Rw6G023250

Zinc-binding dehydrogenase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Forward (+)
45558130 .. 45560043
1914 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G023250.1

Sequence Viewer

Length: 993 bp
ATGGCAGCCATGGCAGCAAAACTTATGCGTGCGGTTCAGTACGACGGTTATGGTGGAGGACCTTCCGGTCTAAAGCATGTTGAGGTTCCGATCCCAACTCCGAAGAAAGATGAGGTTTTGCTGAAATTGGAAGCGGCTACCATAAATCCAATTGATTGGAAAGTTCAGAAAGGCGTATTCCGCCCTTTTACCAAGAAAGTTCCCTTATATACCTGTGATGTGGCTGGAGAGGTTGTCGACGTTGGACAAGGAGTTCAGAAGTTCAAAGTGGGCGACAAAGTTGTAGCATTTTTCACCCAGGCTAATGGAGGTGGATTTGCTGAGTTTGCAACTGCTAGTGAGAGTTTGACTGTTACTAGGCCACCTGAAGTTTCAGCAGCCGAAGGTGCAGGGCTACCTATTGCTGGTCTCACAGCTCACCAGTGTATCACCCAAGCTGCAGGAGTCAAGCTTGATGGCACTGGCCCACAGAAGAACATATTGGTTACTGCTGCCTCAGGCGGTGTAGGTCACTATGCAGTTCAATTGGCAAAGCTTGGGAACACTCACGTGACAGCTACTTGTGGTGCACGCAACGTTGAATTTGTCAAGAGCTTAGGGGCCGATGAGGTTCTTGACTACAAGACCCCAGAAGGGGCAGCTCTGAATAGCCCTTCTGGTCGGAAGTACGATGCTGTTATCCACTGTGCAACTGGCATTCCTTGGTCCACATTTGAGCCGAATTTGAGTCCAAATGGGAAGGTTATAGACATTACTCCCAGTCCAAGTGCATTGCTTACTTTCGCTCTGAAGAAACTCACCTTCTCCAAAAAGCAACTGGTGCCGCTGTTCGTGAATGCCAAGGCAGAGAATCTGGATTATCTTGTGAAGTTGGTGAAGGAAGGAAAGCTCAAGACAGTGATTGACTCAAAGTATCCTCTGAGCAAGGCTGAAGAAGCTTGGGCTAAAAGTATTGATGGCCATGCTACTGGGAAGATCATTGTGGAGCCTTAA

Protein Analysis

330

Amino Acids

34.77

Weight (kDa)

8.93

Isoelectric Point (pI)

