Prupe.8G195700_v2.0.a1

Quinone-oxidoreductase homolog, chloroplastic

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0000313
Physical Location & Seq
Forward (+)
18773912 .. 18778045
4134 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G195700.1

Sequence Viewer

Length: 990 bp
ATGTCGGCCAAGCTTATGCATGCAATTCAATACGACAGCTATGGTGGAGGACCTTCTGGTTTAAAGCATGTCGGGGTTCCAATCCCTACCCCGAAGAAAAATGAGGTCTTGCTGAAATTAGAAGCAGCCAGTCTAAACCCAGTTGATTGGAAAATTCAAAAGGGCCAGTTGCGGCCTCTCTTCCCAGGAAAATTCCCTCAAATACCTGCAACTGATGTGGCTGGGGAGATTGTAGAGGTTGGACAAGGAGCCAAAAAGTTCAAGGTGGGTGACAAAGTTGTGGTATTGCTCAGCCATTTTAGTGGAGGTGGACTGGCTGAGTTTGCTTCAAGTAATGAGAGATTCATGGTTGCCAGGCCAGCTGAAGTGTCAGCAGCTGAAGGTGCAGGCTTACCTGTTGCCGGCATCACGGCTCACCAGGCTATCACCCAATCTGCAGGGATCAAGCTTGACGGAACTGGCAAGCAGAAGAACATATTGATCACTGCTGCCTCTGGTGGCGTTGGACACTATGCAGTCCAACTAGCAAAGCTCGGAAACACTCATGTCACAGCCACCTGTGGAGCTCGTAACGTCGAATTGGTTAAGAGCTTAGGGGCAGATGAAGTTCTTGACTACAAGACCCCGGATGGGGCAGCTCTGAAGAGCCCGTCTGGCCGGAAATATGATGCTGTGATCAACTGTGCAACCGGCATCGCTTGGTTAACTTTTGAGCCTAATTTGAGTGCAAAAGGGAAAGTTATAGACATTGCCCCAAATGCAAGTTCTTTCACTACATTTCTTTTGAAGAAACTCACTTTCTCCAAGAAGTCCTTGGTGCCATTGCTCATGATCCCCAAGGCTGAGAGCTTGGATTATCTTGTTAATTTGGTGAAGGAAGGAAAGCTCAAGACGGTGATCGACTCAAAGCATCCCATAAGCAAGGCTGAAGATGCTTGGGCTAAGAGTATTGATGGCCATGCTACGGGGAAGATCATTGTGGAGCCTTAG

Protein Analysis

330

Amino Acids

34.55

Weight (kDa)

9.37

Isoelectric Point (pI)

