Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0000313

Physical Location & Seq

Genomic Coordinates Reverse (-)

22395851 .. 22399985

Gene Structure 4135 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0156400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGCCATACTTGGTTCTCCACAGCCCACCACTCGCGTCCTTCCCTTGTCACCTTCCATCATCAAGGTTCCCAATTCAGACCCAGAAGCCAGCGGCCTGGATTCACCCAAGAAATCATCGTGCGGCTCTGCTCCGCGGCATAAGGTGCATGGCGAAGCCGCGCAGAGTGGCAATGGTGGCTAAGCAGATACAGAGGGAGCTCTCTGACATGCTCTTAACAGATAAGGTGTTGCAGTACGCTATTTTGCCTGAGGTTTCTTTGGGTGCCGACCGTTACCTCTCTTCTTTAACCACAATTAGTGATGTTGAGGTCTCTACCGACTTGCAGGTGGTTAAAGTATTTGTATCCGTTTTTGGCGATGAAAGAGGGAAGGAGGTTGCACTTGCTGGGCTAAAGTCAAAAGCAAAGTACGTCCGTGGTGAATTGGGAAGGCGTATGAAACTGCGGTTAACTCCTGAGATACGCTTCATAGAAGATGAATCGTTAGAGAGAGGAAGCAGGGTGATTGCAATATTAGATCGGATAAAAAATGAGAAGAAAGTTGGAGAAGTTCAAGATGAGGAGGAATTGGAATCATCCAACGCACCTCAGGATGATAAAGACTGGGAGGATGATGACCCTGATGAAGACATTATATACATAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N_2

Protein Analysis

215

Amino Acids

24.45

Weight (kDa)

6.14

Isoelectric Point (pI)

47.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RBFA	PF02033	55 - 171	2.3e-26	Ribosome-binding factor A

