MD05G1168400.v1.1

Quinone-oxidoreductase homolog, chloroplastic

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
Physical Location & Seq
Reverse (-)
29855406 .. 29857998
2593 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1168400.v1.1.491

Sequence Viewer

Length: 1005 bp
ATGGCAGGCATGGCGCCCAAGCTTATGCATGCGGTGCAGTACGTCCGCTATGGTGGAGGAGCTTCTGGTTTACAGCATGCAGAGGTTCCAATACCCACTCCGAAGAAAGGCGAGGTTTTGCTGAAATTGGAAGCAGCTAGTATAAACCCACTGGATTGGAAAATTCAGAAAGGCGTGGCACGACCTTTTTTGCCCAAAAAATTTCCTCATATACCTGTTACTGATGTTGCTGGAGAGGTTGTAAAAGTTGGAGAGGGCGTCCAAAAGTTCAAACCGGGCGACAAAGTTGTGGCATATCTGACCGCTGCTATTGGAGGCGGACTGGCTGAGTACGCCACAGCTAATGAGAACATGACAGCGGCCAGGCCACCAGAAGTTTCAGCAGCTGAAGCTGCAGGCTTACCTATTGCTGGCGTCACAGCTCACCAATGTCTCACGCAAGCTGCTCGGGTCAAGCTTGACGGAAGTGGCCAGCAAAAGAACATATTGATTACTGCTGCCTCTGGCGGTGTGGGTCAGTATGCAGTCCAATTAGCCAAGCTCGGTAATGCTCATGTTACGGCCACTTGTGGAGCTCGTAACGTTGAATTTGTCAAGAGCTTAGGGGCAGATGAGGTTCTTGACTACAAGACCCCAGAAGGAGCAGCTCTGAAGAGCCCATCTGGTCGGAAATATGATGCCGTGGTCCACTGCACAACCAGTACCGGTGTTCCCTGGTCAACTTTTGAGCCTAATTTGAGTTCCAACGGGAAGGTCATAGCAATCACTCCCGGTCCAAGTGCCTTTCTTACTTTTGCTCTGAAGAAACTCTCCTTCTCGAAGAAGCGGCTGGTGCCGCTGTTTGCTGATGTCAAGGCTGAGAACCTTGAGTATCTTGTTAAGTTGGTGAAGGAAGGAAAGCTCAAGACGGTAATCGACTCGACGCATCCTCTGAGCAAGGCTGAAGATGCATGGGCTAAGAGTATGGATGGACATGCAACCGGGAAGGTCATCGTTGAGGCTTAA

Protein Analysis

335

Amino Acids

35.0

Weight (kDa)

9.32

Isoelectric Point (pI)