24.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000313)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G13010
fragaria_vesca FvH4_2g18240 FvH4_2g18280 FvH4_2g18310 FvH4_2g18320 FvH4_2g18330 FvH4_2g18340 FvH4_2g18350
malus_domestica MD05G1166800.v1.1 MD05G1167200.v1.1 MD05G1167300.v1.1 MD05G1167400.v1.1 MD05G1167600.v1.1 MD05G1168000.v1.1 MD05G1168200.v1.1 MD05G1168400.v1.1 MD05G1168600.v1.1 MD05G1168700.v1.1 MD05G1168800.v1.1 MD10G1156900.v1.1 MD10G1157000.v1.1 MD10G1157100.v1.1 MD10G1157200.v1.1
prunus_persica Prupe.8G195100_v2.0.a1 Prupe.8G195100_v2.0.a1 Prupe.8G195300_v2.0.a1 Prupe.8G195600_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G196000_v2.0.a1 Prupe.8G196000_v2.0.a1
pyrus_communis pycom05g15560 pycom05g15600 pycom05g15610 pycom05g15620 pycom05g15630 pycom10g13550 pycom10g13570
rosa_chinensis RchiOBHm_Chr6g0283611 RchiOBHm_Chr6g0283631 RchiOBHm_Chr6g0283641 RchiOBHm_Chr6g0283661 RchiOBHm_Chr6g0283681 RchiOBHm_Chr6g0283691 RchiOBHm_Chr6g0283701 RchiOBHm_Chr6g0283711 RchiOBHm_Chr6g0283721
rosa_laevigata RLG00000012804 RLG00000012807 RLG00000012811
rosa_multiflora Rmu_co8263921.1_g000001 Rmu_sc0001521.1_g000009 Rmu_sc0002906.1_g000002 Rmu_sc0002906.1_g000011 Rmu_sc0002906.1_g000013 Rmu_sc0005719.1_g000016 Rmu_sc0005719.1_g000022 Rmu_sc0029460.1_g000001
rosa_roxburghii Rroxscaffold_7G00185240 Rroxscaffold_7G00185250 Rroxscaffold_7G00185270 Rroxscaffold_7G00185280 Rroxscaffold_7G00185290 Rroxscaffold_7G00185330 Rroxscaffold_7G00185350
rosa_rugosa Rorug06G0156100 Rorug06G0156300 Rorug06G0156400 Rorug06G0156500 Rorug06G0156600 Rorug06G0156700 Rorug06G0156800 Rorug06G0156900 Rorug06G0157000
rosa_samantha Rh6AG267900 Rh6AG268100 Rh6AG268200 Rh6AG268400 Rh6AG268600 Rh6AG268700 Rh6AG268900 Rh6AG269100 Rh6BG270700 Rh6BG270900 Rh6BG271000 Rh6BG271200 Rh6BG271400 Rh6BG271500 Rh6CG270200 Rh6CG270400 Rh6CG270500 Rh6CG270800 Rh6CG270900 Rh6CG271000 Rh6CG271100 Rh6CG271300 Rh6DG263900 Rh6DG264100 Rh6DG264200 Rh6DG264400 Rh6DG264600 Rh6DG264800 Rh6DG265200
rosa_wichuraiana Rw6G023210 Rw6G023220 Rw6G023230 Rw6G023240 Rw6G023250 Rw6G023260 Rw6G023270 Rw6G023280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 214
AccB1I GGYRCC 1 cut(s) 817
AciI CCGC 1 cut(s) 172
AclWI GGATC 2 cut(s) 449, 826
AcoI YGGCCR 3 cut(s) 6, 655, 955
AcsI RAATTY 2 cut(s) 153, 191
AcuI CTGAAG 4 cut(s) 384, 399, 662, 948
