Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0000313

Physical Location & Seq

Genomic Coordinates Forward (+)

49016527 .. 49017872

Gene Structure 1346 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG271200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGTTTGTGTTTTTGAGTTGGAGAATTTAAGTGCATTTAATGGAGGTGGATTTGCTGAATTTGCAACTGCTAGTGAGAGTTTGACTGTTACTAGGCCGCCGGAAGTTTCAGCAGCCGAAGCTGCAGGGTTACCTATTGCAGGTATCACAGCTCACAAGTGTCTCACTCAAGCTGCAGGAGTCAAGCTGGACGGCACCGGCCCGCAGAAAAACATATTGGTTACTGCTGCCTCTGGAGGTGTAGGGCACTATGCAGTCCAACTAGCAAAGCTCGGGAACCATCATGTCACAGCCACTTGTGGAGCGCGTAACATTGATTTGGTCAAGAGCTTAGGCGCTGACGAGGTTCTTGACTACAAGACCCCTGAAGGGGCAGCTCTGAATAGCCCTTCTGGTCGGAAATATGATGCTGTGATCCACTGTACAACGGGCATTCCTTGGTCCACTTTTAATCCGAATTTGAGTCCAAATGGGAAGGTCATAGACATTACTCCCGGTCCAAGGGCTATGCTTACTTTCACTCTACAGAAACTCACCTGCTCCAAGAAGCAGCTGGTGCCGCTGCTGGTGATTCGCAAGGCTGAGAACCTGGAATATCTTGTTCAGTTGGTGAAGGAAGGAAAGCTCAAGACGGTGATCGACTCAACGCATCCTCTGAGCAAGGCTGAAGATGCTTGGGGTAAGAGCATCGACGGCCATGCTACTGGGAAGACCATTGTGGAGCCTAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N_2

Protein Analysis

243

Amino Acids

25.51

Weight (kDa)

8.22

Isoelectric Point (pI)

