Rh6CG270400

Quinone-oxidoreductase homolog, chloroplastic

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
Physical Location & Seq
Forward (+)
44495964 .. 44497438
1475 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG270400.1

Sequence Viewer

Length: 993 bp
ATGGCAGCAAAGCTTATGCATGCGGTTCAGTACGACAGTTATGGTGGAGGACCTTCTGGTTTAAAGCATGTTCAAGTTCCAATCCCATCTCCAAAGAAAAATGAGGTTTTGCTCAAGTTGGAAGCAGCAAGTCTAAATCCAGGTGATTGTAAGATTCAGAAAGGCATGGCGTGGCCTCTTTTCCCTCGCAAGTTGCCTCACATTCCTGTAACTGATGTGGCTGGAGAGGTTGTAGAGGTGGGACTGGGAGTCACAAAGTTCAAAGTGGGTGACAAAGTTGTGGCAATGCTCAGCTATGGTAATGGAGGTGGACTTGGTGAGTTTGCGGCAGCTAATGAGAAATTGGTAGTTTCTAGGCCTCTTGAAGTGTCAGCAGCAGACGGCGCAGGCTTACCGGTTGCTGCTCTTACAGCTCACCAGGCTCTCACCAAAGATGCAGGGATCAAGCTTGATGGAACAAGCCAGCAGAAGAACATACTCATTACCGGTGCCTCAGGTAACGTCGGTCTCTATGCAATCCAACTAGCAAAGCTCGGAAATGCTCATGTCACCGCCACTTGTGGAGCTCGTAACATTGAACTAGTCAAGAGCTTAGGGGCAGATGAGGTTCTTGACTACAAGACCCCTGAAGGGGCAGCTGTCAAGAGCCCATCTGGTCGGACATATGATTTTGTGATCCATTCTTCATCAAAAGCAATTCCTTGGTCAGTCTTTGAGCCGAATTTGAGCTCAAATGGGAAAGTTATAGACCTTACTGCCGGCCTCAGCTCCTTGTTTACTTTTGTTCTTAAGAAACTCACCTTCTCCAAGAAGAAGCTGGTGCCATTGATCATAAATGCGAAGGGTGAGAACCTGGATTGTCTTGTTAAGTTGGTGAAGGAAGGAAAGCTCAAGACTGTGACTGACTCAAATTTTCCTCTAAGCAAAGCTGAAGATGCTTGGGCTAAAAGACTTGATGGCTACAATACAGGGAAGATCATTGTGGAGCATTAG

Protein Analysis

330

Amino Acids

34.77

Weight (kDa)

9.24

Isoelectric Point (pI)