AfiI CCNNNNNNNGG 4 cut(s) 401, 630, 631, 964
AgsI TTSAA 5 cut(s) 29, 158, 262, 330, 787
AjnI CCWGG 3 cut(s) 184, 353, 417
AjuI GAANNNNNNNTTGG 2 cut(s) 748, 780
Alw21I GWGCWC 1 cut(s) 568
AlwI GGATC 2 cut(s) 449, 826
AlwNI CAGNNNCTG 1 cut(s) 377
AoxI GGCC 6 cut(s) 6, 163, 173, 356, 655, 955
ApeKI GCWGC 4 cut(s) 125, 374, 488, 635
ApoI RAATTY 2 cut(s) 153, 191
AspS9I GGNCC 2 cut(s) 50, 163
AsuC2I CCSGG 1 cut(s) 626
AsuHPI GGTGA 5 cut(s) 281, 407, 418, 883, 907
AvaII GGWCC 1 cut(s) 50
BalI TGGCCA 1 cut(s) 957
BanI GGYRCC 1 cut(s) 817
BanII GRGCYC 2 cut(s) 568, 650
Bbv12I GWGCWC 1 cut(s) 568
BbvI GCAGC 4 cut(s) 137, 386, 475, 647
BccI CCATC 2 cut(s) 623, 947
BceAI ACGGC 1 cut(s) 426
BciT130I CCWGG 3 cut(s) 186, 355, 419
BclI TGATCA 2 cut(s) 480, 675
BcnI CCSGG 1 cut(s) 626
BfaI CTAG 1 cut(s) 524
BfmI CTRYAG 1 cut(s) 435
BfuAI ACCTGC 1 cut(s) 214
BglI GCCNNNNNGGC 1 cut(s) 654
BisI GCNGC 5 cut(s) 126, 173, 375, 489, 636
BlpI GCTNAGC 1 cut(s) 290
BlsI GCNGC 5 cut(s) 127, 174, 376, 490, 637
Bme1390I CCNGG 4 cut(s) 186, 355, 419, 626
Bme18I GGWCC 1 cut(s) 50
BmgT120I GGNCC 2 cut(s) 50, 163
BmiI GGNNCC 4 cut(s) 78, 250, 819, 984
BmrFI CCNGG 4 cut(s) 186, 355, 419, 626
BmrI ACTGGG 1 cut(s) 134
BmsI GCATC 5 cut(s) 414, 658, 702, 919, 922
BmuI ACTGGG 1 cut(s) 134
Bpu10I CCTNAGC 1 cut(s) 592
Bpu1102I GCTNAGC 1 cut(s) 290
BpuEI CTTGAG 1 cut(s) 872
BpuMI CCSGG 1 cut(s) 626
BsaJI CCNNGG 4 cut(s) 184, 624, 813, 837
Bsc4I CCNNNNNNNGG 4 cut(s) 401, 630, 631, 964
Bse118I RCCGGY 2 cut(s) 401, 689
Bse1I ACTGG 5 cut(s) 129, 140, 166, 318, 463
Bse3DI GCAATG 2 cut(s) 747, 821
BseBI CCWGG 3 cut(s) 186, 355, 419
BseDI CCNNGG 4 cut(s) 184, 624, 813, 837
BseGI GGATG 2 cut(s) 634, 910
BseLI CCNNNNNNNGG 4 cut(s) 401, 630, 631, 964
BseMI GCAATG 2 cut(s) 747, 821
BseMII CTCAG 3 cut(s) 304, 309, 834
BseNI ACTGG 5 cut(s) 129, 140, 166, 318, 463
BseXI GCAGC 4 cut(s) 137, 386, 475, 647
BseYI CCCAGC 1 cut(s) 221
BsgI GTGCAG 1 cut(s) 405
BshFI GGCC 6 cut(s) 8, 165, 175, 358, 657, 957
BshNI GGYRCC 1 cut(s) 817
BsiHKAI GWGCWC 1 cut(s) 568
BsiSI CCGG 4 cut(s) 402, 626, 658, 690
BslI CCNNNNNNNGG 4 cut(s) 401, 630, 631, 964
BsnI GGCC 6 cut(s) 8, 165, 175, 358, 657, 957
Bsp1286I GDGCHC 2 cut(s) 568, 650
Bsp143I GATC 6 cut(s) 441, 480, 675, 831, 897, 972
Bsp1720I GCTNAGC 1 cut(s) 290
BspACI CCGC 1 cut(s) 172