28.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_zinc_N	PF00107	80 - 204	3.3e-11	Zinc-binding dehydrogenase
ADH_zinc_N_2	PF13602	111 - 240	1.4e-20	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13010
fragaria_vesca	FvH4_2g18240 FvH4_2g18280 FvH4_2g18310 FvH4_2g18320 FvH4_2g18330 FvH4_2g18340 FvH4_2g18350
malus_domestica	MD05G1166800.v1.1 MD05G1167200.v1.1 MD05G1167300.v1.1 MD05G1167400.v1.1 MD05G1167600.v1.1 MD05G1168000.v1.1 MD05G1168200.v1.1 MD05G1168400.v1.1 MD05G1168600.v1.1 MD05G1168700.v1.1 MD05G1168800.v1.1 MD10G1156900.v1.1 MD10G1157000.v1.1 MD10G1157100.v1.1 MD10G1157200.v1.1
prunus_persica	Prupe.8G195100_v2.0.a1 Prupe.8G195100_v2.0.a1 Prupe.8G195300_v2.0.a1 Prupe.8G195600_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G196000_v2.0.a1 Prupe.8G196000_v2.0.a1
pyrus_communis	pycom05g15560 pycom05g15600 pycom05g15610 pycom05g15620 pycom05g15630 pycom10g13550 pycom10g13570
rosa_chinensis	RchiOBHm_Chr6g0283611 RchiOBHm_Chr6g0283631 RchiOBHm_Chr6g0283641 RchiOBHm_Chr6g0283661 RchiOBHm_Chr6g0283681 RchiOBHm_Chr6g0283691 RchiOBHm_Chr6g0283701 RchiOBHm_Chr6g0283711 RchiOBHm_Chr6g0283721
rosa_laevigata	RLG00000012804 RLG00000012807 RLG00000012811
rosa_multiflora	Rmu_co8263921.1_g000001 Rmu_sc0001521.1_g000009 Rmu_sc0002906.1_g000002 Rmu_sc0002906.1_g000011 Rmu_sc0002906.1_g000013 Rmu_sc0005719.1_g000016 Rmu_sc0005719.1_g000022 Rmu_sc0029460.1_g000001
rosa_roxburghii	Rroxscaffold_7G00185240 Rroxscaffold_7G00185250 Rroxscaffold_7G00185270 Rroxscaffold_7G00185280 Rroxscaffold_7G00185290 Rroxscaffold_7G00185330 Rroxscaffold_7G00185350
rosa_rugosa	Rorug06G0156100 Rorug06G0156300 Rorug06G0156400 Rorug06G0156500 Rorug06G0156600 Rorug06G0156700 Rorug06G0156800 Rorug06G0156900 Rorug06G0157000
rosa_samantha	Rh6AG267900 Rh6AG268100 Rh6AG268200 Rh6AG268400 Rh6AG268600 Rh6AG268700 Rh6AG268900 Rh6AG269100 Rh6BG270700 Rh6BG270900 Rh6BG271000 Rh6BG271200 Rh6BG271400 Rh6BG271500 Rh6CG270200 Rh6CG270400 Rh6CG270500 Rh6CG270800 Rh6CG270900 Rh6CG271000 Rh6CG271100 Rh6CG271300 Rh6DG263900 Rh6DG264100 Rh6DG264200 Rh6DG264400 Rh6DG264600 Rh6DG264800 Rh6DG265200
rosa_wichuraiana	Rw6G023210 Rw6G023220 Rw6G023230 Rw6G023240 Rw6G023250 Rw6G023260 Rw6G023270 Rw6G023280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	545
Acc36I	ACCTGC	2 cut(s)	131, 545
AccB1I	GGYRCC	2 cut(s)	194, 556
AccII	CGCG	1 cut(s)	307
AciI	CCGC	3 cut(s)	98, 203, 560
AclWI	GGATC	1 cut(s)	409
AcoI	YGGCCR	1 cut(s)	694
AcsI	RAATTY	3 cut(s)	25, 59, 457
AcuI	CTGAAG	2 cut(s)	387, 687
AfaI	GTAC	1 cut(s)	424
AfiI	CCNNNNNNNGG	4 cut(s)	140, 369, 370, 501
AjnI	CCWGG	1 cut(s)	588
AjuI	GAANNNNNNNTTGG	2 cut(s)	200, 232
AluBI	AGCT	9 cut(s)	122, 152, 173, 187, 271, 330, 377, 553, 625