22.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 36 - 119 7.3e-14 Alcohol dehydrogenase GroES-like domain
ADH_zinc_N PF00107 168 - 291 7.3e-11 Zinc-binding dehydrogenase
ADH_zinc_N_2 PF13602 199 - 328 3.3e-23 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000313)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G13010
fragaria_vesca FvH4_2g18240 FvH4_2g18280 FvH4_2g18310 FvH4_2g18320 FvH4_2g18330 FvH4_2g18340 FvH4_2g18350
malus_domestica MD05G1166800.v1.1 MD05G1167200.v1.1 MD05G1167300.v1.1 MD05G1167400.v1.1 MD05G1167600.v1.1 MD05G1168000.v1.1 MD05G1168200.v1.1 MD05G1168400.v1.1 MD05G1168600.v1.1 MD05G1168700.v1.1 MD05G1168800.v1.1 MD10G1156900.v1.1 MD10G1157000.v1.1 MD10G1157100.v1.1 MD10G1157200.v1.1
prunus_persica Prupe.8G195100_v2.0.a1 Prupe.8G195100_v2.0.a1 Prupe.8G195300_v2.0.a1 Prupe.8G195600_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G196000_v2.0.a1 Prupe.8G196000_v2.0.a1
pyrus_communis pycom05g15560 pycom05g15600 pycom05g15610 pycom05g15620 pycom05g15630 pycom10g13550 pycom10g13570
rosa_chinensis RchiOBHm_Chr6g0283611 RchiOBHm_Chr6g0283631 RchiOBHm_Chr6g0283641 RchiOBHm_Chr6g0283661 RchiOBHm_Chr6g0283681 RchiOBHm_Chr6g0283691 RchiOBHm_Chr6g0283701 RchiOBHm_Chr6g0283711 RchiOBHm_Chr6g0283721
rosa_laevigata RLG00000012804 RLG00000012807 RLG00000012811
rosa_multiflora Rmu_co8263921.1_g000001 Rmu_sc0001521.1_g000009 Rmu_sc0002906.1_g000002 Rmu_sc0002906.1_g000011 Rmu_sc0002906.1_g000013 Rmu_sc0005719.1_g000016 Rmu_sc0005719.1_g000022 Rmu_sc0029460.1_g000001
rosa_roxburghii Rroxscaffold_7G00185240 Rroxscaffold_7G00185250 Rroxscaffold_7G00185270 Rroxscaffold_7G00185280 Rroxscaffold_7G00185290 Rroxscaffold_7G00185330 Rroxscaffold_7G00185350
rosa_rugosa Rorug06G0156100 Rorug06G0156300 Rorug06G0156400 Rorug06G0156500 Rorug06G0156600 Rorug06G0156700 Rorug06G0156800 Rorug06G0156900 Rorug06G0157000
rosa_samantha Rh6AG267900 Rh6AG268100 Rh6AG268200 Rh6AG268400 Rh6AG268600 Rh6AG268700 Rh6AG268900 Rh6AG269100 Rh6BG270700 Rh6BG270900 Rh6BG271000 Rh6BG271200 Rh6BG271400 Rh6BG271500 Rh6CG270200 Rh6CG270400 Rh6CG270500 Rh6CG270800 Rh6CG270900 Rh6CG271000 Rh6CG271100 Rh6CG271300 Rh6DG263900 Rh6DG264100 Rh6DG264200 Rh6DG264400 Rh6DG264600 Rh6DG264800 Rh6DG265200
