmrFI CCNGG 2 cut(s) 397, 860
BmrI ACTGGG 2 cut(s) 759, 984
BmsI GCATC 2 cut(s) 667, 931
BmuI ACTGGG 2 cut(s) 759, 984
BoxI GACNNNNGTC 1 cut(s) 759
BpmI CTGGAG 3 cut(s) 333, 525, 898
Bpu1102I GCTNAGC 1 cut(s) 537
BpuEI CTTGAG 1 cut(s) 881
BpuMI CCSGG 1 cut(s) 397
Bsa29I ATCGAT 1 cut(s) 960
BsaBI GATNNNNATC 1 cut(s) 89
BsaI GGTCTC 1 cut(s) 419
BsaJI CCNNGG 3 cut(s) 9, 707, 846
BsaXI ACNNNNNCTCC 2 cut(s) 225, 255
Bsc4I CCNNNNNNNGG 5 cut(s) 410, 559, 639, 640, 708
Bse1I ACTGG 6 cut(s) 149, 316, 427, 765, 782, 979
Bse21I CCTNAGG 1 cut(s) 372
Bse8I GATNNNNATC 1 cut(s) 89
BseBI CCWGG 1 cut(s) 860
BseCI ATCGAT 1 cut(s) 960
BseDI CCNNGG 3 cut(s) 9, 707, 846
BseGI GGATG 2 cut(s) 466, 919
BseJI GATNNNNATC 1 cut(s) 89
BseLI CCNNNNNNNGG 5 cut(s) 410, 559, 639, 640, 708
BseMII CTCAG 5 cut(s) 318, 363, 488, 641, 843
BseNI ACTGG 6 cut(s) 149, 316, 427, 765, 782, 979
BseSI GKGCMC 1 cut(s) 519
BseXI GCAGC 8 cut(s) 146, 305, 379, 395, 484, 656, 832, 841
BsgI GTGCAG 1 cut(s) 848
Bsh1236I CGCG 1 cut(s) 181
BshFI GGCC 6 cut(s) 184, 230, 367, 471, 563, 966
BshVI ATCGAT 1 cut(s) 960
BsiHKAI GWGCWC 1 cut(s) 577
BsiSI CCGG 2 cut(s) 231, 396
BslFI GGGAC 1 cut(s) 747
BslI CCNNNNNNNGG 5 cut(s) 410, 559, 639, 640, 708
BsmAI GTCTC 2 cut(s) 419, 437
BsmFI GGGAC 1 cut(s) 747
BsnI GGCC 6 cut(s) 184, 230, 367, 471, 563, 966
Bso31I GGTCTC 1 cut(s) 419
Bsp1286I GDGCHC 2 cut(s) 519, 577
Bsp143I GATC 2 cut(s) 90, 684
Bsp1720I GCTNAGC 1 cut(s) 537
Bsp19I CCATGG 1 cut(s) 9
BspACI CCGC 7 cut(s) 14, 32, 174, 181, 368, 444, 495
BspANI GGCC 6 cut(s) 184, 230, 367, 471, 563, 966
BspCNI CTCAG 5 cut(s) 319, 364, 487, 642, 844
BspDI ATCGAT 1 cut(s) 960
BspFNI CGCG 1 cut(s) 181
BspLI GGNNCC 1 cut(s) 993
BspMAI CTGCAG 1 cut(s) 168
BspMI ACCTGC 1 cut(s) 223
BspPI GGATC 2 cut(s) 85, 679
BspTNI GGTCTC 1 cut(s) 419
BsrI ACTGG 6 cut(s) 149, 316, 427, 765, 782, 979
BssECI CCNNGG 3 cut(s) 9, 707, 846
BssMI GATC 2 cut(s) 90, 684
BssT1I CCWWGG 3 cut(s) 9, 707, 846
Bst2UI CCWGG 1 cut(s) 860
Bst4CI ACNGT 2 cut(s) 692, 904
BstAPI GCANNNNNTGC 1 cut(s) 826
BstC8I GCNNGC 1 cut(s) 30
BstDEI CTNAG 7 cut(s) 327, 372, 474, 537, 650, 770, 852
BstDSI CCRYGG 1 cut(s) 9
BstEII GGTNACC 1 cut(s) 399
BstF5I GGATG 2 cut(s) 466, 919
BstFNI CGCG 1 cut(s) 181
BstHHI GCGC 1 cut(s) 181
BstKTI GATC 2 cut(s) 93, 687
BstMAI GTCTC 2 cut(s) 419, 437
BstMBI GATC 2 cut(s) 90, 684
BstMWI GCNNNNNNNGC 6 cut(s) 332, 389, 392, 826, 829, 941
BstNI CCWGG 1 cut(s) 860
BstNSI RCATGY 2 cut(s) 32, 80
BstPAI GACNNNNGTC 1 cut(s) 759
BstPI GGTNACC 1 cut(s) 399
BstSCI CCNGG 2 cut(s) 395, 858
BstSFI CTRYAG 1 cut(s) 164
BstSLI GKGCMC 1 cut(s) 519
BstUI CGCG 1 cut(s) 181