AluI	AGCT	9 cut(s)	122, 152, 173, 187, 271, 330, 377, 553, 625
Alw26I	GTCTC	1 cut(s)	167
AlwI	GGATC	1 cut(s)	409
Ama87I	CYCGRG	1 cut(s)	272
AoxI	GGCC	3 cut(s)	95, 199, 694
ApeKI	GCWGC	7 cut(s)	113, 122, 173, 227, 374, 550, 562
ApoI	RAATTY	3 cut(s)	25, 59, 457
AspLEI	GCGC	2 cut(s)	307, 338
AspS9I	GGNCC	3 cut(s)	200, 441, 497
AsuC2I	CCSGG	1 cut(s)	495
AsuHPI	GGTGA	4 cut(s)	526, 580, 622, 646
AvaI	CYCGRG	1 cut(s)	272
AvaII	GGWCC	2 cut(s)	441, 497
BaeGI	GKGCMC	1 cut(s)	249
BanI	GGYRCC	2 cut(s)	194, 556
BbsI	GAAGAC	1 cut(s)	716
BbvI	GCAGC	7 cut(s)	109, 125, 160, 214, 386, 549, 562
BccI	CCATC	1 cut(s)	288
BceAI	ACGGC	2 cut(s)	208, 709
BcgI	CGANNNNNNTGC	2 cut(s)	680, 714
BciT130I	CCWGG	1 cut(s)	590
BcnI	CCSGG	1 cut(s)	495
BcoDI	GTCTC	1 cut(s)	167
BfaI	CTAG	3 cut(s)	72, 93, 263
BfmI	CTRYAG	3 cut(s)	123, 174, 524
BfoI	RGCGCY	1 cut(s)	339
BfuAI	ACCTGC	2 cut(s)	131, 545
BisI	GCNGC	9 cut(s)	98, 114, 123, 174, 228, 375, 551, 560, 563
BlsI	GCNGC	9 cut(s)	99, 115, 124, 175, 229, 376, 552, 561, 564
Bme1390I	CCNGG	2 cut(s)	495, 590
Bme18I	GGWCC	2 cut(s)	441, 497
BmeT110I	CYCGRG	1 cut(s)	272
BmgT120I	GGNCC	3 cut(s)	200, 441, 497
BmiI	GGNNCC	4 cut(s)	196, 278, 558, 723
BmrFI	CCNGG	2 cut(s)	495, 590
BmrI	ACTGGG	1 cut(s)	714
BmsI	GCATC	4 cut(s)	397, 658, 661, 696
BmuI	ACTGGG	1 cut(s)	714
BpiI	GAAGAC	1 cut(s)	716
BpmI	CTGGAG	1 cut(s)	255
Bpu10I	CCTNAGC	1 cut(s)	331
BpuEI	CTTGAG	2 cut(s)	153, 611
BpuMI	CCSGG	1 cut(s)	495
BsaJI	CCNNGG	2 cut(s)	437, 500
Bsc4I	CCNNNNNNNGG	4 cut(s)	140, 369, 370, 501
Bse118I	RCCGGY	1 cut(s)	197
Bse1I	ACTGG	1 cut(s)	709
BseBI	CCWGG	1 cut(s)	590
BseDI	CCNNGG	2 cut(s)	437, 500
BseGI	GGATG	1 cut(s)	649
BseLI	CCNNNNNNNGG	4 cut(s)	140, 369, 370, 501
BseMII	CTCAG	2 cut(s)	573, 647
BseNI	ACTGG	1 cut(s)	709
BseSI	GKGCMC	1 cut(s)	249
BseXI	GCAGC	7 cut(s)	109, 125, 160, 214, 386, 549, 562
Bsh1236I	CGCG	1 cut(s)	307
BshFI	GGCC	3 cut(s)	97, 201, 696
BshNI	GGYRCC	2 cut(s)	194, 556
BsiHKCI	CYCGRG	1 cut(s)	272
BsiSI	CCGG	3 cut(s)	101, 198, 495
BslI	CCNNNNNNNGG	4 cut(s)	140, 369, 370, 501
BsmAI	GTCTC	1 cut(s)	167
BsmI	GAATGC	1 cut(s)	432
BsnI	GGCC	3 cut(s)	97, 201, 696
BsoBI	CYCGRG	1 cut(s)	272
Bsp1286I	GDGCHC	1 cut(s)	249
Bsp1407I	TGTACA	1 cut(s)	422
Bsp143I	GATC	2 cut(s)	414, 636
BspACI	CCGC	3 cut(s)	98, 203, 560
BspANI	GGCC	3 cut(s)	97, 201, 696
BspCNI	CTCAG	2 cut(s)	574, 648
BspFNI	CGCG	1 cut(s)	307
BspLI	GGNNCC	4 cut(s)	196, 278, 558, 723
BspMAI	CTGCAG	2 cut(s)	127, 178
BspMI	ACCTGC	2 cut(s)	131, 545
BspPI	GGATC	1 cut(s)	409
BspT107I	GGYRCC	2 cut(s)	194, 556
BsrFI	RCCGGY	1 cut(s)	197
BsrGI	TGTACA	1 cut(s)	422
BsrI	ACTGG	1 cut(s)	709
BssAI	RCCGGY	1 cut(s)	197
BssECI	CCNNGG	2 cut(s)	437, 500
