Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0000313

Physical Location & Seq

Genomic Coordinates Forward (+)

44486343 .. 44488135

Gene Structure 1793 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG270200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGGCAGAAATGGCTGCAAAGCTTATGCATGCTGTTCAGTATGAAAACTATGGTGGAGGGCTTTCTGGTTTGAAGCATGTAGAGATTCCAATCCCCAGTCCTAAGAGAGATGAGGCACGCTGCGTCCTCTTGTTCCACGCAAATTCCCTTTTATACCTGGATGGAGGTGGACTGGCTGAGTTTGCTACAGCTAGTGAGAAATTGACAGTTGCTAGGCCCCAAGAAATTTCAGCAGCTGAAGGTGCAGGCTTACCTACTTGTGGTCTCACAGCTCACCAGGCTCTAACACAAGCTGGAGAGATCGAGCTTGATGGAACTGGCCAGCTGAAGAGCATACTCATTACTGGTGCTTCTGGTGGTGTTGGCCATTATGCAGTCCAACTAGCAAAGCTGGTGAACGCTCATGTGACAGTGACTTGTGGAGCTCGTAACATCGAATTTGTCAAGAGATTGGGGGCTGATGAAGTTCTCGACTACAGTACCCCAGATGGGGCAGCTTTAAGGAGTCCATCTGGTCGAAAGTATGATGTGGTAATTCACTGTGCACCTGTTACTATTCCATGGTCAATTTTTGAGCCAAATCTGACTCTAAATGGTAAAGTAATAGACATTACTCCCAGCGCAAGTGCCTTTATTACTTTTGTTCGAAACACAGTTACCTTCTCCAAGAAGAAGCTGGTGCCTTTGATCATAAATGCCAAGGCTGAAAACCTTGATTATCTTTTGCTGTTAGTGAAGGAAGGAAAGCTGAAGACAGTGATCGACTCAAAGCATTCTCTAAGCAAGGCTGAAGATGCCTGGGCTAAAAGTATGGATGGTCATGCTACTGGGAAGATCATTTTAGAGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N_2

Protein Analysis

283

Amino Acids

30.07

Weight (kDa)

6.76

Isoelectric Point (pI)