rosa_wichuraiana Rw6G023210 Rw6G023220 Rw6G023230 Rw6G023240 Rw6G023250 Rw6G023260 Rw6G023270 Rw6G023280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 66
AccB1I GGYRCC 1 cut(s) 820
AccI GTMKAC 1 cut(s) 237
AciI CCGC 5 cut(s) 32, 134, 181, 501, 824
AclI AACGTT 1 cut(s) 576
AclWI GGATC 1 cut(s) 85
AcoI YGGCCR 1 cut(s) 958
AcsI RAATTY 2 cut(s) 581, 721
AcuI CTGAAG 3 cut(s) 387, 809, 951
AcvI CACGTG 1 cut(s) 550
AfaI GTAC 2 cut(s) 41, 668
AfiI CCNNNNNNNGG 3 cut(s) 404, 633, 634
AgsI TTSAA 3 cut(s) 265, 524, 581
AjnI CCWGG 1 cut(s) 297
AjuI GAANNNNNNNTTGG 2 cut(s) 464, 496
AleI CACNNNNGTG 1 cut(s) 548
AloI GAACNNNNNNTCC 2 cut(s) 237, 269
AluBI AGCT 9 cut(s) 416, 437, 451, 535, 557, 594, 641, 889, 938
AluI AGCT 9 cut(s) 416, 437, 451, 535, 557, 594, 641, 889, 938
Alw21I GWGCWC 1 cut(s) 571
Alw26I GTCTC 1 cut(s) 413
Alw44I GTGCAC 1 cut(s) 567
AlwI GGATC 1 cut(s) 85
AoxI GGCC 4 cut(s) 359, 463, 600, 958
ApaLI GTGCAC 1 cut(s) 567
ApeKI GCWGC 6 cut(s) 5, 14, 377, 437, 491, 638
ApoI RAATTY 2 cut(s) 581, 721
AspS9I GGNCC 4 cut(s) 59, 464, 600, 705
AsuHPI GGTGA 5 cut(s) 286, 410, 421, 790, 886
AvaII GGWCC 2 cut(s) 59, 705
AxyI CCTNAGG 1 cut(s) 496
BaeGI GKGCMC 1 cut(s) 571
BaeI ACNNNNGTAYC 2 cut(s) 409, 442
BalI TGGCCA 1 cut(s) 960
BanI GGYRCC 1 cut(s) 820
BbrPI CACGTG 1 cut(s) 550
Bbv12I GWGCWC 1 cut(s) 571
BbvI GCAGC 6 cut(s) 17, 26, 389, 424, 478, 650
BccI CCATC 2 cut(s) 449, 950
BciT130I CCWGG 1 cut(s) 299
BciVI GTATCC 1 cut(s) 924
BcoDI GTCTC 1 cut(s) 413
BfaI CTAG 2 cut(s) 336, 357
BfmI CTRYAG 1 cut(s) 438
BfuI GTATCC 1 cut(s) 924
BisI GCNGC 8 cut(s) 6, 15, 135, 378, 438, 492, 639, 824
BlsI GCNGC 8 cut(s) 7, 16, 136, 379, 439, 493, 640, 825
Bme1390I CCNGG 1 cut(s) 299
Bme18I GGWCC 2 cut(s) 59, 705
BmgT120I GGNCC 4 cut(s) 59, 464, 600, 705
BmiI GGNNCC 4 cut(s) 87, 601, 822, 987
BmrFI CCNGG 1 cut(s) 299
BmrI ACTGGG 2 cut(s) 753, 978
BmsI GCATC 1 cut(s) 661
BmuI ACTGGG 2 cut(s) 753, 978
BpmI CTGGAG 1 cut(s) 246
Bpu10I CCTNAGC 1 cut(s) 595
BpuEI CTTGAG 1 cut(s) 875
BsaAI YACGTR 1 cut(s) 550
BsaI GGTCTC 1 cut(s) 413
BsaJI CCNNGG 4 cut(s) 9, 297, 701, 840
BsaWI WCCGGW 1 cut(s) 65
BsaXI ACNNNNNCTCC 2 cut(s) 219, 249
Bsc4I CCNNNNNNNGG 3 cut(s) 404, 633, 634
Bse1I ACTGG 6 cut(s) 421, 466, 697, 759, 822, 973
Bse21I CCTNAGG 1 cut(s) 496
Bse3DI GCAATG 1 cut(s) 770