BssMI	GATC	2 cut(s)	414, 636
BssT1I	CCWWGG	2 cut(s)	437, 500
Bst2UI	CCWGG	1 cut(s)	590
Bst4CI	ACNGT	3 cut(s)	88, 422, 634
BstAPI	GCANNNNNTGC	1 cut(s)	556
BstAUI	TGTACA	1 cut(s)	422
BstC8I	GCNNGC	1 cut(s)	203
BstDEI	CTNAG	3 cut(s)	331, 582, 656
BstEII	GGTNACC	1 cut(s)	129
BstENI	CCTNNNNNAGG	1 cut(s)	138
BstF5I	GGATG	1 cut(s)	649
BstFNI	CGCG	1 cut(s)	307
BstH2I	RGCGCY	1 cut(s)	339
BstHHI	GCGC	2 cut(s)	307, 338
BstKTI	GATC	2 cut(s)	417, 639
BstMAI	GTCTC	1 cut(s)	167
BstMBI	GATC	2 cut(s)	414, 636
BstMWI	GCNNNNNNNGC	7 cut(s)	62, 119, 122, 556, 559, 671, 693
BstNI	CCWGG	1 cut(s)	590
BstPI	GGTNACC	1 cut(s)	129
BstSCI	CCNGG	2 cut(s)	493, 588
BstSFI	CTRYAG	3 cut(s)	123, 174, 524
BstSLI	GKGCMC	1 cut(s)	249
BstUI	CGCG	1 cut(s)	307
BstV1I	GCAGC	7 cut(s)	109, 125, 160, 214, 386, 549, 562
BstV2I	GAAGAC	1 cut(s)	716
BstXI	CCANNNNNNTGG	1 cut(s)	704
BsuRI	GGCC	3 cut(s)	97, 201, 696
BtsCI	GGATG	1 cut(s)	649
BtsIMutI	CAGTG	1 cut(s)	418
BveI	ACCTGC	2 cut(s)	131, 545
Cac8I	GCNNGC	1 cut(s)	203
CfoI	GCGC	2 cut(s)	307, 338
Cfr10I	RCCGGY	1 cut(s)	197
Cfr13I	GGNCC	3 cut(s)	200, 441, 497
Csp6I	GTAC	1 cut(s)	423
CviAII	CATG	2 cut(s)	284, 698
CviQI	GTAC	1 cut(s)	423
DdeI	CTNAG	3 cut(s)	331, 582, 656
DpnI	GATC	2 cut(s)	416, 638
DpnII	GATC	2 cut(s)	414, 636
EaeI	YGGCCR	1 cut(s)	694
Eco130I	CCWWGG	2 cut(s)	437, 500
Eco47I	GGWCC	2 cut(s)	441, 497
Eco57I	CTGAAG	2 cut(s)	387, 687
Eco88I	CYCGRG	1 cut(s)	272
Eco91I	GGTNACC	1 cut(s)	129
EcoNI	CCTNNNNNAGG	1 cut(s)	138
EcoO65I	GGTNACC	1 cut(s)	129
EcoRII	CCWGG	1 cut(s)	588
EcoT14I	CCWWGG	2 cut(s)	437, 500
ErhI	CCWWGG	2 cut(s)	437, 500
FaeI	CATG	2 cut(s)	287, 701
FaiI	YATR	7 cut(s)	215, 252, 285, 405, 482, 509, 699
FatI	CATG	2 cut(s)	283, 697
FauI	CCCGC	1 cut(s)	210
Fnu4HI	GCNGC	9 cut(s)	98, 114, 123, 174, 228, 375, 551, 560, 563
FokI	GGATG	1 cut(s)	636
Fsp4HI	GCNGC	9 cut(s)	98, 114, 123, 174, 228, 375, 551, 560, 563
FspBI	CTAG	3 cut(s)	72, 93, 263
GlaI	GCGC	2 cut(s)	306, 337
GluI	GCNGC	9 cut(s)	98, 114, 123, 174, 228, 375, 551, 560, 563
GsuI	CTGGAG	1 cut(s)	255
HaeII	RGCGCY	1 cut(s)	339
HaeIII	GGCC	3 cut(s)	97, 201, 696
HapII	CCGG	3 cut(s)	101, 198, 495
HhaI	GCGC	2 cut(s)	307, 338
Hin1II	CATG	2 cut(s)	287, 701
Hin6I	GCGC	2 cut(s)	305, 336
HinP1I	GCGC	2 cut(s)	305, 336
HinfI	GANTC	4 cut(s)	180, 463, 571, 641
HpaII	CCGG	3 cut(s)	101, 198, 495
HphI	GGTGA	4 cut(s)	526, 580, 622, 646
Hpy166II	GTNNAC	1 cut(s)	444
Hpy188I	TCNGA	4 cut(s)	381, 399, 456, 657
Hpy188III	TCNNGA	5 cut(s)	234, 274, 325, 350, 628
Hpy8I	GTNNAC	1 cut(s)	444
Hpy99I	CGWCG	1 cut(s)	695
HpyAV	CCTTC	5 cut(s)	362, 399, 469, 607, 611
HpyCH4III	ACNGT	3 cut(s)	88, 422, 634
HpyCH4V	TGCA	6 cut(s)	35, 65, 125, 140, 176, 254
HpyF10VI	GCNNNNNNNGC	7 cut(s)	62, 119, 122, 556, 559, 671, 693
