Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0000313

Physical Location & Seq

Genomic Coordinates Forward (+)

24551261 .. 24552373

Gene Structure 1113 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1156900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGGGTTCACTTCATGGTGCATACAAAAATTCCTTTTTTCTCGCAGTTCCCACCCTCTGAGTCTCCGGTTTGCAGCCATGGCAGTGAAGGTTATGCAGGCGATTCAGTACAAAAGATATGGCGGAGGACCTTCTGATTTGAAGGTTGGACAAGGAGTCAAGAAGTTCAAGGTGGGTGACAAAGTTGTGGCATTACTTGGCTATAGTAATGGTGGTGGACTAGCTGAGCTAGCCGCAGCCAAAGAGAAATTAGTAGTTGCTAGGTCTCCTGAAGTTTCGGCAGCTGAAGGTTCCAGCTTACCTGTTGCCCGTCTCTCAGCACACCAGGCTCTCAGCAAGGATGCAGGGATCAAGCTTGATGGAAGCGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N_2

Protein Analysis

124

Amino Acids

12.85

Weight (kDa)

9.95

Isoelectric Point (pI)

25.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13010
fragaria_vesca	FvH4_2g18240 FvH4_2g18280 FvH4_2g18310 FvH4_2g18320 FvH4_2g18330 FvH4_2g18340 FvH4_2g18350
malus_domestica	MD05G1166800.v1.1 MD05G1167200.v1.1 MD05G1167300.v1.1 MD05G1167400.v1.1 MD05G1167600.v1.1 MD05G1168000.v1.1 MD05G1168200.v1.1 MD05G1168400.v1.1 MD05G1168600.v1.1 MD05G1168700.v1.1 MD05G1168800.v1.1 MD10G1156900.v1.1 MD10G1157000.v1.1 MD10G1157100.v1.1 MD10G1157200.v1.1
prunus_persica	Prupe.8G195100_v2.0.a1 Prupe.8G195100_v2.0.a1 Prupe.8G195300_v2.0.a1 Prupe.8G195600_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G196000_v2.0.a1 Prupe.8G196000_v2.0.a1
pyrus_communis	pycom05g15560 pycom05g15600 pycom05g15610 pycom05g15620 pycom05g15630 pycom10g13550 pycom10g13570
rosa_chinensis	RchiOBHm_Chr6g0283611 RchiOBHm_Chr6g0283631 RchiOBHm_Chr6g0283641 RchiOBHm_Chr6g0283661 RchiOBHm_Chr6g0283681 RchiOBHm_Chr6g0283691 RchiOBHm_Chr6g0283701 RchiOBHm_Chr6g0283711 RchiOBHm_Chr6g0283721
rosa_laevigata	RLG00000012804 RLG00000012807 RLG00000012811
rosa_multiflora	Rmu_co8263921.1_g000001 Rmu_sc0001521.1_g000009 Rmu_sc0002906.1_g000002 Rmu_sc0002906.1_g000011 Rmu_sc0002906.1_g000013 Rmu_sc0005719.1_g000016 Rmu_sc0005719.1_g000022 Rmu_sc0029460.1_g000001
rosa_roxburghii	Rroxscaffold_7G00185240 Rroxscaffold_7G00185250 Rroxscaffold_7G00185270 Rroxscaffold_7G00185280 Rroxscaffold_7G00185290 Rroxscaffold_7G00185330 Rroxscaffold_7G00185350
rosa_rugosa	Rorug06G0156100 Rorug06G0156300 Rorug06G0156400 Rorug06G0156500 Rorug06G0156600 Rorug06G0156700 Rorug06G0156800 Rorug06G0156900 Rorug06G0157000
rosa_samantha	Rh6AG267900 Rh6AG268100 Rh6AG268200 Rh6AG268400 Rh6AG268600 Rh6AG268700 Rh6AG268900 Rh6AG269100 Rh6BG270700 Rh6BG270900 Rh6BG271000 Rh6BG271200 Rh6BG271400 Rh6BG271500 Rh6CG270200 Rh6CG270400 Rh6CG270500 Rh6CG270800 Rh6CG270900 Rh6CG271000 Rh6CG271100 Rh6CG271300 Rh6DG263900 Rh6DG264100 Rh6DG264200 Rh6DG264400 Rh6DG264600 Rh6DG264800 Rh6DG265200
rosa_wichuraiana	Rw6G023210 Rw6G023220 Rw6G023230 Rw6G023240 Rw6G023250 Rw6G023260 Rw6G023270 Rw6G023280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	123, 234, 366
AclWI	GGATC	1 cut(s)	356
AcsI	RAATTY	1 cut(s)	29
AcuI	CTGAAG	2 cut(s)	291, 306
AfaI	GTAC	1 cut(s)	110
AgsI	TTSAA	2 cut(s)	142, 169
AhdI	GACNNNNNGTC	1 cut(s)	155
AjnI	CCWGG	1 cut(s)	324
AluBI	AGCT	5 cut(s)	224, 229, 284, 297, 355