22.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 36 - 121 1.2e-16 Alcohol dehydrogenase GroES-like domain
ADH_zinc_N PF00107 170 - 234 1.5e-10 Zinc-binding dehydrogenase
ADH_zinc_N_2 PF13602 201 - 332 7.7e-23 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000313)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G13010
fragaria_vesca FvH4_2g18240 FvH4_2g18280 FvH4_2g18310 FvH4_2g18320 FvH4_2g18330 FvH4_2g18340 FvH4_2g18350
malus_domestica MD05G1166800.v1.1 MD05G1167200.v1.1 MD05G1167300.v1.1 MD05G1167400.v1.1 MD05G1167600.v1.1 MD05G1168000.v1.1 MD05G1168200.v1.1 MD05G1168400.v1.1 MD05G1168600.v1.1 MD05G1168700.v1.1 MD05G1168800.v1.1 MD10G1156900.v1.1 MD10G1157000.v1.1 MD10G1157100.v1.1 MD10G1157200.v1.1
prunus_persica Prupe.8G195100_v2.0.a1 Prupe.8G195100_v2.0.a1 Prupe.8G195300_v2.0.a1 Prupe.8G195600_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G196000_v2.0.a1 Prupe.8G196000_v2.0.a1
pyrus_communis pycom05g15560 pycom05g15600 pycom05g15610 pycom05g15620 pycom05g15630 pycom10g13550 pycom10g13570
rosa_chinensis RchiOBHm_Chr6g0283611 RchiOBHm_Chr6g0283631 RchiOBHm_Chr6g0283641 RchiOBHm_Chr6g0283661 RchiOBHm_Chr6g0283681 RchiOBHm_Chr6g0283691 RchiOBHm_Chr6g0283701 RchiOBHm_Chr6g0283711 RchiOBHm_Chr6g0283721
rosa_laevigata RLG00000012804 RLG00000012807 RLG00000012811
rosa_multiflora Rmu_co8263921.1_g000001 Rmu_sc0001521.1_g000009 Rmu_sc0002906.1_g000002 Rmu_sc0002906.1_g000011 Rmu_sc0002906.1_g000013 Rmu_sc0005719.1_g000016 Rmu_sc0005719.1_g000022 Rmu_sc0029460.1_g000001
rosa_roxburghii Rroxscaffold_7G00185240 Rroxscaffold_7G00185250 Rroxscaffold_7G00185270 Rroxscaffold_7G00185280 Rroxscaffold_7G00185290 Rroxscaffold_7G00185330 Rroxscaffold_7G00185350
rosa_rugosa Rorug06G0156100 Rorug06G0156300 Rorug06G0156400 Rorug06G0156500 Rorug06G0156600 Rorug06G0156700 Rorug06G0156800 Rorug06G0156900 Rorug06G0157000
rosa_samantha Rh6AG267900 Rh6AG268100 Rh6AG268200 Rh6AG268400 Rh6AG268600 Rh6AG268700 Rh6AG268900 Rh6AG269100 Rh6BG270700 Rh6BG270900 Rh6BG271000 Rh6BG271200 Rh6BG271400 Rh6BG271500 Rh6CG270200 Rh6CG270400 Rh6CG270500 Rh6CG270800 Rh6CG270900 Rh6CG271000 Rh6CG271100 Rh6CG271300 Rh6DG263900 Rh6DG264100 Rh6DG264200 Rh6DG264400 Rh6DG264600 Rh6DG264800 Rh6DG265200