HpyF3I	CTNAG	3 cut(s)	331, 582, 656
Hsp92II	CATG	2 cut(s)	287, 701
HspAI	GCGC	2 cut(s)	305, 336
Kzo9I	GATC	2 cut(s)	414, 636
LmnI	GCTCC	3 cut(s)	302, 545, 721
Lsp1109I	GCAGC	7 cut(s)	109, 125, 160, 214, 386, 549, 562
LweI	GCATC	4 cut(s)	397, 658, 661, 696
MaeI	CTAG	3 cut(s)	72, 93, 263
MaeIII	GTNAC	5 cut(s)	88, 129, 220, 286, 308
MalI	GATC	2 cut(s)	416, 638
MboI	GATC	2 cut(s)	414, 636
MboII	GAAGA	2 cut(s)	680, 721
MhlI	GDGCHC	1 cut(s)	249
MluCI	AATT	3 cut(s)	25, 59, 457
MlyI	GAGTC	3 cut(s)	189, 472, 635
MmeI	TCCRAC	2 cut(s)	283, 377
MnlI	CCTC	5 cut(s)	38, 230, 241, 337, 663
MseI	TTAA	3 cut(s)	29, 39, 450
MspA1I	CMGCKG	2 cut(s)	553, 562
MspI	CCGG	3 cut(s)	101, 198, 495
MspR9I	CCNGG	2 cut(s)	495, 590
Mva1269I	GAATGC	1 cut(s)	432
MvaI	CCWGG	1 cut(s)	590
MvnI	CGCG	1 cut(s)	307
MwoI	GCNNNNNNNGC	7 cut(s)	62, 119, 122, 556, 559, 671, 693
NciI	CCSGG	1 cut(s)	495
NdeII	GATC	2 cut(s)	414, 636
NlaIII	CATG	2 cut(s)	287, 701
NlaIV	GGNNCC	4 cut(s)	196, 278, 558, 723
NmuCI	GTSAC	1 cut(s)	286
PaqCI	CACCTGC	1 cut(s)	545
PctI	GAATGC	1 cut(s)	432
PfeI	GAWTC	1 cut(s)	571
PkrI	GCNGC	9 cut(s)	99, 115, 124, 175, 229, 376, 552, 561, 564
PleI	GAGTC	3 cut(s)	188, 471, 635
PpsI	GAGTC	3 cut(s)	188, 471, 635
Psp6I	CCWGG	1 cut(s)	588
PspEI	GGTNACC	1 cut(s)	129
PspGI	CCWGG	1 cut(s)	588
PspN4I	GGNNCC	4 cut(s)	196, 278, 558, 723
PspPI	GGNCC	3 cut(s)	200, 441, 497
PstI	CTGCAG	2 cut(s)	127, 178
PvuII	CAGCTG	1 cut(s)	553
RsaI	GTAC	1 cut(s)	424
RsaNI	GTAC	1 cut(s)	423
SaqAI	TTAA	3 cut(s)	29, 39, 450
SatI	GCNGC	9 cut(s)	98, 114, 123, 174, 228, 375, 551, 560, 563
Sau3AI	GATC	2 cut(s)	414, 636
Sau96I	GGNCC	3 cut(s)	200, 441, 497
SchI	GAGTC	3 cut(s)	189, 472, 635
ScrFI	CCNGG	2 cut(s)	495, 590
SduI	GDGCHC	1 cut(s)	249
SfaNI	GCATC	4 cut(s)	397, 658, 661, 696
SfcI	CTRYAG	3 cut(s)	123, 174, 524
SinI	GGWCC	2 cut(s)	441, 497
SmlI	CTYRAG	2 cut(s)	168, 626
SmoI	CTYRAG	2 cut(s)	168, 626
Sse9I	AATT	3 cut(s)	25, 59, 457
SsiI	CCGC	3 cut(s)	98, 203, 560
SspMI	CTAG	3 cut(s)	72, 93, 263
StyD4I	CCNGG	2 cut(s)	493, 588
StyI	CCWWGG	2 cut(s)	437, 500
TaaI	ACNGT	3 cut(s)	88, 422, 634
TaqI	TCGA	2 cut(s)	639, 690
TasI	AATT	3 cut(s)	25, 59, 457
TatI	WGTACW	1 cut(s)	422
TauI	GCSGC	2 cut(s)	100, 562
TfiI	GAWTC	1 cut(s)	571
Tru1I	TTAA	3 cut(s)	29, 39, 450
Tru9I	TTAA	3 cut(s)	29, 39, 450
TscAI	CASTG	1 cut(s)	425
TseFI	GTSAC	1 cut(s)	286
TseI	GCWGC	7 cut(s)	113, 122, 173, 227, 374, 550, 562
Tsp45I	GTSAC	1 cut(s)	286
TspRI	CASTG	1 cut(s)	425
VpaK11BI	GGWCC	2 cut(s)	441, 497
XagI	CCTNNNNNAGG	1 cut(s)	138
XapI	RAATTY	3 cut(s)	25, 59, 457
XcmI	CCANNNNNNNNNTGG	1 cut(s)	550
XspI	CTAG	3 cut(s)	72, 93, 263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.