22.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 33 - 118 1.2e-14 Alcohol dehydrogenase GroES-like domain
ADH_zinc_N PF00107 168 - 279 2.5e-09 Zinc-binding dehydrogenase
ADH_zinc_N_2 PF13602 198 - 328 2.9e-16 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000313)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G13010
fragaria_vesca FvH4_2g18240 FvH4_2g18280 FvH4_2g18310 FvH4_2g18320 FvH4_2g18330 FvH4_2g18340 FvH4_2g18350
malus_domestica MD05G1166800.v1.1 MD05G1167200.v1.1 MD05G1167300.v1.1 MD05G1167400.v1.1 MD05G1167600.v1.1 MD05G1168000.v1.1 MD05G1168200.v1.1 MD05G1168400.v1.1 MD05G1168600.v1.1 MD05G1168700.v1.1 MD05G1168800.v1.1 MD10G1156900.v1.1 MD10G1157000.v1.1 MD10G1157100.v1.1 MD10G1157200.v1.1
prunus_persica Prupe.8G195100_v2.0.a1 Prupe.8G195100_v2.0.a1 Prupe.8G195300_v2.0.a1 Prupe.8G195600_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G196000_v2.0.a1 Prupe.8G196000_v2.0.a1
pyrus_communis pycom05g15560 pycom05g15600 pycom05g15610 pycom05g15620 pycom05g15630 pycom10g13550 pycom10g13570
rosa_chinensis RchiOBHm_Chr6g0283611 RchiOBHm_Chr6g0283631 RchiOBHm_Chr6g0283641 RchiOBHm_Chr6g0283661 RchiOBHm_Chr6g0283681 RchiOBHm_Chr6g0283691 RchiOBHm_Chr6g0283701 RchiOBHm_Chr6g0283711 RchiOBHm_Chr6g0283721
rosa_laevigata RLG00000012804 RLG00000012807 RLG00000012811
rosa_multiflora Rmu_co8263921.1_g000001 Rmu_sc0001521.1_g000009 Rmu_sc0002906.1_g000002 Rmu_sc0002906.1_g000011 Rmu_sc0002906.1_g000013 Rmu_sc0005719.1_g000016 Rmu_sc0005719.1_g000022 Rmu_sc0029460.1_g000001
rosa_roxburghii Rroxscaffold_7G00185240 Rroxscaffold_7G00185250 Rroxscaffold_7G00185270 Rroxscaffold_7G00185280 Rroxscaffold_7G00185290 Rroxscaffold_7G00185330 Rroxscaffold_7G00185350
rosa_rugosa Rorug06G0156100 Rorug06G0156300 Rorug06G0156400 Rorug06G0156500 Rorug06G0156600 Rorug06G0156700 Rorug06G0156800 Rorug06G0156900 Rorug06G0157000
rosa_samantha Rh6AG267900 Rh6AG268100 Rh6AG268200 Rh6AG268400 Rh6AG268600 Rh6AG268700 Rh6AG268900 Rh6AG269100 Rh6BG270700 Rh6BG270900 Rh6BG271000 Rh6BG271200 Rh6BG271400 Rh6BG271500 Rh6CG270200 Rh6CG270400 Rh6CG270500 Rh6CG270800 Rh6CG270900 Rh6CG271000 Rh6CG271100 Rh6CG271300 Rh6DG263900 Rh6DG264100 Rh6DG264200 Rh6DG264400 Rh6DG264600 Rh6DG264800 Rh6DG265200