BseBI CCWGG 1 cut(s) 299
BseDI CCNNGG 4 cut(s) 9, 297, 701, 840
BseLI CCNNNNNNNGG 3 cut(s) 404, 633, 634
BseMI GCAATG 1 cut(s) 770
BseMII CTCAG 3 cut(s) 312, 510, 911
BseNI ACTGG 6 cut(s) 421, 466, 697, 759, 822, 973
BseSI GKGCMC 1 cut(s) 571
BseXI GCAGC 6 cut(s) 17, 26, 389, 424, 478, 650
BsgI GTGCAG 1 cut(s) 408
BshFI GGCC 4 cut(s) 361, 465, 602, 960
BshNI GGYRCC 1 cut(s) 820
BsiHKAI GWGCWC 1 cut(s) 571
BsiSI CCGG 1 cut(s) 66
BslI CCNNNNNNNGG 3 cut(s) 404, 633, 634
BsmAI GTCTC 1 cut(s) 413
BsmI GAATGC 2 cut(s) 696, 841
BsnI GGCC 4 cut(s) 361, 465, 602, 960
Bso31I GGTCTC 1 cut(s) 413
Bsp1286I GDGCHC 1 cut(s) 571
Bsp143I GATC 2 cut(s) 90, 975
Bsp19I CCATGG 1 cut(s) 9
BspACI CCGC 5 cut(s) 32, 134, 181, 501, 824
BspANI GGCC 4 cut(s) 361, 465, 602, 960
BspCNI CTCAG 3 cut(s) 313, 509, 912
BspLI GGNNCC 4 cut(s) 87, 601, 822, 987
BspMAI CTGCAG 1 cut(s) 442
BspPI GGATC 1 cut(s) 85
BspT107I GGYRCC 1 cut(s) 820
BspTNI GGTCTC 1 cut(s) 413
BsrDI GCAATG 1 cut(s) 770
BsrI ACTGG 6 cut(s) 421, 466, 697, 759, 822, 973
BssECI CCNNGG 4 cut(s) 9, 297, 701, 840
BssMI GATC 2 cut(s) 90, 975
BssT1I CCWWGG 3 cut(s) 9, 701, 840
Bst2UI CCWGG 1 cut(s) 299
Bst4CI ACNGT 4 cut(s) 47, 352, 686, 898
BstAPI GCANNNNNTGC 1 cut(s) 820
BstBAI YACGTR 1 cut(s) 550
BstC8I GCNNGC 2 cut(s) 30, 571
BstDEI CTNAG 4 cut(s) 321, 496, 595, 920
BstDSI CCRYGG 1 cut(s) 9
BstKTI GATC 2 cut(s) 93, 978
BstMAI GTCTC 1 cut(s) 413
BstMBI GATC 2 cut(s) 90, 975
BstMWI GCNNNNNNNGC 7 cut(s) 11, 14, 180, 326, 386, 820, 935
BstNI CCWGG 1 cut(s) 299
BstNSI RCATGY 1 cut(s) 80
BstSCI CCNGG 1 cut(s) 297
BstSFI CTRYAG 1 cut(s) 438
BstSLI GKGCMC 1 cut(s) 571
BstV1I GCAGC 6 cut(s) 17, 26, 389, 424, 478, 650
BstXI CCANNNNNNTGG 3 cut(s) 156, 305, 968
Bsu36I CCTNAGG 1 cut(s) 496
BsuI GTATCC 1 cut(s) 924
BsuRI GGCC 4 cut(s) 361, 465, 602, 960
BtgI CCRYGG 1 cut(s) 9
BtsIMutI CAGTG 4 cut(s) 428, 459, 682, 903
Cac8I GCNNGC 2 cut(s) 30, 571
Cfr13I GGNCC 4 cut(s) 59, 464, 600, 705
Csp6I GTAC 2 cut(s) 40, 667
CviAII CATG 3 cut(s) 10, 77, 962
CviQI GTAC 2 cut(s) 40, 667
DdeI CTNAG 4 cut(s) 321, 496, 595, 920
DpnI GATC 2 cut(s) 92, 977
DpnII GATC 2 cut(s) 90, 975
DrdI GACNNNNNNGTC 1 cut(s) 66
DseDI GACNNNNNNGTC 1 cut(s) 66
EaeI YGGCCR 1 cut(s) 958
EciI GGCGGA 1 cut(s) 170
Eco130I CCWWGG 3 cut(s) 9, 701, 840