32.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_zinc_N	PF00107	120 - 183	5.2e-11	Zinc-binding dehydrogenase
ADH_zinc_N_2	PF13602	151 - 281	3.4e-19	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13010
fragaria_vesca	FvH4_2g18240 FvH4_2g18280 FvH4_2g18310 FvH4_2g18320 FvH4_2g18330 FvH4_2g18340 FvH4_2g18350
malus_domestica	MD05G1166800.v1.1 MD05G1167200.v1.1 MD05G1167300.v1.1 MD05G1167400.v1.1 MD05G1167600.v1.1 MD05G1168000.v1.1 MD05G1168200.v1.1 MD05G1168400.v1.1 MD05G1168600.v1.1 MD05G1168700.v1.1 MD05G1168800.v1.1 MD10G1156900.v1.1 MD10G1157000.v1.1 MD10G1157100.v1.1 MD10G1157200.v1.1
prunus_persica	Prupe.8G195100_v2.0.a1 Prupe.8G195100_v2.0.a1 Prupe.8G195300_v2.0.a1 Prupe.8G195600_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G196000_v2.0.a1 Prupe.8G196000_v2.0.a1
pyrus_communis	pycom05g15560 pycom05g15600 pycom05g15610 pycom05g15620 pycom05g15630 pycom10g13550 pycom10g13570
rosa_chinensis	RchiOBHm_Chr6g0283611 RchiOBHm_Chr6g0283631 RchiOBHm_Chr6g0283641 RchiOBHm_Chr6g0283661 RchiOBHm_Chr6g0283681 RchiOBHm_Chr6g0283691 RchiOBHm_Chr6g0283701 RchiOBHm_Chr6g0283711 RchiOBHm_Chr6g0283721
rosa_laevigata	RLG00000012804 RLG00000012807 RLG00000012811
rosa_multiflora	Rmu_co8263921.1_g000001 Rmu_sc0001521.1_g000009 Rmu_sc0002906.1_g000002 Rmu_sc0002906.1_g000011 Rmu_sc0002906.1_g000013 Rmu_sc0005719.1_g000016 Rmu_sc0005719.1_g000022 Rmu_sc0029460.1_g000001
rosa_roxburghii	Rroxscaffold_7G00185240 Rroxscaffold_7G00185250 Rroxscaffold_7G00185270 Rroxscaffold_7G00185280 Rroxscaffold_7G00185290 Rroxscaffold_7G00185330 Rroxscaffold_7G00185350
rosa_rugosa	Rorug06G0156100 Rorug06G0156300 Rorug06G0156400 Rorug06G0156500 Rorug06G0156600 Rorug06G0156700 Rorug06G0156800 Rorug06G0156900 Rorug06G0157000
rosa_samantha	Rh6AG267900 Rh6AG268100 Rh6AG268200 Rh6AG268400 Rh6AG268600 Rh6AG268700 Rh6AG268900 Rh6AG269100 Rh6BG270700 Rh6BG270900 Rh6BG271000 Rh6BG271200 Rh6BG271400 Rh6BG271500 Rh6CG270200 Rh6CG270400 Rh6CG270500 Rh6CG270800 Rh6CG270900 Rh6CG271000 Rh6CG271100 Rh6CG271300 Rh6DG263900 Rh6DG264100 Rh6DG264200 Rh6DG264400 Rh6DG264600 Rh6DG264800 Rh6DG265200
rosa_wichuraiana	Rw6G023210 Rw6G023220 Rw6G023230 Rw6G023240 Rw6G023250 Rw6G023260 Rw6G023270 Rw6G023280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	679
AcoI	YGGCCR	2 cut(s)	319, 364
AcsI	RAATTY	3 cut(s)	142, 225, 437
AcuI	CTGAAG	4 cut(s)	258, 347, 770, 810
AfaI	GTAC	1 cut(s)	481
AfiI	CCNNNNNNNGG	3 cut(s)	260, 489, 490
AgsI	TTSAA	1 cut(s)	73
AjnI	CCWGG	3 cut(s)	156, 276, 797
Alw21I	GWGCWC	2 cut(s)	427, 547
Alw26I	GTCTC	1 cut(s)	269
Alw44I	GTGCAC	1 cut(s)	543
AlwNI	CAGNNNCTG	1 cut(s)	236
AoxI	GGCC	3 cut(s)	215, 319, 364
ApaLI	GTGCAC	1 cut(s)	543