rosa_wichuraiana Rw6G023210 Rw6G023220 Rw6G023230 Rw6G023240 Rw6G023250 Rw6G023260 Rw6G023270 Rw6G023280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 488, 820
AciI CCGC 3 cut(s) 23, 326, 552
AclWI GGATC 2 cut(s) 449, 670
AcsI RAATTY 2 cut(s) 721, 910
AcuI CTGAAG 2 cut(s) 648, 951
AfaI GTAC 1 cut(s) 32
AfiI CCNNNNNNNGG 2 cut(s) 630, 631
AflII CTTAAG 1 cut(s) 788
AgeI ACCGGT 2 cut(s) 394, 485
AgsI TTSAA 4 cut(s) 74, 262, 365, 578
AhdI GACNNNNNGTC 1 cut(s) 248
AhlI ACTAGT 1 cut(s) 580
AjnI CCWGG 3 cut(s) 139, 417, 852
Alw21I GWGCWC 2 cut(s) 568, 731
Alw26I GTCTC 1 cut(s) 512
AlwI GGATC 2 cut(s) 449, 670
AoxI GGCC 3 cut(s) 173, 356, 760
ApeKI GCWGC 6 cut(s) 5, 125, 329, 374, 401, 635
ApoI RAATTY 2 cut(s) 721, 910
AsiGI ACCGGT 2 cut(s) 394, 485
AspLEI GCGC 1 cut(s) 386
AspS9I GGNCC 1 cut(s) 50
AsuHPI GGTGA 9 cut(s) 155, 281, 329, 407, 418, 541, 790, 857, 886
AvaII GGWCC 1 cut(s) 50
AxyI CCTNAGG 1 cut(s) 493
BanI GGYRCC 2 cut(s) 488, 820
BanII GRGCYC 3 cut(s) 568, 650, 731
Bbv12I GWGCWC 2 cut(s) 568, 731
BbvCI CCTCAGC 1 cut(s) 764
BbvI GCAGC 6 cut(s) 17, 137, 341, 386, 388, 647
BccI CCATC 4 cut(s) 94, 446, 658, 950
BceAI ACGGC 1 cut(s) 397
BciT130I CCWGG 3 cut(s) 141, 419, 854
BclI TGATCA 1 cut(s) 828
BcoDI GTCTC 1 cut(s) 512
BcuI ACTAGT 1 cut(s) 580
BfaI CTAG 3 cut(s) 354, 524, 581
BfrI CTTAAG 1 cut(s) 788
BisI GCNGC 7 cut(s) 6, 126, 327, 330, 375, 402, 636
BlpI GCTNAGC 1 cut(s) 290
BlsI GCNGC 7 cut(s) 7, 127, 328, 331, 376, 403, 637
Bme1390I CCNGG 3 cut(s) 141, 419, 854
Bme18I GGWCC 1 cut(s) 50
BmeRI GACNNNNNGTC 1 cut(s) 248
BmgT120I GGNCC 1 cut(s) 50
BmiI GGNNCC 2 cut(s) 490, 822
BmrFI CCNGG 3 cut(s) 141, 419, 854
BmrI ACTGGG 1 cut(s) 254
BmsI GCATC 2 cut(s) 424, 925
BmuI ACTGGG 1 cut(s) 254
BpmI CTGGAG 1 cut(s) 243
Bpu10I CCTNAGC 2 cut(s) 592, 764
Bpu1102I GCTNAGC 1 cut(s) 290
BpuEI CTTGAG 2 cut(s) 98, 875
BsaI GGTCTC 1 cut(s) 512
BsaJI CCNNGG 1 cut(s) 701
BsaWI WCCGGW 2 cut(s) 394, 485
BsaXI ACNNNNNCTCC 2 cut(s) 216, 246
Bsc4I CCNNNNNNNGG 2 cut(s) 630, 631
Bse118I RCCGGY 3 cut(s) 394, 485, 758
Bse1I ACTGG 1 cut(s) 249
Bse21I CCTNAGG 1 cut(s) 493
Bse3DI GCAATG 1 cut(s) 291
BseBI CCWGG 3 cut(s) 141, 419, 854
BseDI CCNNGG 1 cut(s) 701
BseLI CCNNNNNNNGG 2 cut(s) 630, 631
BseMI GCAATG 1 cut(s) 291
BseMII CTCAG 3 cut(s) 304, 507, 778
BseNI ACTGG 1 cut(s) 249