Eco31I GGTCTC 1 cut(s) 413
Eco47I GGWCC 2 cut(s) 59, 705
Eco57I CTGAAG 3 cut(s) 387, 809, 951
Eco72I CACGTG 1 cut(s) 550
Eco81I CCTNAGG 1 cut(s) 496
EcoO109I RGGNCCY 1 cut(s) 59
EcoRII CCWGG 1 cut(s) 297
EcoT14I CCWWGG 3 cut(s) 9, 701, 840
ErhI CCWWGG 3 cut(s) 9, 701, 840
FaeI CATG 3 cut(s) 13, 80, 965
FatI CATG 3 cut(s) 9, 76, 961
FblI GTMKAC 1 cut(s) 237
Fnu4HI GCNGC 8 cut(s) 6, 15, 135, 378, 438, 492, 639, 824
Fsp4HI GCNGC 8 cut(s) 6, 15, 135, 378, 438, 492, 639, 824
FspBI CTAG 2 cut(s) 336, 357
GluI GCNGC 8 cut(s) 6, 15, 135, 378, 438, 492, 639, 824
GsuI CTGGAG 1 cut(s) 246
HaeIII GGCC 4 cut(s) 361, 465, 602, 960
HapII CCGG 1 cut(s) 66
Hin1II CATG 3 cut(s) 13, 80, 965
HincII GTYRAC 1 cut(s) 238
HindII GTYRAC 1 cut(s) 238
HindIII AAGCTT 3 cut(s) 449, 533, 936
HinfI GANTC 4 cut(s) 444, 727, 850, 905
HpaII CCGG 1 cut(s) 66
HphI GGTGA 5 cut(s) 286, 410, 421, 790, 886
Hpy166II GTNNAC 3 cut(s) 238, 569, 708
Hpy188I TCNGA 8 cut(s) 90, 102, 168, 258, 645, 663, 789, 921
Hpy188III TCNNGA 5 cut(s) 589, 614, 832, 854, 892
Hpy8I GTNNAC 3 cut(s) 238, 569, 708
Hpy99I CGWCG 2 cut(s) 47, 242
HpyAV CCTTC 8 cut(s) 72, 377, 626, 663, 733, 811, 871, 875
HpyCH4III ACNGT 4 cut(s) 47, 352, 686, 898
HpyCH4IV ACGT 3 cut(s) 240, 549, 576
HpyCH4V TGCA 7 cut(s) 329, 389, 440, 518, 569, 689, 770
HpyF10VI GCNNNNNNNGC 7 cut(s) 11, 14, 180, 326, 386, 820, 935
HpyF3I CTNAG 4 cut(s) 321, 496, 595, 920
HpySE526I ACGT 3 cut(s) 240, 549, 576
Hsp92II CATG 3 cut(s) 13, 80, 965
Kzo9I GATC 2 cut(s) 90, 975
LmnI GCTCC 1 cut(s) 985
Lsp1109I GCAGC 6 cut(s) 17, 26, 389, 424, 478, 650
LweI GCATC 1 cut(s) 661
MaeI CTAG 2 cut(s) 336, 357
MaeII ACGT 3 cut(s) 240, 549, 576
MaeIII GTNAC 4 cut(s) 352, 484, 509, 550
MalI GATC 2 cut(s) 92, 977
MboI GATC 2 cut(s) 90, 975
MboII GAAGA 5 cut(s) 115, 484, 802, 944, 985
MfeI CAATTG 2 cut(s) 150, 524
MhlI GDGCHC 1 cut(s) 571
MlsI TGGCCA 1 cut(s) 960
MluCI AATT 5 cut(s) 125, 150, 524, 581, 721
MluNI TGGCCA 1 cut(s) 960
MlyI GAGTC 3 cut(s) 453, 736, 899
MmeI TCCRAC 2 cut(s) 223, 641
MnlI CCTC 8 cut(s) 50, 76, 106, 223, 302, 505, 601, 927
Mox20I TGGCCA 1 cut(s) 960
MscI TGGCCA 1 cut(s) 960
MseI TTAA 1 cut(s) 991
MslI CAYNNNNRTG 1 cut(s) 548
Msp20I TGGCCA 1 cut(s) 960
MspA1I CMGCKG 1 cut(s) 826
MspI CCGG 1 cut(s) 66
MspR9I CCNGG 1 cut(s) 299