ApeKI	GCWGC	4 cut(s)	14, 120, 233, 494
ApoI	RAATTY	3 cut(s)	142, 225, 437
AspLEI	GCGC	1 cut(s)	623
AspS9I	GGNCC	1 cut(s)	216
AsuHPI	GGTGA	2 cut(s)	266, 406
AsuII	TTCGAA	1 cut(s)	646
BaeGI	GKGCMC	1 cut(s)	547
BaeI	ACNNNNGTAYC	2 cut(s)	463, 496
BalI	TGGCCA	2 cut(s)	321, 366
BanI	GGYRCC	1 cut(s)	679
BanII	GRGCYC	1 cut(s)	427
BbsI	GAAGAC	1 cut(s)	758
Bbv12I	GWGCWC	2 cut(s)	427, 547
BbvI	GCAGC	3 cut(s)	107, 245, 506
BccI	CCATC	5 cut(s)	155, 305, 482, 517, 809
BciT130I	CCWGG	3 cut(s)	158, 278, 799
BclI	TGATCA	1 cut(s)	687
BcoDI	GTCTC	1 cut(s)	269
BfaI	CTAG	3 cut(s)	192, 213, 383
BfmI	CTRYAG	2 cut(s)	186, 475
BisI	GCNGC	4 cut(s)	15, 121, 234, 495
BlsI	GCNGC	4 cut(s)	16, 122, 235, 496
Bme1390I	CCNGG	3 cut(s)	158, 278, 799
BmgT120I	GGNCC	1 cut(s)	216
BmiI	GGNNCC	2 cut(s)	218, 681
BmrFI	CCNGG	3 cut(s)	158, 278, 799
BmrI	ACTGGG	2 cut(s)	90, 837
BmsI	GCATC	1 cut(s)	784
BmuI	ACTGGG	2 cut(s)	90, 837
BpiI	GAAGAC	1 cut(s)	758
BpmI	CTGGAG	1 cut(s)	315
Bpu14I	TTCGAA	1 cut(s)	646
BsaBI	GATNNNNATC	1 cut(s)	89
BsaI	GGTCTC	1 cut(s)	269
BsaJI	CCNNGG	3 cut(s)	560, 699, 798
Bsc4I	CCNNNNNNNGG	3 cut(s)	260, 489, 490
Bse1I	ACTGG	5 cut(s)	96, 177, 322, 349, 832
Bse8I	GATNNNNATC	1 cut(s)	89
BseBI	CCWGG	3 cut(s)	158, 278, 799
BseDI	CCNNGG	3 cut(s)	560, 699, 798
BseGI	GGATG	2 cut(s)	166, 820
BseJI	GATNNNNATC	1 cut(s)	89
BseLI	CCNNNNNNNGG	3 cut(s)	260, 489, 490
BseMII	CTCAG	1 cut(s)	168
BseNI	ACTGG	5 cut(s)	96, 177, 322, 349, 832
BseSI	GKGCMC	1 cut(s)	547
BseXI	GCAGC	3 cut(s)	107, 245, 506
BseYI	CCCAGC	1 cut(s)	617
BsgI	GTGCAG	1 cut(s)	264
BshFI	GGCC	3 cut(s)	217, 321, 366
BshNI	GGYRCC	1 cut(s)	679
BsiHKAI	GWGCWC	2 cut(s)	427, 547
BslI	CCNNNNNNNGG	3 cut(s)	260, 489, 490
BsmAI	GTCTC	1 cut(s)	269
BsmI	GAATGC	1 cut(s)	772
BsnI	GGCC	3 cut(s)	217, 321, 366
Bso31I	GGTCTC	1 cut(s)	269
Bsp119I	TTCGAA	1 cut(s)	646
Bsp1286I	GDGCHC	2 cut(s)	427, 547
Bsp143I	GATC	4 cut(s)	300, 687, 759, 834
Bsp19I	CCATGG	1 cut(s)	560
BspANI	GGCC	3 cut(s)	217, 321, 366
BspCNI	CTCAG	1 cut(s)	169
BspLI	GGNNCC	2 cut(s)	218, 681
BspQI	GCTCTTC	1 cut(s)	323
BspT104I	TTCGAA	1 cut(s)	646
BspT107I	GGYRCC	1 cut(s)	679
BspTNI	GGTCTC	1 cut(s)	269
BsrI	ACTGG	5 cut(s)	96, 177, 322, 349, 832
BssECI	CCNNGG	3 cut(s)	560, 699, 798
BssMI	GATC	4 cut(s)	300, 687, 759, 834
BssT1I	CCWWGG	2 cut(s)	560, 699
Bst2UI	CCWGG	3 cut(s)	158, 278, 799
Bst4CI	ACNGT	6 cut(s)	208, 412, 479, 542, 655, 757
Bst6I	CTCTTC	1 cut(s)	323
BstBI	TTCGAA	1 cut(s)	646
BstC8I	GCNNGC	4 cut(s)	30, 118, 247, 323
BstDEI	CTNAG	3 cut(s)	102, 177, 779
BstDSI	CCRYGG	1 cut(s)	560
BstF5I	GGATG	2 cut(s)	166, 820
BstHHI	GCGC	1 cut(s)	623
BstKTI	GATC	4 cut(s)	303, 690, 762, 837
BstMAI	GTCTC	1 cut(s)	269