BseXI GCAGC 6 cut(s) 17, 137, 341, 386, 388, 647
BshFI GGCC 3 cut(s) 175, 358, 762
BshNI GGYRCC 2 cut(s) 488, 820
BshTI ACCGGT 2 cut(s) 394, 485
BsiHKAI GWGCWC 2 cut(s) 568, 731
BsiSI CCGG 3 cut(s) 395, 486, 759
BslFI GGGAC 1 cut(s) 255
BslI CCNNNNNNNGG 2 cut(s) 630, 631
BsmAI GTCTC 1 cut(s) 512
BsmFI GGGAC 1 cut(s) 255
BsnI GGCC 3 cut(s) 175, 358, 762
Bso31I GGTCTC 1 cut(s) 512
Bsp1286I GDGCHC 3 cut(s) 568, 650, 731
Bsp143I GATC 4 cut(s) 441, 675, 828, 975
Bsp1720I GCTNAGC 1 cut(s) 290
BspACI CCGC 3 cut(s) 23, 326, 552
BspANI GGCC 3 cut(s) 175, 358, 762
BspCNI CTCAG 3 cut(s) 303, 506, 777
BspLI GGNNCC 2 cut(s) 490, 822
BspPI GGATC 2 cut(s) 449, 670
BspT107I GGYRCC 2 cut(s) 488, 820
BspTI CTTAAG 1 cut(s) 788
BspTNI GGTCTC 1 cut(s) 512
BsrDI GCAATG 1 cut(s) 291
BsrFI RCCGGY 3 cut(s) 394, 485, 758
BsrI ACTGG 1 cut(s) 249
BssAI RCCGGY 3 cut(s) 394, 485, 758
BssECI CCNNGG 1 cut(s) 701
BssMI GATC 4 cut(s) 441, 675, 828, 975
BssT1I CCWWGG 1 cut(s) 701
Bst2UI CCWGG 3 cut(s) 141, 419, 854
Bst4CI ACNGT 2 cut(s) 38, 898
BstAFI CTTAAG 1 cut(s) 788
BstC8I GCNNGC 4 cut(s) 21, 388, 464, 760
BstDEI CTNAG 5 cut(s) 290, 493, 592, 764, 920
BstHHI GCGC 1 cut(s) 386
BstKTI GATC 4 cut(s) 444, 678, 831, 978
BstMAI GTCTC 1 cut(s) 512
BstMBI GATC 4 cut(s) 441, 675, 828, 975
BstMWI GCNNNNNNNGC 4 cut(s) 383, 410, 419, 935
BstNI CCWGG 3 cut(s) 141, 419, 854
BstNSI RCATGY 2 cut(s) 23, 71
BstSCI CCNGG 3 cut(s) 139, 417, 852
BstV1I GCAGC 6 cut(s) 17, 137, 341, 386, 388, 647
Bsu36I CCTNAGG 1 cut(s) 493
BsuRI GGCC 3 cut(s) 175, 358, 762
Cac8I GCNNGC 4 cut(s) 21, 388, 464, 760
CfoI GCGC 1 cut(s) 386
Cfr10I RCCGGY 3 cut(s) 394, 485, 758
Cfr13I GGNCC 1 cut(s) 50
Csp6I GTAC 1 cut(s) 31
CspAI ACCGGT 2 cut(s) 394, 485
CviAII CATG 4 cut(s) 20, 68, 166, 545
CviQI GTAC 1 cut(s) 31
DdeI CTNAG 5 cut(s) 290, 493, 592, 764, 920
DpnI GATC 4 cut(s) 443, 677, 830, 977
DpnII GATC 4 cut(s) 441, 675, 828, 975
DraI TTTAAA 1 cut(s) 63
DriI GACNNNNNGTC 1 cut(s) 248
Eam1105I GACNNNNNGTC 1 cut(s) 248
Ecl136II GAGCTC 2 cut(s) 566, 729
Eco130I CCWWGG 1 cut(s) 701
Eco147I AGGCCT 1 cut(s) 358
Eco24I GRGCYC 3 cut(s) 568, 650, 731
Eco31I GGTCTC 1 cut(s) 512
Eco47I GGWCC 1 cut(s) 50
Eco53kI GAGCTC 2 cut(s) 566, 729
Eco57I CTGAAG 2 cut(s) 648, 951
Eco81I CCTNAGG 1 cut(s) 493
EcoICRI GAGCTC 2 cut(s) 566, 729