MunI CAATTG 2 cut(s) 150, 524
Mva1269I GAATGC 2 cut(s) 696, 841
MvaI CCWGG 1 cut(s) 299
MwoI GCNNNNNNNGC 7 cut(s) 11, 14, 180, 326, 386, 820, 935
NcoI CCATGG 1 cut(s) 9
NdeII GATC 2 cut(s) 90, 975
NlaIII CATG 3 cut(s) 13, 80, 965
NlaIV GGNNCC 4 cut(s) 87, 601, 822, 987
NmuCI GTSAC 2 cut(s) 509, 550
NspI RCATGY 1 cut(s) 80
OliI CACNNNNGTG 1 cut(s) 548
PctI GAATGC 2 cut(s) 696, 841
PfeI GAWTC 1 cut(s) 850
PkrI GCNGC 8 cut(s) 7, 16, 136, 379, 439, 493, 640, 825
PleI GAGTC 3 cut(s) 452, 735, 899
PmaCI CACGTG 1 cut(s) 550
PmlI CACGTG 1 cut(s) 550
PpsI GAGTC 3 cut(s) 452, 735, 899
Ppu21I YACGTR 1 cut(s) 550
PpuMI RGGWCCY 1 cut(s) 59
Psp1406I AACGTT 1 cut(s) 576
Psp5II RGGWCCY 1 cut(s) 59
Psp6I CCWGG 1 cut(s) 297
PspCI CACGTG 1 cut(s) 550
PspGI CCWGG 1 cut(s) 297
PspN4I GGNNCC 4 cut(s) 87, 601, 822, 987
PspPI GGNCC 4 cut(s) 59, 464, 600, 705
PspPPI RGGWCCY 1 cut(s) 59
PstI CTGCAG 1 cut(s) 442
RsaI GTAC 2 cut(s) 41, 668
RsaNI GTAC 2 cut(s) 40, 667
RseI CAYNNNNRTG 1 cut(s) 548
SalI GTCGAC 1 cut(s) 236
SaqAI TTAA 1 cut(s) 991
SatI GCNGC 8 cut(s) 6, 15, 135, 378, 438, 492, 639, 824
Sau3AI GATC 2 cut(s) 90, 975
Sau96I GGNCC 4 cut(s) 59, 464, 600, 705
SchI GAGTC 3 cut(s) 453, 736, 899
ScrFI CCNGG 1 cut(s) 299
SduI GDGCHC 1 cut(s) 571
SfaNI GCATC 1 cut(s) 661
SfcI CTRYAG 1 cut(s) 438
SinI GGWCC 2 cut(s) 59, 705
SmiMI CAYNNNNRTG 1 cut(s) 548
SmlI CTYRAG 1 cut(s) 890
SmoI CTYRAG 1 cut(s) 890
Sse9I AATT 5 cut(s) 125, 150, 524, 581, 721
SsiI CCGC 5 cut(s) 32, 134, 181, 501, 824
SspMI CTAG 2 cut(s) 336, 357
StyD4I CCNGG 1 cut(s) 297
StyI CCWWGG 3 cut(s) 9, 701, 840
TaaI ACNGT 4 cut(s) 47, 352, 686, 898
TaiI ACGT 3 cut(s) 243, 552, 579
TaqI TCGA 1 cut(s) 237
TasI AATT 5 cut(s) 125, 150, 524, 581, 721
TauI GCSGC 2 cut(s) 137, 826
TfiI GAWTC 1 cut(s) 850
Tru1I TTAA 1 cut(s) 991
Tru9I TTAA 1 cut(s) 991
TscAI CASTG 4 cut(s) 428, 466, 689, 903
TseFI GTSAC 2 cut(s) 509, 550
TseI GCWGC 6 cut(s) 5, 14, 377, 437, 491, 638
Tsp45I GTSAC 2 cut(s) 509, 550
TspRI CASTG 4 cut(s) 428, 466, 689, 903
VneI GTGCAC 1 cut(s) 567
VpaK11BI GGWCC 2 cut(s) 59, 705
XapI RAATTY 2 cut(s) 581, 721
XceI RCATGY 1 cut(s) 80
XcmI CCANNNNNNNNNTGG 2 cut(s) 689, 814
XmiI GTMKAC 1 cut(s) 237
XspI CTAG 2 cut(s) 336, 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.