rosa_wichuraiana Rw6G023210 Rw6G023220 Rw6G023230 Rw6G023240 Rw6G023250 Rw6G023260 Rw6G023270 Rw6G023280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 13, 832
AciI CCGC 8 cut(s) 32, 46, 303, 318, 359, 507, 826, 836
AclI AACGTT 1 cut(s) 582
AcoI YGGCCR 3 cut(s) 360, 469, 561
AcsI RAATTY 3 cut(s) 162, 200, 587
AcuI CTGAAG 4 cut(s) 408, 671, 821, 963
AcyI GRCGYC 3 cut(s) 14, 258, 414
AfaI GTAC 3 cut(s) 41, 332, 703
AfiI CCNNNNNNNGG 2 cut(s) 107, 410
AgeI ACCGGT 1 cut(s) 704
AgsI TTSAA 2 cut(s) 271, 587
AjnI CCWGG 2 cut(s) 362, 713
Alw21I GWGCWC 1 cut(s) 577
Alw26I GTCTC 1 cut(s) 437
AlwNI CAGNNNCTG 1 cut(s) 386
Ama87I CYCGRG 1 cut(s) 447
AoxI GGCC 4 cut(s) 360, 365, 469, 561
ApeKI GCWGC 7 cut(s) 134, 305, 383, 392, 443, 497, 644
ApoI RAATTY 3 cut(s) 162, 200, 587
AsiGI ACCGGT 1 cut(s) 704
AspLEI GCGC 1 cut(s) 16
AspS9I GGNCC 2 cut(s) 685, 773
AsuC2I CCSGG 3 cut(s) 276, 771, 982
AsuHPI GGTGA 2 cut(s) 416, 898
AvaI CYCGRG 1 cut(s) 447
AvaII GGWCC 2 cut(s) 685, 773
BalI TGGCCA 1 cut(s) 471
BanI GGYRCC 2 cut(s) 13, 832
BanII GRGCYC 2 cut(s) 577, 659
Bbv12I GWGCWC 1 cut(s) 577
BbvI GCAGC 7 cut(s) 146, 292, 379, 395, 430, 484, 656
BccI CCATC 2 cut(s) 667, 962
BceAI ACGGC 2 cut(s) 576, 665
BcgI CGANNNNNNTGC 2 cut(s) 428, 462
BciT130I CCWGG 2 cut(s) 364, 715
BcnI CCSGG 3 cut(s) 276, 771, 982
BcoDI GTCTC 1 cut(s) 437
BfaI CTAG 1 cut(s) 138
BfmI CTRYAG 1 cut(s) 393
BfoI RGCGCY 1 cut(s) 17
Bme1390I CCNGG 5 cut(s) 276, 364, 715, 771, 982
Bme18I GGWCC 2 cut(s) 685, 773
BmeT110I CYCGRG 1 cut(s) 447
BmgT120I GGNCC 2 cut(s) 685, 773
BmiI GGNNCC 3 cut(s) 15, 87, 834
BmrFI CCNGG 5 cut(s) 276, 364, 715, 771, 982
BmsI GCATC 3 cut(s) 667, 934, 937
BpmI CTGGAG 1 cut(s) 252
Bpu10I CCTNAGC 1 cut(s) 601
BpuEI CTTGAG 2 cut(s) 887, 887
BpuMI CCSGG 3 cut(s) 276, 771, 982
BsaHI GRCGYC 3 cut(s) 14, 258, 414
BsaJI CCNNGG 2 cut(s) 681, 713
BsaWI WCCGGW 1 cut(s) 704
BsaXI ACNNNNNCTCC 4 cut(s) 225, 243, 255, 273
Bsc4I CCNNNNNNNGG 2 cut(s) 107, 410
Bse118I RCCGGY 1 cut(s) 704
Bse1I ACTGG 3 cut(s) 156, 327, 699
BseBI CCWGG 2 cut(s) 364, 715
BseDI CCNNGG 2 cut(s) 681, 713
BseGI GGATG 2 cut(s) 925, 973
BseLI CCNNNNNNNGG 2 cut(s) 107, 410
BseMII CTCAG 3 cut(s) 318, 849, 923
BseNI ACTGG 3 cut(s) 156, 327, 699
BseRI GAGGAG 1 cut(s) 72