BstV1I GCAGC 8 cut(s) 146, 305, 379, 395, 484, 656, 832, 841
BstXI CCANNNNNNTGG 2 cut(s) 156, 974
Bsu15I ATCGAT 1 cut(s) 960
Bsu36I CCTNAGG 1 cut(s) 372
BsuRI GGCC 6 cut(s) 184, 230, 367, 471, 563, 966
BsuTUI ATCGAT 1 cut(s) 960
BtgI CCRYGG 1 cut(s) 9
BtsCI GGATG 2 cut(s) 466, 919
BtsIMutI CAGTG 3 cut(s) 434, 435, 688
BveI ACCTGC 1 cut(s) 223
Cac8I GCNNGC 1 cut(s) 30
CfoI GCGC 1 cut(s) 181
Cfr13I GGNCC 3 cut(s) 59, 470, 711
ClaI ATCGAT 1 cut(s) 960
CspCI CAANNNNNGTGG 2 cut(s) 183, 218
CviAII CATG 5 cut(s) 10, 29, 77, 554, 968
DdeI CTNAG 7 cut(s) 327, 372, 474, 537, 650, 770, 852
DpnI GATC 2 cut(s) 92, 686
DpnII GATC 2 cut(s) 90, 684
DraI TTTAAA 1 cut(s) 72
DrdI GACNNNNNNGTC 1 cut(s) 287
DseDI GACNNNNNNGTC 1 cut(s) 287
EaeI YGGCCR 3 cut(s) 228, 561, 964
Ecl136II GAGCTC 1 cut(s) 575
Eco130I CCWWGG 3 cut(s) 9, 707, 846
Eco24I GRGCYC 1 cut(s) 577
Eco31I GGTCTC 1 cut(s) 419
Eco47I GGWCC 2 cut(s) 59, 711
Eco53kI GAGCTC 1 cut(s) 575
Eco57I CTGAAG 3 cut(s) 459, 657, 957
Eco81I CCTNAGG 1 cut(s) 372
Eco91I GGTNACC 1 cut(s) 399
EcoICRI GAGCTC 1 cut(s) 575
EcoO109I RGGNCCY 2 cut(s) 59, 470
EcoO65I GGTNACC 1 cut(s) 399
EcoRII CCWGG 1 cut(s) 858
EcoT14I CCWWGG 3 cut(s) 9, 707, 846
EcoT22I ATGCAT 1 cut(s) 30
EcoT38I GRGCYC 1 cut(s) 577
ErhI CCWWGG 3 cut(s) 9, 707, 846
FaeI CATG 5 cut(s) 13, 32, 80, 557, 971
FaqI GGGAC 1 cut(s) 747
FatI CATG 5 cut(s) 9, 28, 76, 553, 967
FauI CCCGC 1 cut(s) 167
FokI GGATG 2 cut(s) 473, 906
FriOI GRGCYC 1 cut(s) 577
FspBI CTAG 5 cut(s) 138, 363, 533, 542, 824
GlaI GCGC 1 cut(s) 180
GsuI CTGGAG 3 cut(s) 333, 525, 898
HaeIII GGCC 6 cut(s) 184, 230, 367, 471, 563, 966
HapII CCGG 2 cut(s) 231, 396
HhaI GCGC 1 cut(s) 181
Hin1II CATG 5 cut(s) 13, 32, 80, 557, 971
Hin6I GCGC 1 cut(s) 179
HinP1I GCGC 1 cut(s) 179
HindIII AAGCTT 1 cut(s) 20
HinfI GANTC 5 cut(s) 85, 450, 733, 841, 911
HpaII CCGG 2 cut(s) 231, 396
HphI GGTGA 5 cut(s) 416, 796, 850, 892, 916
Hpy166II GTNNAC 2 cut(s) 714, 796
Hpy188I TCNGA 6 cut(s) 90, 102, 264, 477, 651, 669
Hpy188III TCNNGA 5 cut(s) 504, 595, 620, 898, 915
Hpy8I GTNNAC 2 cut(s) 714, 796
HpyAV CCTTC 6 cut(s) 72, 632, 739, 817, 877, 881
HpyCH4III ACNGT 2 cut(s) 692, 904
HpyCH4V TGCA 7 cut(s) 28, 166, 320, 335, 524, 695, 829
HpyF10VI GCNNNNNNNGC 6 cut(s) 332, 389, 392, 826, 829, 941
HpyF3I CTNAG 7 cut(s) 327, 372, 474, 537, 650, 770, 852
Hsp92II CATG 5 cut(s) 13, 32, 80, 557, 971
HspAI GCGC 1 cut(s) 179
Kzo9I GATC 2 cut(s) 90, 684
LmnI GCTCC 2 cut(s) 572, 991
Lsp1109I GCAGC 8 cut(s) 146, 305, 379, 395, 484, 656, 832, 841
LweI GCATC 2 cut(s) 667, 931
MaeI CTAG 5 cut(s) 138, 363, 533, 542, 824
MaeIII GTNAC 4 cut(s) 399, 556, 578, 773
MalI GATC 2 cut(s) 92, 686