BspANI GGCC 6 cut(s) 8, 165, 175, 358, 657, 957
BspCNI CTCAG 3 cut(s) 303, 310, 835
BspHI TCATGA 1 cut(s) 828
BspLI GGNNCC 4 cut(s) 78, 250, 819, 984
BspMAI CTGCAG 1 cut(s) 439
BspMI ACCTGC 1 cut(s) 214
BspPI GGATC 2 cut(s) 449, 826
BspQI GCTCTTC 1 cut(s) 638
BspT107I GGYRCC 1 cut(s) 817
BsrDI GCAATG 2 cut(s) 747, 821
BsrFI RCCGGY 2 cut(s) 401, 689
BsrI ACTGG 5 cut(s) 129, 140, 166, 318, 463
BssAI RCCGGY 2 cut(s) 401, 689
BssECI CCNNGG 4 cut(s) 184, 624, 813, 837
BssMI GATC 6 cut(s) 441, 480, 675, 831, 897, 972
BssT1I CCWWGG 2 cut(s) 813, 837
Bst2UI CCWGG 3 cut(s) 186, 355, 419
Bst4CI ACNGT 2 cut(s) 683, 895
Bst6I CTCTTC 2 cut(s) 185, 638
BstC8I GCNNGC 5 cut(s) 21, 360, 388, 403, 464
BstDEI CTNAG 6 cut(s) 290, 318, 592, 843, 942, 987
BstF5I GGATG 2 cut(s) 634, 910
BstKTI GATC 6 cut(s) 444, 483, 678, 834, 900, 975
BstMBI GATC 6 cut(s) 441, 480, 675, 831, 897, 972
BstMWI GCNNNNNNNGC 7 cut(s) 323, 359, 383, 419, 654, 758, 932
BstNI CCWGG 3 cut(s) 186, 355, 419
BstNSI RCATGY 2 cut(s) 23, 71
BstSCI CCNGG 4 cut(s) 184, 353, 417, 624
BstSFI CTRYAG 1 cut(s) 435
BstV1I GCAGC 4 cut(s) 137, 386, 475, 647
BstXI CCANNNNNNTGG 2 cut(s) 147, 302
BsuRI GGCC 6 cut(s) 8, 165, 175, 358, 657, 957
BtgZI GCGATG 1 cut(s) 679
BtsCI GGATG 2 cut(s) 634, 910
BtsI GCAGTG 1 cut(s) 483
BtsIMutI CAGTG 1 cut(s) 483
BveI ACCTGC 1 cut(s) 214
Cac8I GCNNGC 5 cut(s) 21, 360, 388, 403, 464
CaiI CAGNNNCTG 1 cut(s) 377
CciI TCATGA 1 cut(s) 828
Cfr10I RCCGGY 2 cut(s) 401, 689
Cfr13I GGNCC 2 cut(s) 50, 163
CspCI CAANNNNNGTGG 2 cut(s) 198, 233
CviAII CATG 6 cut(s) 20, 68, 346, 545, 829, 959
DdeI CTNAG 6 cut(s) 290, 318, 592, 843, 942, 987
DpnI GATC 6 cut(s) 443, 482, 677, 833, 899, 974
DpnII GATC 6 cut(s) 441, 480, 675, 831, 897, 972
DraI TTTAAA 1 cut(s) 63
EaeI YGGCCR 3 cut(s) 6, 655, 955
Eam1104I CTCTTC 2 cut(s) 185, 638
EarI CTCTTC 2 cut(s) 185, 638
Ecl136II GAGCTC 1 cut(s) 566
Eco130I CCWWGG 2 cut(s) 813, 837
Eco24I GRGCYC 2 cut(s) 568, 650
Eco47I GGWCC 1 cut(s) 50
Eco53kI GAGCTC 1 cut(s) 566
Eco57I CTGAAG 4 cut(s) 384, 399, 662, 948
EcoICRI GAGCTC 1 cut(s) 566
EcoO109I RGGNCCY 1 cut(s) 50
EcoRII CCWGG 3 cut(s) 184, 353, 417
EcoT14I CCWWGG 2 cut(s) 813, 837
EcoT22I ATGCAT 1 cut(s) 21
EcoT38I GRGCYC 2 cut(s) 568, 650
ErhI CCWWGG 2 cut(s) 813, 837
FaeI CATG 6 cut(s) 23, 71, 349, 548, 832, 962
FalI AAGNNNNNCTT 2 cut(s) 797, 829