BseXI GCAGC 7 cut(s) 146, 292, 379, 395, 430, 484, 656
BsgI GTGCAG 2 cut(s) 56, 676
BshFI GGCC 4 cut(s) 362, 367, 471, 563
BshNI GGYRCC 2 cut(s) 13, 832
BshTI ACCGGT 1 cut(s) 704
BsiHKAI GWGCWC 1 cut(s) 577
BsiHKCI CYCGRG 1 cut(s) 447
BsiSI CCGG 4 cut(s) 275, 705, 771, 981
BslI CCNNNNNNNGG 2 cut(s) 107, 410
BsmAI GTCTC 1 cut(s) 437
BsnI GGCC 4 cut(s) 362, 367, 471, 563
BsoBI CYCGRG 1 cut(s) 447
Bsp1286I GDGCHC 2 cut(s) 577, 659
BspACI CCGC 8 cut(s) 32, 46, 303, 318, 359, 507, 826, 836
BspANI GGCC 4 cut(s) 362, 367, 471, 563
BspCNI CTCAG 3 cut(s) 319, 850, 924
BspLI GGNNCC 3 cut(s) 15, 87, 834
BspMAI CTGCAG 1 cut(s) 397
BspQI GCTCTTC 1 cut(s) 647
BspT107I GGYRCC 2 cut(s) 13, 832
BsrFI RCCGGY 1 cut(s) 704
BsrI ACTGG 3 cut(s) 156, 327, 699
BssAI RCCGGY 1 cut(s) 704
BssECI CCNNGG 2 cut(s) 681, 713
BssNI GRCGYC 3 cut(s) 14, 258, 414
Bst2UI CCWGG 2 cut(s) 364, 715
Bst4CI ACNGT 1 cut(s) 910
Bst6I CTCTTC 1 cut(s) 647
BstACI GRCGYC 3 cut(s) 14, 258, 414
BstAPI GCANNNNNTGC 1 cut(s) 34
BstC8I GCNNGC 7 cut(s) 7, 30, 78, 397, 412, 441, 473
BstDEI CTNAG 5 cut(s) 327, 601, 858, 932, 957
BstDSI CCRYGG 1 cut(s) 681
BstF5I GGATG 2 cut(s) 925, 973
BstH2I RGCGCY 1 cut(s) 17
BstHHI GCGC 1 cut(s) 16
BstMAI GTCTC 1 cut(s) 437
BstMWI GCNNNNNNNGC 8 cut(s) 11, 34, 332, 389, 392, 832, 835, 947
BstNI CCWGG 2 cut(s) 364, 715
BstNSI RCATGY 3 cut(s) 32, 80, 977
BstSCI CCNGG 5 cut(s) 274, 362, 713, 769, 980
BstSFI CTRYAG 1 cut(s) 393
BstV1I GCAGC 7 cut(s) 146, 292, 379, 395, 430, 484, 656
BstXI CCANNNNNNTGG 1 cut(s) 156
BsuRI GGCC 4 cut(s) 362, 367, 471, 563
BtgI CCRYGG 1 cut(s) 681
BtsCI GGATG 2 cut(s) 925, 973
BtsI GCAGTG 1 cut(s) 688
BtsIMutI CAGTG 2 cut(s) 149, 688
Cac8I GCNNGC 7 cut(s) 7, 30, 78, 397, 412, 441, 473
CaiI CAGNNNCTG 1 cut(s) 386
CfoI GCGC 1 cut(s) 16
Cfr10I RCCGGY 1 cut(s) 704
Cfr13I GGNCC 2 cut(s) 685, 773
CseI GACGC 3 cut(s) 247, 403, 931
Csp6I GTAC 3 cut(s) 40, 331, 702
CspAI ACCGGT 1 cut(s) 704
CviAII CATG 7 cut(s) 10, 29, 77, 352, 554, 951, 974
CviQI GTAC 3 cut(s) 40, 331, 702
DdeI CTNAG 5 cut(s) 327, 601, 858, 932, 957
DinI GGCGCC 1 cut(s) 15
EaeI YGGCCR 3 cut(s) 360, 469, 561
Eam1104I CTCTTC 1 cut(s) 647
EarI CTCTTC 1 cut(s) 647
EciI GGCGGA 1 cut(s) 333
Ecl136II GAGCTC 1 cut(s) 575
Eco24I GRGCYC 2 cut(s) 577, 659