MboI GATC 2 cut(s) 90, 684
MboII GAAGA 3 cut(s) 115, 490, 950
MhlI GDGCHC 2 cut(s) 519, 577
MlsI TGGCCA 1 cut(s) 966
MluCI AATT 3 cut(s) 199, 265, 727
MluNI TGGCCA 1 cut(s) 966
MlyI GAGTC 3 cut(s) 459, 742, 905
MmeI TCCRAC 3 cut(s) 229, 553, 647
Mox20I TGGCCA 1 cut(s) 966
Mph1103I ATGCAT 1 cut(s) 30
MscI TGGCCA 1 cut(s) 966
MseI TTAA 5 cut(s) 71, 720, 873, 951, 997
Msp20I TGGCCA 1 cut(s) 966
MspA1I CMGCKG 2 cut(s) 497, 832
MspI CCGG 2 cut(s) 231, 396
MspR9I CCNGG 2 cut(s) 397, 860
MvaI CCWGG 1 cut(s) 860
MvnI CGCG 1 cut(s) 181
MwoI GCNNNNNNNGC 6 cut(s) 332, 389, 392, 826, 829, 941
NciI CCSGG 1 cut(s) 397
NcoI CCATGG 1 cut(s) 9
NdeII GATC 2 cut(s) 90, 684
NlaIII CATG 5 cut(s) 13, 32, 80, 557, 971
NlaIV GGNNCC 1 cut(s) 993
NmuCI GTSAC 1 cut(s) 556
NsiI ATGCAT 1 cut(s) 30
NspI RCATGY 2 cut(s) 32, 80
PaeI GCATGC 1 cut(s) 32
PaqCI CACCTGC 1 cut(s) 223
PfeI GAWTC 2 cut(s) 85, 841
PflMI CCANNNNNTGG 1 cut(s) 708
PleI GAGTC 3 cut(s) 458, 741, 905
PpsI GAGTC 3 cut(s) 458, 741, 905
PpuMI RGGWCCY 1 cut(s) 59
PshAI GACNNNNGTC 1 cut(s) 759
Psp124BI GAGCTC 1 cut(s) 577
Psp5II RGGWCCY 1 cut(s) 59
Psp6I CCWGG 1 cut(s) 858
PspEI GGTNACC 1 cut(s) 399
PspGI CCWGG 1 cut(s) 858
PspN4I GGNNCC 1 cut(s) 993
PspPI GGNCC 3 cut(s) 59, 470, 711
PspPPI RGGWCCY 1 cut(s) 59
PstI CTGCAG 1 cut(s) 168
PvuII CAGCTG 1 cut(s) 832
SacI GAGCTC 1 cut(s) 577
SaqAI TTAA 5 cut(s) 71, 720, 873, 951, 997
Sau3AI GATC 2 cut(s) 90, 684
Sau96I GGNCC 3 cut(s) 59, 470, 711
SchI GAGTC 3 cut(s) 459, 742, 905
ScrFI CCNGG 2 cut(s) 397, 860
SduI GDGCHC 2 cut(s) 519, 577
SfaNI GCATC 2 cut(s) 667, 931
SfcI CTRYAG 1 cut(s) 164
SinI GGWCC 2 cut(s) 59, 711
SmlI CTYRAG 1 cut(s) 896
SmoI CTYRAG 1 cut(s) 896
SphI GCATGC 1 cut(s) 32
Sse9I AATT 3 cut(s) 199, 265, 727
SsiI CCGC 7 cut(s) 14, 32, 174, 181, 368, 444, 495
SspMI CTAG 5 cut(s) 138, 363, 533, 542, 824
SstI GAGCTC 1 cut(s) 577
StyD4I CCNGG 2 cut(s) 395, 858
StyI CCWWGG 3 cut(s) 9, 707, 846
TaaI ACNGT 2 cut(s) 692, 904
TaqI TCGA 2 cut(s) 243, 960
TasI AATT 3 cut(s) 199, 265, 727
TauI GCSGC 3 cut(s) 184, 370, 446
TfiI GAWTC 2 cut(s) 85, 841
Tru1I TTAA 5 cut(s) 71, 720, 873, 951, 997
Tru9I TTAA 5 cut(s) 71, 720, 873, 951, 997
TscAI CASTG 3 cut(s) 434, 442, 695
TseFI GTSAC 1 cut(s) 556
TseI GCWGC 8 cut(s) 134, 293, 383, 392, 497, 644, 820, 829
Tsp45I GTSAC 1 cut(s) 556
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 3 cut(s) 434, 442, 695
Van91I CCANNNNNTGG 1 cut(s) 708
VpaK11BI GGWCC 2 cut(s) 59, 711
XapI RAATTY 2 cut(s) 265, 727
XceI RCATGY 2 cut(s) 32, 80
XspI CTAG 5 cut(s) 138, 363, 533, 542, 824
Zsp2I ATGCAT 1 cut(s) 30
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.