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13010
fragaria_vesca	FvH4_2g18240 FvH4_2g18280 FvH4_2g18310 FvH4_2g18320 FvH4_2g18330 FvH4_2g18340 FvH4_2g18350
malus_domestica	MD05G1166800.v1.1 MD05G1167200.v1.1 MD05G1167300.v1.1 MD05G1167400.v1.1 MD05G1167600.v1.1 MD05G1168000.v1.1 MD05G1168200.v1.1 MD05G1168400.v1.1 MD05G1168600.v1.1 MD05G1168700.v1.1 MD05G1168800.v1.1 MD10G1156900.v1.1 MD10G1157000.v1.1 MD10G1157100.v1.1 MD10G1157200.v1.1
prunus_persica	Prupe.8G195100_v2.0.a1 Prupe.8G195100_v2.0.a1 Prupe.8G195300_v2.0.a1 Prupe.8G195600_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G196000_v2.0.a1 Prupe.8G196000_v2.0.a1
pyrus_communis	pycom05g15560 pycom05g15600 pycom05g15610 pycom05g15620 pycom05g15630 pycom10g13550 pycom10g13570
rosa_chinensis	RchiOBHm_Chr6g0283611 RchiOBHm_Chr6g0283631 RchiOBHm_Chr6g0283641 RchiOBHm_Chr6g0283661 RchiOBHm_Chr6g0283681 RchiOBHm_Chr6g0283691 RchiOBHm_Chr6g0283701 RchiOBHm_Chr6g0283711 RchiOBHm_Chr6g0283721
rosa_laevigata	RLG00000012804 RLG00000012807 RLG00000012811
rosa_multiflora	Rmu_co8263921.1_g000001 Rmu_sc0001521.1_g000009 Rmu_sc0002906.1_g000002 Rmu_sc0002906.1_g000011 Rmu_sc0002906.1_g000013 Rmu_sc0005719.1_g000016 Rmu_sc0005719.1_g000022 Rmu_sc0029460.1_g000001
rosa_roxburghii	Rroxscaffold_7G00185240 Rroxscaffold_7G00185250 Rroxscaffold_7G00185270 Rroxscaffold_7G00185280 Rroxscaffold_7G00185290 Rroxscaffold_7G00185330 Rroxscaffold_7G00185350
rosa_rugosa	Rorug06G0156100 Rorug06G0156300 Rorug06G0156400 Rorug06G0156500 Rorug06G0156600 Rorug06G0156700 Rorug06G0156800 Rorug06G0156900 Rorug06G0157000
rosa_samantha	Rh6AG267900 Rh6AG268100 Rh6AG268200 Rh6AG268400 Rh6AG268600 Rh6AG268700 Rh6AG268900 Rh6AG269100 Rh6BG270700 Rh6BG270900 Rh6BG271000 Rh6BG271200 Rh6BG271400 Rh6BG271500 Rh6CG270200 Rh6CG270400 Rh6CG270500 Rh6CG270800 Rh6CG270900 Rh6CG271000 Rh6CG271100 Rh6CG271300 Rh6DG263900 Rh6DG264100 Rh6DG264200 Rh6DG264400 Rh6DG264600 Rh6DG264800 Rh6DG265200
rosa_wichuraiana	Rw6G023210 Rw6G023220 Rw6G023230 Rw6G023240 Rw6G023250 Rw6G023260 Rw6G023270 Rw6G023280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	316
Acc36I	ACCTGC	1 cut(s)	316
AccB1I	GGYRCC	1 cut(s)	263
AccII	CGCG	3 cut(s)	35, 135, 160
AciI	CCGC	6 cut(s)	92, 122, 133, 135, 158, 445
AfaI	GTAC	2 cut(s)	236, 410
AgsI	TTSAA	1 cut(s)	554
AjnI	CCWGG	1 cut(s)	95
AluBI	AGCT	1 cut(s)	199
AluI	AGCT	1 cut(s)	199
Alw21I	GWGCWC	1 cut(s)	201
Alw26I	GTCTC	1 cut(s)	316
AoxI	GGCC	1 cut(s)	93
AspLEI	GCGC	1 cut(s)	162
AsuHPI	GGTGA	4 cut(s)	41, 95, 431, 514
AxyI	CCTNAGG	2 cut(s)	249, 588
BanI	GGYRCC	1 cut(s)	263
BanII	GRGCYC	1 cut(s)	201
BbsI	GAAGAC	1 cut(s)	633
Bbv12I	GWGCWC	1 cut(s)	201
BccI	CCATC	1 cut(s)	64
BciT130I	CCWGG	1 cut(s)	97
BciVI	GTATCC	1 cut(s)	355
BcoDI	GTCTC	1 cut(s)	316
BfuAI	ACCTGC	1 cut(s)	316
BfuI	GTATCC	1 cut(s)	355
BisI	GCNGC	4 cut(s)	93, 123, 136, 158