EcoO109I RGGNCCY 1 cut(s) 50
EcoRII CCWGG 3 cut(s) 139, 417, 852
EcoT14I CCWWGG 1 cut(s) 701
EcoT22I ATGCAT 1 cut(s) 21
EcoT38I GRGCYC 3 cut(s) 568, 650, 731
ErhI CCWWGG 1 cut(s) 701
FaeI CATG 4 cut(s) 23, 71, 169, 548
FaqI GGGAC 1 cut(s) 255
FatI CATG 4 cut(s) 19, 67, 165, 544
FauNDI CATATG 1 cut(s) 664
FbaI TGATCA 1 cut(s) 828
Fnu4HI GCNGC 7 cut(s) 6, 126, 327, 330, 375, 402, 636
FriOI GRGCYC 3 cut(s) 568, 650, 731
Fsp4HI GCNGC 7 cut(s) 6, 126, 327, 330, 375, 402, 636
FspBI CTAG 3 cut(s) 354, 524, 581
GlaI GCGC 1 cut(s) 385
GluI GCNGC 7 cut(s) 6, 126, 327, 330, 375, 402, 636
GsuI CTGGAG 1 cut(s) 243
HaeIII GGCC 3 cut(s) 175, 358, 762
HapII CCGG 3 cut(s) 395, 486, 759
HhaI GCGC 1 cut(s) 386
Hin1II CATG 4 cut(s) 23, 71, 169, 548
Hin6I GCGC 1 cut(s) 384
HinP1I GCGC 1 cut(s) 384
HindIII AAGCTT 2 cut(s) 11, 446
HinfI GANTC 3 cut(s) 154, 249, 905
HpaII CCGG 3 cut(s) 395, 486, 759
HphI GGTGA 9 cut(s) 155, 281, 329, 407, 418, 541, 790, 857, 886
Hpy166II GTNNAC 2 cut(s) 311, 777
Hpy188I TCNGA 3 cut(s) 159, 536, 660
Hpy188III TCNNGA 5 cut(s) 362, 586, 611, 643, 892
Hpy8I GTNNAC 2 cut(s) 311, 777
Hpy99I CGWCG 1 cut(s) 506
HpyAV CCTTC 6 cut(s) 63, 623, 811, 835, 871, 875
HpyCH4III ACNGT 2 cut(s) 38, 898
HpyCH4IV ACGT 1 cut(s) 501
HpyCH4V TGCA 3 cut(s) 19, 437, 515
HpyF10VI GCNNNNNNNGC 4 cut(s) 383, 410, 419, 935
HpyF3I CTNAG 5 cut(s) 290, 493, 592, 764, 920
HpySE526I ACGT 1 cut(s) 501
Hsp92II CATG 4 cut(s) 23, 71, 169, 548
HspAI GCGC 1 cut(s) 384
KroI GCCGGC 1 cut(s) 758
KroNI GCCGGC 1 cut(s) 760
Ksp22I TGATCA 1 cut(s) 828
Kzo9I GATC 4 cut(s) 441, 675, 828, 975
LmnI GCTCC 3 cut(s) 563, 773, 985
Lsp1109I GCAGC 6 cut(s) 17, 137, 341, 386, 388, 647
LweI GCATC 2 cut(s) 424, 925
MaeI CTAG 3 cut(s) 354, 524, 581
MaeII ACGT 1 cut(s) 501
MaeIII GTNAC 7 cut(s) 208, 250, 269, 497, 547, 569, 898
MalI GATC 4 cut(s) 443, 677, 830, 977
MboI GATC 4 cut(s) 441, 675, 828, 975
MboII GAAGA 5 cut(s) 481, 675, 823, 944, 985
MhlI GDGCHC 3 cut(s) 568, 650, 731
MluCI AATT 4 cut(s) 341, 696, 721, 910
MlyI GAGTC 2 cut(s) 258, 899
MmeI TCCRAC 3 cut(s) 99, 544, 638
Mph1103I ATGCAT 1 cut(s) 21
MroNI GCCGGC 1 cut(s) 758
MseI TTAA 3 cut(s) 62, 789, 867
MspA1I CMGCKG 1 cut(s) 638
MspCI CTTAAG 1 cut(s) 788
MspI CCGG 3 cut(s) 395, 486, 759