BstMBI	GATC	4 cut(s)	300, 687, 759, 834
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 182, 242, 278, 794
BstNI	CCWGG	3 cut(s)	158, 278, 799
BstNSI	RCATGY	2 cut(s)	32, 80
BstSCI	CCNGG	3 cut(s)	156, 276, 797
BstSFI	CTRYAG	2 cut(s)	186, 475
BstSLI	GKGCMC	1 cut(s)	547
BstV1I	GCAGC	3 cut(s)	107, 245, 506
BstV2I	GAAGAC	1 cut(s)	758
BsuRI	GGCC	3 cut(s)	217, 321, 366
BtgI	CCRYGG	1 cut(s)	560
BtsCI	GGATG	2 cut(s)	166, 820
BtsIMutI	CAGTG	3 cut(s)	417, 538, 762
Cac8I	GCNNGC	4 cut(s)	30, 118, 247, 323
CaiI	CAGNNNCTG	1 cut(s)	236
CfoI	GCGC	1 cut(s)	623
Cfr13I	GGNCC	1 cut(s)	216
CseI	GACGC	1 cut(s)	112
Csp6I	GTAC	1 cut(s)	480
CviAII	CATG	5 cut(s)	29, 77, 404, 561, 821
CviQI	GTAC	1 cut(s)	480
DdeI	CTNAG	3 cut(s)	102, 177, 779
DpnI	GATC	4 cut(s)	302, 689, 761, 836
DpnII	GATC	4 cut(s)	300, 687, 759, 834
EaeI	YGGCCR	2 cut(s)	319, 364
Eam1104I	CTCTTC	1 cut(s)	323
EarI	CTCTTC	1 cut(s)	323
Ecl136II	GAGCTC	1 cut(s)	425
Eco130I	CCWWGG	2 cut(s)	560, 699
Eco24I	GRGCYC	1 cut(s)	427
Eco31I	GGTCTC	1 cut(s)	269
Eco53kI	GAGCTC	1 cut(s)	425
Eco57I	CTGAAG	4 cut(s)	258, 347, 770, 810
EcoICRI	GAGCTC	1 cut(s)	425
EcoO109I	RGGNCCY	1 cut(s)	216
EcoRII	CCWGG	3 cut(s)	156, 276, 797
EcoT14I	CCWWGG	2 cut(s)	560, 699
EcoT22I	ATGCAT	1 cut(s)	30
EcoT38I	GRGCYC	1 cut(s)	427
ErhI	CCWWGG	2 cut(s)	560, 699
FaeI	CATG	5 cut(s)	32, 80, 407, 564, 824
FatI	CATG	5 cut(s)	28, 76, 403, 560, 820
FbaI	TGATCA	1 cut(s)	687
Fnu4HI	GCNGC	4 cut(s)	15, 121, 234, 495
FokI	GGATG	2 cut(s)	173, 827
FriOI	GRGCYC	1 cut(s)	427
Fsp4HI	GCNGC	4 cut(s)	15, 121, 234, 495
FspBI	CTAG	3 cut(s)	192, 213, 383
GlaI	GCGC	1 cut(s)	622
GluI	GCNGC	4 cut(s)	15, 121, 234, 495
GsaI	CCCAGC	1 cut(s)	621
GsuI	CTGGAG	1 cut(s)	315
HaeIII	GGCC	3 cut(s)	217, 321, 366
HgaI	GACGC	1 cut(s)	112
HhaI	GCGC	1 cut(s)	623
Hin1II	CATG	5 cut(s)	32, 80, 407, 564, 824
Hin6I	GCGC	1 cut(s)	621
HinP1I	GCGC	1 cut(s)	621
HindIII	AAGCTT	1 cut(s)	20
HinfI	GANTC	4 cut(s)	85, 505, 586, 764
HphI	GGTGA	2 cut(s)	266, 406
Hpy166II	GTNNAC	3 cut(s)	170, 397, 545
Hpy188I	TCNGA	1 cut(s)	585
Hpy188III	TCNNGA	2 cut(s)	445, 470
Hpy8I	GTNNAC	3 cut(s)	170, 397, 545
HpyAV	CCTTC	4 cut(s)	233, 670, 730, 734
HpyCH4III	ACNGT	6 cut(s)	208, 412, 479, 542, 655, 757
HpyCH4V	TGCA	5 cut(s)	17, 28, 245, 374, 545
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 182, 242, 278, 794
HpyF3I	CTNAG	3 cut(s)	102, 177, 779
Hsp92II	CATG	5 cut(s)	32, 80, 407, 564, 824
HspAI	GCGC	1 cut(s)	621
Ksp22I	TGATCA	1 cut(s)	687
Kzo9I	GATC	4 cut(s)	300, 687, 759, 834
LguI	GCTCTTC	1 cut(s)	323
LmnI	GCTCC	1 cut(s)	422
Lsp1109I	GCAGC	3 cut(s)	107, 245, 506
LweI	GCATC	1 cut(s)	784
MaeI	CTAG	3 cut(s)	192, 213, 383
MaeIII	GTNAC	5 cut(s)	406, 412, 428, 550, 655