BlpI	GCTNAGC	1 cut(s)	180
BlsI	GCNGC	4 cut(s)	94, 124, 137, 159
Bme1390I	CCNGG	1 cut(s)	97
BmiI	GGNNCC	2 cut(s)	68, 265
BmrFI	CCNGG	1 cut(s)	97
BmrI	ACTGGG	1 cut(s)	613
BmuI	ACTGGG	1 cut(s)	613
BpiI	GAAGAC	1 cut(s)	633
Bpu1102I	GCTNAGC	1 cut(s)	180
BsaI	GGTCTC	1 cut(s)	316
BsaJI	CCNNGG	2 cut(s)	133, 415
Bse1I	ACTGG	1 cut(s)	608
Bse21I	CCTNAGG	2 cut(s)	249, 588
Bse3DI	GCAATG	1 cut(s)	177
BseBI	CCWGG	1 cut(s)	97
BseDI	CCNNGG	2 cut(s)	133, 415
BseGI	GGATG	3 cut(s)	575, 598, 616
BseMI	GCAATG	1 cut(s)	177
BseMII	CTCAG	3 cut(s)	240, 447, 602
BseNI	ACTGG	1 cut(s)	608
BseRI	GAGGAG	1 cut(s)	575
BseYI	CCCAGC	1 cut(s)	386
Bsh1236I	CGCG	3 cut(s)	35, 135, 160
Bsh1285I	CGRYCG	1 cut(s)	271
BshFI	GGCC	1 cut(s)	95
BshNI	GGYRCC	1 cut(s)	263
BsiEI	CGRYCG	1 cut(s)	271
BsiHKAI	GWGCWC	1 cut(s)	201
BsmAI	GTCTC	1 cut(s)	316
BsnI	GGCC	1 cut(s)	95
Bso31I	GGTCTC	1 cut(s)	316
Bsp1286I	GDGCHC	1 cut(s)	201
Bsp143I	GATC	1 cut(s)	517
Bsp1720I	GCTNAGC	1 cut(s)	180
BspACI	CCGC	6 cut(s)	92, 122, 133, 135, 158, 445
BspANI	GGCC	1 cut(s)	95
BspCNI	CTCAG	3 cut(s)	241, 448, 601
BspFNI	CGCG	3 cut(s)	35, 135, 160
BspLI	GGNNCC	2 cut(s)	68, 265
BspMI	ACCTGC	1 cut(s)	316
BspT107I	GGYRCC	1 cut(s)	263
BspTNI	GGTCTC	1 cut(s)	316
BsrDI	GCAATG	1 cut(s)	177
BsrI	ACTGG	1 cut(s)	608
BssECI	CCNNGG	2 cut(s)	133, 415
BssMI	GATC	1 cut(s)	517
Bst2UI	CCWGG	1 cut(s)	97
Bst4CI	ACNGT	1 cut(s)	272
Bst6I	CTCTTC	1 cut(s)	286
BstAPI	GCANNNNNTGC	1 cut(s)	144
BstC8I	GCNNGC	1 cut(s)	90
BstDEI	CTNAG	4 cut(s)	180, 249, 456, 588
BstDSI	CCRYGG	2 cut(s)	133, 415
BstF5I	GGATG	3 cut(s)	575, 598, 616
BstFNI	CGCG	3 cut(s)	35, 135, 160
BstHHI	GCGC	1 cut(s)	162
BstKTI	GATC	1 cut(s)	520
BstMAI	GTCTC	1 cut(s)	316
BstMBI	GATC	1 cut(s)	517
BstMCI	CGRYCG	1 cut(s)	271
BstMWI	GCNNNNNNNGC	2 cut(s)	144, 176
BstNI	CCWGG	1 cut(s)	97
BstNSI	RCATGY	1 cut(s)	211
BstSCI	CCNGG	1 cut(s)	95
BstUI	CGCG	3 cut(s)	35, 135, 160
BstV2I	GAAGAC	1 cut(s)	633
BstXI	CCANNNNNNTGG	1 cut(s)	96
Bsu36I	CCTNAGG	2 cut(s)	249, 588
BsuI	GTATCC	1 cut(s)	355
BsuRI	GGCC	1 cut(s)	95
BtgI	CCRYGG	2 cut(s)	133, 415
BtgZI	GCGATG	1 cut(s)	372
BtsCI	GGATG	3 cut(s)	575, 598, 616
BveI	ACCTGC	1 cut(s)	316
Cac8I	GCNNGC	1 cut(s)	90
CfoI	GCGC	1 cut(s)	162
Cfr42I	CCGCGG	1 cut(s)	136
CseI	GACGC	1 cut(s)	24
Csp6I	GTAC	2 cut(s)	235, 409
CviAII	CATG	2 cut(s)	148, 208
CviJI	RGCY	8 cut(s)	24, 88, 95, 125, 157, 179, 199, 391
CviKI_1	RGCY	8 cut(s)	24, 88, 95, 125, 157, 179, 199, 391
CviQI	GTAC	2 cut(s)	235, 409
DdeI	CTNAG	4 cut(s)	180, 249, 456, 588
DpnI	GATC	1 cut(s)	519
DpnII	GATC	1 cut(s)	517
Eam1104I	CTCTTC	1 cut(s)	286
EarI	CTCTTC	1 cut(s)	286
Ecl136II	GAGCTC	1 cut(s)	199
Eco24I	GRGCYC	1 cut(s)	201
Eco31I	GGTCTC	1 cut(s)	316
Eco53kI	GAGCTC	1 cut(s)	199
Eco81I	CCTNAGG	2 cut(s)	249, 588
EcoICRI	GAGCTC	1 cut(s)	199
EcoRII	CCWGG	1 cut(s)	95
EcoT38I	GRGCYC	1 cut(s)	201
FaeI	CATG	2 cut(s)	151, 211