MspR9I CCNGG 3 cut(s) 141, 419, 854
MvaI CCWGG 3 cut(s) 141, 419, 854
MwoI GCNNNNNNNGC 4 cut(s) 383, 410, 419, 935
NaeI GCCGGC 1 cut(s) 760
NdeI CATATG 1 cut(s) 664
NdeII GATC 4 cut(s) 441, 675, 828, 975
NgoMIV GCCGGC 1 cut(s) 758
NlaIII CATG 4 cut(s) 23, 71, 169, 548
NlaIV GGNNCC 2 cut(s) 490, 822
NmuCI GTSAC 4 cut(s) 250, 269, 547, 898
NsiI ATGCAT 1 cut(s) 21
NspI RCATGY 2 cut(s) 23, 71
PaeI GCATGC 1 cut(s) 23
PceI AGGCCT 1 cut(s) 358
PdiI GCCGGC 1 cut(s) 760
PfeI GAWTC 1 cut(s) 154
PinAI ACCGGT 2 cut(s) 394, 485
PkrI GCNGC 7 cut(s) 7, 127, 328, 331, 376, 403, 637
PleI GAGTC 2 cut(s) 257, 899
PpsI GAGTC 2 cut(s) 257, 899
PpuMI RGGWCCY 1 cut(s) 50
Psp124BI GAGCTC 2 cut(s) 568, 731
Psp5II RGGWCCY 1 cut(s) 50
Psp6I CCWGG 3 cut(s) 139, 417, 852
PspGI CCWGG 3 cut(s) 139, 417, 852
PspN4I GGNNCC 2 cut(s) 490, 822
PspPI GGNCC 1 cut(s) 50
PspPPI RGGWCCY 1 cut(s) 50
PvuII CAGCTG 1 cut(s) 638
RsaI GTAC 1 cut(s) 32
RsaNI GTAC 1 cut(s) 31
SacI GAGCTC 2 cut(s) 568, 731
SaqAI TTAA 3 cut(s) 62, 789, 867
SatI GCNGC 7 cut(s) 6, 126, 327, 330, 375, 402, 636
Sau3AI GATC 4 cut(s) 441, 675, 828, 975
Sau96I GGNCC 1 cut(s) 50
SchI GAGTC 2 cut(s) 258, 899
ScrFI CCNGG 3 cut(s) 141, 419, 854
SduI GDGCHC 3 cut(s) 568, 650, 731
SfaNI GCATC 2 cut(s) 424, 925
SinI GGWCC 1 cut(s) 50
SmlI CTYRAG 3 cut(s) 113, 788, 890
SmoI CTYRAG 3 cut(s) 113, 788, 890
SpeI ACTAGT 1 cut(s) 580
SphI GCATGC 1 cut(s) 23
Sse9I AATT 4 cut(s) 341, 696, 721, 910
SseBI AGGCCT 1 cut(s) 358
SsiI CCGC 3 cut(s) 23, 326, 552
SspMI CTAG 3 cut(s) 354, 524, 581
SstI GAGCTC 2 cut(s) 568, 731
StuI AGGCCT 1 cut(s) 358
StyD4I CCNGG 3 cut(s) 139, 417, 852
StyI CCWWGG 1 cut(s) 701
TaaI ACNGT 2 cut(s) 38, 898
TaiI ACGT 1 cut(s) 504
TaqII GACCGA 1 cut(s) 494
TasI AATT 4 cut(s) 341, 696, 721, 910
TauI GCSGC 1 cut(s) 329
TfiI GAWTC 1 cut(s) 154
Tru1I TTAA 3 cut(s) 62, 789, 867
Tru9I TTAA 3 cut(s) 62, 789, 867
TseFI GTSAC 4 cut(s) 250, 269, 547, 898
TseI GCWGC 6 cut(s) 5, 125, 329, 374, 401, 635
Tsp45I GTSAC 4 cut(s) 250, 269, 547, 898
TspDTI ATGAA 1 cut(s) 675
Vha464I CTTAAG 1 cut(s) 788
VpaK11BI GGWCC 1 cut(s) 50
XapI RAATTY 2 cut(s) 721, 910
XceI RCATGY 2 cut(s) 23, 71
XcmI CCANNNNNNNNNTGG 1 cut(s) 814
XspI CTAG 3 cut(s) 354, 524, 581
Zsp2I ATGCAT 1 cut(s) 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.