Eco47I GGWCC 2 cut(s) 685, 773
Eco53kI GAGCTC 1 cut(s) 575
Eco57I CTGAAG 4 cut(s) 408, 671, 821, 963
Eco88I CYCGRG 1 cut(s) 447
EcoICRI GAGCTC 1 cut(s) 575
EcoRII CCWGG 2 cut(s) 362, 713
EcoT22I ATGCAT 2 cut(s) 30, 952
EcoT38I GRGCYC 2 cut(s) 577, 659
EgeI GGCGCC 1 cut(s) 15
EheI GGCGCC 1 cut(s) 15
FaeI CATG 7 cut(s) 13, 32, 80, 355, 557, 954, 977
FatI CATG 7 cut(s) 9, 28, 76, 351, 553, 950, 973
FokI GGATG 2 cut(s) 912, 980
FriOI GRGCYC 2 cut(s) 577, 659
FspBI CTAG 1 cut(s) 138
GlaI GCGC 1 cut(s) 15
GsuI CTGGAG 1 cut(s) 252
HaeII RGCGCY 1 cut(s) 17
HaeIII GGCC 4 cut(s) 362, 367, 471, 563
HapII CCGG 4 cut(s) 275, 705, 771, 981
HgaI GACGC 3 cut(s) 247, 403, 931
HhaI GCGC 1 cut(s) 16
Hin1I GRCGYC 3 cut(s) 14, 258, 414
Hin1II CATG 7 cut(s) 13, 32, 80, 355, 557, 954, 977
Hin6I GCGC 1 cut(s) 14
HinP1I GCGC 1 cut(s) 14
HincII GTYRAC 1 cut(s) 720
HindII GTYRAC 1 cut(s) 720
HindIII AAGCTT 2 cut(s) 20, 455
HinfI GANTC 1 cut(s) 917
HpaII CCGG 4 cut(s) 275, 705, 771, 981
HphI GGTGA 2 cut(s) 416, 898
Hpy166II GTNNAC 3 cut(s) 71, 688, 720
Hpy188I TCNGA 7 cut(s) 102, 168, 300, 651, 669, 801, 933
Hpy188III TCNNGA 4 cut(s) 595, 620, 817, 904
Hpy8I GTNNAC 3 cut(s) 71, 688, 720
Hpy99I CGWCG 1 cut(s) 925
HpyAV CCTTC 6 cut(s) 632, 745, 823, 883, 887, 979
HpyCH4III ACNGT 1 cut(s) 910
HpyCH4IV ACGT 2 cut(s) 42, 582
HpyCH4V TGCA 8 cut(s) 28, 37, 80, 395, 524, 693, 950, 977
HpyF10VI GCNNNNNNNGC 8 cut(s) 11, 34, 332, 389, 392, 832, 835, 947
HpyF3I CTNAG 5 cut(s) 327, 601, 858, 932, 957
HpySE526I ACGT 2 cut(s) 42, 582
Hsp92I GRCGYC 3 cut(s) 14, 258, 414
Hsp92II CATG 7 cut(s) 13, 32, 80, 355, 557, 954, 977
HspAI GCGC 1 cut(s) 14
KasI GGCGCC 1 cut(s) 13
LguI GCTCTTC 1 cut(s) 647
LmnI GCTCC 3 cut(s) 59, 572, 641
Lsp1109I GCAGC 7 cut(s) 146, 292, 379, 395, 430, 484, 656
LweI GCATC 3 cut(s) 667, 934, 937
MaeI CTAG 1 cut(s) 138
MaeII ACGT 2 cut(s) 42, 582
MaeIII GTNAC 4 cut(s) 217, 415, 556, 578
MboII GAAGA 5 cut(s) 115, 664, 814, 832, 956
MhlI GDGCHC 2 cut(s) 577, 659
MlsI TGGCCA 1 cut(s) 471
MluCI AATT 6 cut(s) 125, 162, 200, 530, 587, 733
MluNI TGGCCA 1 cut(s) 471
Mly113I GGCGCC 1 cut(s) 14
MlyI GAGTC 1 cut(s) 911
MmeI TCCRAC 3 cut(s) 229, 647, 768
Mox20I TGGCCA 1 cut(s) 471
Mph1103I ATGCAT 2 cut(s) 30, 952
MscI TGGCCA 1 cut(s) 471