FatI CATG 6 cut(s) 19, 67, 345, 544, 828, 958
FbaI TGATCA 2 cut(s) 480, 675
Fnu4HI GCNGC 5 cut(s) 126, 173, 375, 489, 636
FokI GGATG 2 cut(s) 641, 897
FriOI GRGCYC 2 cut(s) 568, 650
Fsp4HI GCNGC 5 cut(s) 126, 173, 375, 489, 636
FspBI CTAG 1 cut(s) 524
GluI GCNGC 5 cut(s) 126, 173, 375, 489, 636
GsaI CCCAGC 1 cut(s) 225
HaeIII GGCC 6 cut(s) 8, 165, 175, 358, 657, 957
HapII CCGG 4 cut(s) 402, 626, 658, 690
Hin1II CATG 6 cut(s) 23, 71, 349, 548, 832, 962
HincII GTYRAC 1 cut(s) 705
HindII GTYRAC 1 cut(s) 705
HindIII AAGCTT 2 cut(s) 11, 446
HinfI GANTC 2 cut(s) 342, 902
HpaI GTTAAC 1 cut(s) 705
HpaII CCGG 4 cut(s) 402, 626, 658, 690
HphI GGTGA 5 cut(s) 281, 407, 418, 883, 907
Hpy166II GTNNAC 2 cut(s) 311, 705
Hpy188I TCNGA 2 cut(s) 536, 642
Hpy188III TCNNGA 3 cut(s) 611, 829, 889
Hpy8I GTNNAC 2 cut(s) 311, 705
Hpy99I CGWCG 1 cut(s) 578
HpyAV CCTTC 4 cut(s) 63, 374, 868, 872
HpyCH4III ACNGT 2 cut(s) 683, 895
HpyCH4IV ACGT 1 cut(s) 573
HpyCH4V TGCA 9 cut(s) 19, 23, 209, 386, 437, 515, 686, 728, 761
HpyF10VI GCNNNNNNNGC 7 cut(s) 323, 359, 383, 419, 654, 758, 932
HpyF3I CTNAG 6 cut(s) 290, 318, 592, 843, 942, 987
HpySE526I ACGT 1 cut(s) 573
Hsp92II CATG 6 cut(s) 23, 71, 349, 548, 832, 962
KroI GCCGGC 1 cut(s) 401
KroNI GCCGGC 1 cut(s) 403
Ksp22I TGATCA 2 cut(s) 480, 675
KspAI GTTAAC 1 cut(s) 705
Kzo9I GATC 6 cut(s) 441, 480, 675, 831, 897, 972
LguI GCTCTTC 1 cut(s) 638
LmnI GCTCC 3 cut(s) 248, 563, 982
Lsp1109I GCAGC 4 cut(s) 137, 386, 475, 647
LweI GCATC 5 cut(s) 414, 658, 702, 919, 922
MaeI CTAG 1 cut(s) 524
MaeII ACGT 1 cut(s) 573
MaeIII GTNAC 3 cut(s) 269, 547, 569
MalI GATC 6 cut(s) 443, 482, 677, 833, 899, 974
MboI GATC 6 cut(s) 441, 480, 675, 831, 897, 972
MboII GAAGA 7 cut(s) 106, 172, 481, 655, 799, 941, 982
MhlI GDGCHC 2 cut(s) 568, 650
MlsI TGGCCA 1 cut(s) 957
MluCI AATT 7 cut(s) 24, 116, 153, 191, 578, 718, 865
MluNI TGGCCA 1 cut(s) 957
MlyI GAGTC 1 cut(s) 896
MmeI TCCRAC 3 cut(s) 220, 484, 544
MnlI CCTC 7 cut(s) 41, 97, 186, 207, 229, 299, 502
Mox20I TGGCCA 1 cut(s) 957
Mph1103I ATGCAT 1 cut(s) 21
MroNI GCCGGC 1 cut(s) 401
MscI TGGCCA 1 cut(s) 957
MseI TTAA 4 cut(s) 62, 585, 704, 864
MslI CAYNNNNRTG 1 cut(s) 300
Msp20I TGGCCA 1 cut(s) 957
MspA1I CMGCKG 2 cut(s) 362, 377
MspI CCGG 4 cut(s) 402, 626, 658, 690
MspR9I CCNGG 4 cut(s) 186, 355, 419, 626
MvaI CCWGG 3 cut(s) 186, 355, 419