MalI	GATC	4 cut(s)	302, 689, 761, 836
MboI	GATC	4 cut(s)	300, 687, 759, 834
MboII	GAAGA	5 cut(s)	340, 682, 763, 803, 844
MhlI	GDGCHC	2 cut(s)	427, 547
MlsI	TGGCCA	2 cut(s)	321, 366
MluCI	AATT	6 cut(s)	142, 200, 225, 437, 534, 567
MluNI	TGGCCA	2 cut(s)	321, 366
MlyI	GAGTC	3 cut(s)	514, 580, 758
MmeI	TCCRAC	1 cut(s)	403
MnlI	CCTC	5 cut(s)	50, 106, 137, 158, 838
Mox20I	TGGCCA	2 cut(s)	321, 366
Mph1103I	ATGCAT	1 cut(s)	30
MscI	TGGCCA	2 cut(s)	321, 366
MseI	TTAA	2 cut(s)	500, 850
Msp20I	TGGCCA	2 cut(s)	321, 366
MspA1I	CMGCKG	2 cut(s)	236, 325
MspR9I	CCNGG	3 cut(s)	158, 278, 799
Mva1269I	GAATGC	1 cut(s)	772
MvaI	CCWGG	3 cut(s)	158, 278, 799
MwoI	GCNNNNNNNGC	5 cut(s)	11, 182, 242, 278, 794
NcoI	CCATGG	1 cut(s)	560
NdeII	GATC	4 cut(s)	300, 687, 759, 834
NlaIII	CATG	5 cut(s)	32, 80, 407, 564, 824
NlaIV	GGNNCC	2 cut(s)	218, 681
NmuCI	GTSAC	2 cut(s)	406, 412
NsiI	ATGCAT	1 cut(s)	30
NspI	RCATGY	2 cut(s)	32, 80
NspV	TTCGAA	1 cut(s)	646
PaeI	GCATGC	1 cut(s)	32
PciSI	GCTCTTC	1 cut(s)	323
PctI	GAATGC	1 cut(s)	772
PfeI	GAWTC	1 cut(s)	85
PkrI	GCNGC	4 cut(s)	16, 122, 235, 496
PleI	GAGTC	3 cut(s)	513, 580, 758
PpsI	GAGTC	3 cut(s)	513, 580, 758
Psp124BI	GAGCTC	1 cut(s)	427
Psp6I	CCWGG	3 cut(s)	156, 276, 797
PspFI	CCCAGC	1 cut(s)	617
PspGI	CCWGG	3 cut(s)	156, 276, 797
PspN4I	GGNNCC	2 cut(s)	218, 681
PspPI	GGNCC	1 cut(s)	216
PstNI	CAGNNNCTG	1 cut(s)	236
PvuII	CAGCTG	2 cut(s)	236, 325
RsaI	GTAC	1 cut(s)	481
RsaNI	GTAC	1 cut(s)	480
SacI	GAGCTC	1 cut(s)	427
SapI	GCTCTTC	1 cut(s)	323
SaqAI	TTAA	2 cut(s)	500, 850
SatI	GCNGC	4 cut(s)	15, 121, 234, 495
Sau3AI	GATC	4 cut(s)	300, 687, 759, 834
Sau96I	GGNCC	1 cut(s)	216
SchI	GAGTC	3 cut(s)	514, 580, 758
ScrFI	CCNGG	3 cut(s)	158, 278, 799
SduI	GDGCHC	2 cut(s)	427, 547
SfaNI	GCATC	1 cut(s)	784
SfcI	CTRYAG	2 cut(s)	186, 475
SfuI	TTCGAA	1 cut(s)	646
SphI	GCATGC	1 cut(s)	32
Sse9I	AATT	6 cut(s)	142, 200, 225, 437, 534, 567
SspMI	CTAG	3 cut(s)	192, 213, 383
SstI	GAGCTC	1 cut(s)	427
StyD4I	CCNGG	3 cut(s)	156, 276, 797
StyI	CCWWGG	2 cut(s)	560, 699
TaaI	ACNGT	6 cut(s)	208, 412, 479, 542, 655, 757
TaqI	TCGA	6 cut(s)	303, 435, 471, 517, 646, 762
TasI	AATT	6 cut(s)	142, 200, 225, 437, 534, 567
TfiI	GAWTC	1 cut(s)	85
Tru1I	TTAA	2 cut(s)	500, 850
Tru9I	TTAA	2 cut(s)	500, 850
TscAI	CASTG	3 cut(s)	417, 545, 762
TseFI	GTSAC	2 cut(s)	406, 412
TseI	GCWGC	4 cut(s)	14, 120, 233, 494
Tsp45I	GTSAC	2 cut(s)	406, 412
TspDTI	ATGAA	2 cut(s)	57, 477
TspRI	CASTG	3 cut(s)	417, 545, 762
VneI	GTGCAC	1 cut(s)	543
XapI	RAATTY	3 cut(s)	142, 225, 437
XceI	RCATGY	2 cut(s)	32, 80
XcmI	CCANNNNNNNNNTGG	1 cut(s)	673
XspI	CTAG	3 cut(s)	192, 213, 383
Zsp2I	ATGCAT	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.