MseI TTAA 2 cut(s) 879, 1003
Msp20I TGGCCA 1 cut(s) 471
MspA1I CMGCKG 4 cut(s) 305, 359, 386, 838
MspI CCGG 4 cut(s) 275, 705, 771, 981
MspR9I CCNGG 5 cut(s) 276, 364, 715, 771, 982
MvaI CCWGG 2 cut(s) 364, 715
MwoI GCNNNNNNNGC 8 cut(s) 11, 34, 332, 389, 392, 832, 835, 947
NarI GGCGCC 1 cut(s) 14
NciI CCSGG 3 cut(s) 276, 771, 982
NlaIII CATG 7 cut(s) 13, 32, 80, 355, 557, 954, 977
NlaIV GGNNCC 3 cut(s) 15, 87, 834
NmuCI GTSAC 1 cut(s) 415
NsiI ATGCAT 2 cut(s) 30, 952
NspI RCATGY 3 cut(s) 32, 80, 977
PaeI GCATGC 2 cut(s) 32, 80
PciSI GCTCTTC 1 cut(s) 647
PinAI ACCGGT 1 cut(s) 704
PleI GAGTC 1 cut(s) 911
PluTI GGCGCC 1 cut(s) 17
PpsI GAGTC 1 cut(s) 911
Psp124BI GAGCTC 1 cut(s) 577
Psp1406I AACGTT 1 cut(s) 582
Psp6I CCWGG 2 cut(s) 362, 713
PspGI CCWGG 2 cut(s) 362, 713
PspN4I GGNNCC 3 cut(s) 15, 87, 834
PspPI GGNCC 2 cut(s) 685, 773
PstI CTGCAG 1 cut(s) 397
PstNI CAGNNNCTG 1 cut(s) 386
PvuII CAGCTG 1 cut(s) 386
RsaI GTAC 3 cut(s) 41, 332, 703
RsaNI GTAC 3 cut(s) 40, 331, 702
SacI GAGCTC 1 cut(s) 577
SapI GCTCTTC 1 cut(s) 647
SaqAI TTAA 2 cut(s) 879, 1003
Sau96I GGNCC 2 cut(s) 685, 773
SchI GAGTC 1 cut(s) 911
ScrFI CCNGG 5 cut(s) 276, 364, 715, 771, 982
SduI GDGCHC 2 cut(s) 577, 659
SfaNI GCATC 3 cut(s) 667, 934, 937
SfcI CTRYAG 1 cut(s) 393
SfoI GGCGCC 1 cut(s) 15
SinI GGWCC 2 cut(s) 685, 773
SmlI CTYRAG 2 cut(s) 866, 902
SmoI CTYRAG 2 cut(s) 866, 902
SphI GCATGC 2 cut(s) 32, 80
Sse9I AATT 6 cut(s) 125, 162, 200, 530, 587, 733
SsiI CCGC 8 cut(s) 32, 46, 303, 318, 359, 507, 826, 836
SspDI GGCGCC 1 cut(s) 13
SspMI CTAG 1 cut(s) 138
SstI GAGCTC 1 cut(s) 577
StyD4I CCNGG 5 cut(s) 274, 362, 713, 769, 980
TaaI ACNGT 1 cut(s) 910
TaiI ACGT 2 cut(s) 45, 585
TaqI TCGA 3 cut(s) 818, 915, 920
TasI AATT 6 cut(s) 125, 162, 200, 530, 587, 733
TauI GCSGC 3 cut(s) 362, 829, 838
Tru1I TTAA 2 cut(s) 879, 1003
Tru9I TTAA 2 cut(s) 879, 1003
TscAI CASTG 2 cut(s) 156, 695
TseFI GTSAC 1 cut(s) 415
TseI GCWGC 7 cut(s) 134, 305, 383, 392, 443, 497, 644
Tsp45I GTSAC 1 cut(s) 415
TspGWI ACGGA 1 cut(s) 477
TspRI CASTG 2 cut(s) 156, 695
VpaK11BI GGWCC 2 cut(s) 685, 773
XapI RAATTY 3 cut(s) 162, 200, 587
XceI RCATGY 3 cut(s) 32, 80, 977
XspI CTAG 1 cut(s) 138
Zsp2I ATGCAT 2 cut(s) 30, 952
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.