FaiI	YATR	9 cut(s)	7, 140, 149, 209, 437, 470, 635, 637, 641
FatI	CATG	2 cut(s)	147, 207
Fnu4HI	GCNGC	4 cut(s)	93, 123, 136, 158
FokI	GGATG	3 cut(s)	562, 605, 623
FriOI	GRGCYC	1 cut(s)	201
Fsp4HI	GCNGC	4 cut(s)	93, 123, 136, 158
GlaI	GCGC	1 cut(s)	161
GluI	GCNGC	4 cut(s)	93, 123, 136, 158
GsaI	CCCAGC	1 cut(s)	390
HaeIII	GGCC	1 cut(s)	95
HgaI	GACGC	1 cut(s)	24
HhaI	GCGC	1 cut(s)	162
Hin1II	CATG	2 cut(s)	151, 211
Hin6I	GCGC	1 cut(s)	160
HinP1I	GCGC	1 cut(s)	160
HincII	GTYRAC	1 cut(s)	450
HindII	GTYRAC	1 cut(s)	450
HinfI	GANTC	3 cut(s)	100, 479, 572
HpaI	GTTAAC	1 cut(s)	450
HphI	GGTGA	4 cut(s)	41, 95, 431, 514
Hpy166II	GTNNAC	1 cut(s)	450
Hpy188I	TCNGA	3 cut(s)	78, 205, 522
Hpy188III	TCNNGA	3 cut(s)	455, 554, 590
Hpy8I	GTNNAC	1 cut(s)	450
HpyAV	CCTTC	4 cut(s)	49, 62, 364, 423
HpyCH4III	ACNGT	1 cut(s)	272
HpyCH4IV	ACGT	1 cut(s)	411
HpyCH4V	TGCA	5 cut(s)	147, 232, 325, 380, 509
HpyF10VI	GCNNNNNNNGC	2 cut(s)	144, 176
HpyF3I	CTNAG	4 cut(s)	180, 249, 456, 588
HpySE526I	ACGT	1 cut(s)	411
Hsp92II	CATG	2 cut(s)	151, 211
HspAI	GCGC	1 cut(s)	160
KspAI	GTTAAC	1 cut(s)	450
KspI	CCGCGG	1 cut(s)	136
Kzo9I	GATC	1 cut(s)	517
LmnI	GCTCC	2 cut(s)	135, 196
MaeII	ACGT	1 cut(s)	411
MaeIII	GTNAC	2 cut(s)	47, 272
MalI	GATC	1 cut(s)	519
MboI	GATC	1 cut(s)	517
MboII	GAAGA	4 cut(s)	273, 485, 547, 638
MhlI	GDGCHC	1 cut(s)	201
MluCI	AATT	4 cut(s)	72, 294, 422, 566
MmeI	TCCRAC	2 cut(s)	523, 603
MseI	TTAA	4 cut(s)	215, 287, 333, 449
MspA1I	CMGCKG	2 cut(s)	92, 135
MspR9I	CCNGG	1 cut(s)	97
MvaI	CCWGG	1 cut(s)	97
MvnI	CGCG	3 cut(s)	35, 135, 160
MwoI	GCNNNNNNNGC	2 cut(s)	144, 176
NdeII	GATC	1 cut(s)	517
NlaIII	CATG	2 cut(s)	151, 211
NlaIV	GGNNCC	2 cut(s)	68, 265
NmuCI	GTSAC	1 cut(s)	47
NspI	RCATGY	1 cut(s)	211
PaqCI	CACCTGC	1 cut(s)	316
PfeI	GAWTC	3 cut(s)	100, 479, 572
PkrI	GCNGC	4 cut(s)	94, 124, 137, 159
Psp124BI	GAGCTC	1 cut(s)	201
Psp6I	CCWGG	1 cut(s)	95
PspFI	CCCAGC	1 cut(s)	386
PspGI	CCWGG	1 cut(s)	95
PspN4I	GGNNCC	2 cut(s)	68, 265
RsaI	GTAC	2 cut(s)	236, 410
RsaNI	GTAC	2 cut(s)	235, 409
SacI	GAGCTC	1 cut(s)	201
SacII	CCGCGG	1 cut(s)	136
SaqAI	TTAA	4 cut(s)	215, 287, 333, 449
SatI	GCNGC	4 cut(s)	93, 123, 136, 158
Sau3AI	GATC	1 cut(s)	517
ScrFI	CCNGG	1 cut(s)	97
SduI	GDGCHC	1 cut(s)	201
Sfr303I	CCGCGG	1 cut(s)	136
SgrBI	CCGCGG	1 cut(s)	136
Sse9I	AATT	4 cut(s)	72, 294, 422, 566
SsiI	CCGC	6 cut(s)	92, 122, 133, 135, 158, 445
SspI	AATATT	1 cut(s)	513
SstI	GAGCTC	1 cut(s)	201
StyD4I	CCNGG	1 cut(s)	95
TaaI	ACNGT	1 cut(s)	272
TaiI	ACGT	1 cut(s)	414
TasI	AATT	4 cut(s)	72, 294, 422, 566
TauI	GCSGC	4 cut(s)	95, 125, 138, 160
TfiI	GAWTC	3 cut(s)	100, 479, 572
Tru1I	TTAA	4 cut(s)	215, 287, 333, 449
Tru9I	TTAA	4 cut(s)	215, 287, 333, 449
TseFI	GTSAC	1 cut(s)	47
Tsp45I	GTSAC	1 cut(s)	47
TspDTI	ATGAA	5 cut(s)	375, 452, 457, 492, 639
TspGWI	ACGGA	2 cut(s)	337, 404
XceI	RCATGY	1 cut(s)	211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.