MwoI GCNNNNNNNGC 7 cut(s) 323, 359, 383, 419, 654, 758, 932
NaeI GCCGGC 1 cut(s) 403
NciI CCSGG 1 cut(s) 626
NdeII GATC 6 cut(s) 441, 480, 675, 831, 897, 972
NgoMIV GCCGGC 1 cut(s) 401
NlaIII CATG 6 cut(s) 23, 71, 349, 548, 832, 962
NlaIV GGNNCC 4 cut(s) 78, 250, 819, 984
NmuCI GTSAC 2 cut(s) 269, 547
NsiI ATGCAT 1 cut(s) 21
NspI RCATGY 2 cut(s) 23, 71
PaeI GCATGC 1 cut(s) 23
PagI TCATGA 1 cut(s) 828
PciSI GCTCTTC 1 cut(s) 638
PdiI GCCGGC 1 cut(s) 403
PfeI GAWTC 1 cut(s) 342
PkrI GCNGC 5 cut(s) 127, 174, 376, 490, 637
PleI GAGTC 1 cut(s) 896
PpsI GAGTC 1 cut(s) 896
PpuMI RGGWCCY 1 cut(s) 50
Psp124BI GAGCTC 1 cut(s) 568
Psp5II RGGWCCY 1 cut(s) 50
Psp6I CCWGG 3 cut(s) 184, 353, 417
PspFI CCCAGC 1 cut(s) 221
PspGI CCWGG 3 cut(s) 184, 353, 417
PspN4I GGNNCC 4 cut(s) 78, 250, 819, 984
PspPI GGNCC 2 cut(s) 50, 163
PspPPI RGGWCCY 1 cut(s) 50
PstI CTGCAG 1 cut(s) 439
PstNI CAGNNNCTG 1 cut(s) 377
PvuII CAGCTG 2 cut(s) 362, 377
RseI CAYNNNNRTG 1 cut(s) 300
SacI GAGCTC 1 cut(s) 568
SapI GCTCTTC 1 cut(s) 638
SaqAI TTAA 4 cut(s) 62, 585, 704, 864
SatI GCNGC 5 cut(s) 126, 173, 375, 489, 636
Sau3AI GATC 6 cut(s) 441, 480, 675, 831, 897, 972
Sau96I GGNCC 2 cut(s) 50, 163
SchI GAGTC 1 cut(s) 896
ScrFI CCNGG 4 cut(s) 186, 355, 419, 626
SduI GDGCHC 2 cut(s) 568, 650
SfaNI GCATC 5 cut(s) 414, 658, 702, 919, 922
SfcI CTRYAG 1 cut(s) 435
SinI GGWCC 1 cut(s) 50
SmiMI CAYNNNNRTG 1 cut(s) 300
SmlI CTYRAG 1 cut(s) 887
SmoI CTYRAG 1 cut(s) 887
SphI GCATGC 1 cut(s) 23
Sse9I AATT 7 cut(s) 24, 116, 153, 191, 578, 718, 865
SsiI CCGC 1 cut(s) 172
SspMI CTAG 1 cut(s) 524
SstI GAGCTC 1 cut(s) 568
StyD4I CCNGG 4 cut(s) 184, 353, 417, 624
StyI CCWWGG 2 cut(s) 813, 837
TaaI ACNGT 2 cut(s) 683, 895
TaiI ACGT 1 cut(s) 576
TaqI TCGA 2 cut(s) 576, 900
TasI AATT 7 cut(s) 24, 116, 153, 191, 578, 718, 865
TauI GCSGC 1 cut(s) 175
TfiI GAWTC 1 cut(s) 342
Tru1I TTAA 4 cut(s) 62, 585, 704, 864
Tru9I TTAA 4 cut(s) 62, 585, 704, 864
TscAI CASTG 1 cut(s) 490
TseFI GTSAC 2 cut(s) 269, 547
TseI GCWGC 4 cut(s) 125, 374, 488, 635
Tsp45I GTSAC 2 cut(s) 269, 547
TspDTI ATGAA 2 cut(s) 334, 618
TspGWI ACGGA 1 cut(s) 468
TspRI CASTG 1 cut(s) 490
VpaK11BI GGWCC 1 cut(s) 50
XapI RAATTY 2 cut(s) 153, 191
XceI RCATGY 2 cut(s) 23, 71
XcmI CCANNNNNNNNNTGG 1 cut(s) 811
XspI CTAG 1 cut(s) 524
Zsp2I ATGCAT 1 cut(s) 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.