AluI	AGCT	5 cut(s)	224, 229, 284, 297, 355
Alw26I	GTCTC	3 cut(s)	68, 270, 317
AlwI	GGATC	1 cut(s)	356
ApeKI	GCWGC	3 cut(s)	74, 236, 281
ApoI	RAATTY	1 cut(s)	29
AspS9I	GGNCC	1 cut(s)	128
AsuHPI	GGTGA	1 cut(s)	188
AsuNHI	GCTAGC	1 cut(s)	229
AvaII	GGWCC	1 cut(s)	128
BbvI	GCAGC	3 cut(s)	86, 248, 293
BccI	CCATC	1 cut(s)	353
BciT130I	CCWGG	1 cut(s)	326
BcoDI	GTCTC	3 cut(s)	68, 270, 317
BfaI	CTAG	4 cut(s)	221, 230, 261, 370
BfmI	CTRYAG	1 cut(s)	202
BisI	GCNGC	5 cut(s)	75, 234, 237, 282, 367
BlpI	GCTNAGC	1 cut(s)	225
BlsI	GCNGC	5 cut(s)	76, 235, 238, 283, 368
Bme1390I	CCNGG	1 cut(s)	326
Bme18I	GGWCC	1 cut(s)	128
BmeRI	GACNNNNNGTC	1 cut(s)	155
BmgT120I	GGNCC	1 cut(s)	128
BmiI	GGNNCC	1 cut(s)	292
BmrFI	CCNGG	1 cut(s)	326
BmsI	GCATC	1 cut(s)	331
BmtI	GCTAGC	1 cut(s)	233
Bpu1102I	GCTNAGC	1 cut(s)	225
BsaI	GGTCTC	1 cut(s)	270
BsaJI	CCNNGG	1 cut(s)	78
BsaWI	WCCGGW	1 cut(s)	66
BseBI	CCWGG	1 cut(s)	326
BseDI	CCNNGG	1 cut(s)	78
BseGI	GGATG	1 cut(s)	346
BseMII	CTCAG	4 cut(s)	50, 216, 330, 346
BseXI	GCAGC	3 cut(s)	86, 248, 293
BsiSI	CCGG	1 cut(s)	67
BsmAI	GTCTC	3 cut(s)	68, 270, 317
BsmBI	CGTCTC	1 cut(s)	317
Bso31I	GGTCTC	1 cut(s)	270
Bsp143I	GATC	1 cut(s)	348
Bsp1720I	GCTNAGC	1 cut(s)	225
Bsp19I	CCATGG	1 cut(s)	78
BspACI	CCGC	3 cut(s)	123, 234, 366
BspCNI	CTCAG	4 cut(s)	51, 217, 329, 345
BspLI	GGNNCC	1 cut(s)	292
BspOI	GCTAGC	1 cut(s)	233
BspPI	GGATC	1 cut(s)	356
BspTNI	GGTCTC	1 cut(s)	270
BssECI	CCNNGG	1 cut(s)	78
BssMI	GATC	1 cut(s)	348
BssT1I	CCWWGG	1 cut(s)	78
Bst2UI	CCWGG	1 cut(s)	326
BstC8I	GCNNGC	2 cut(s)	99, 231
BstDEI	CTNAG	4 cut(s)	59, 225, 316, 332
BstDSI	CCRYGG	1 cut(s)	78
BstF5I	GGATG	1 cut(s)	346
BstKTI	GATC	1 cut(s)	351
BstMAI	GTCTC	3 cut(s)	68, 270, 317
BstMBI	GATC	1 cut(s)	348
BstMWI	GCNNNNNNNGC	3 cut(s)	80, 230, 326
BstNI	CCWGG	1 cut(s)	326
BstSCI	CCNGG	1 cut(s)	324
BstSFI	CTRYAG	1 cut(s)	202
BstV1I	GCAGC	3 cut(s)	86, 248, 293
BtgI	CCRYGG	1 cut(s)	78
BtsCI	GGATG	1 cut(s)	346
BtsI	GCAGTG	1 cut(s)	90
BtsIMutI	CAGTG	1 cut(s)	90
Cac8I	GCNNGC	2 cut(s)	99, 231
Cfr13I	GGNCC	1 cut(s)	128
Csp6I	GTAC	1 cut(s)	109
CviAII	CATG	2 cut(s)	15, 79
CviQI	GTAC	1 cut(s)	109
DdeI	CTNAG	4 cut(s)	59, 225, 316, 332
DpnI	GATC	1 cut(s)	350
DpnII	GATC	1 cut(s)	348
DriI	GACNNNNNGTC	1 cut(s)	155
Eam1105I	GACNNNNNGTC	1 cut(s)	155
EciI	GGCGGA	1 cut(s)	138
Eco130I	CCWWGG	1 cut(s)	78
Eco31I	GGTCTC	1 cut(s)	270
Eco47I	GGWCC	1 cut(s)	128
Eco57I	CTGAAG	2 cut(s)	291, 306
EcoO109I	RGGNCCY	1 cut(s)	128
EcoRII	CCWGG	1 cut(s)	324
EcoT14I	CCWWGG	1 cut(s)	78
ErhI	CCWWGG	1 cut(s)	78
Esp3I	CGTCTC	1 cut(s)	317
FaeI	CATG	2 cut(s)	18, 82
FaiI	YATR	6 cut(s)	16, 23, 80, 95, 120, 204
FatI	CATG	2 cut(s)	14, 78
Fnu4HI	GCNGC	5 cut(s)	75, 234, 237, 282, 367
FokI	GGATG	1 cut(s)	353
Fsp4HI	GCNGC	5 cut(s)	75, 234, 237, 282, 367
FspBI	CTAG	4 cut(s)	221, 230, 261, 370
GluI	GCNGC	5 cut(s)	75, 234, 237, 282, 367
HapII	CCGG	1 cut(s)	67
Hin1II	CATG	2 cut(s)	18, 82
HindIII	AAGCTT	1 cut(s)	353
HinfI	GANTC	3 cut(s)	61, 103, 156
HpaII	CCGG	1 cut(s)	67
HphI	GGTGA	1 cut(s)	188
Hpy166II	GTNNAC	2 cut(s)	9, 218
Hpy188I	TCNGA	2 cut(s)	60, 136
Hpy188III	TCNNGA	2 cut(s)	160, 269
Hpy8I	GTNNAC	2 cut(s)	9, 218
HpyAV	CCTTC	4 cut(s)	82, 136, 141, 281
HpyCH4V	TGCA	4 cut(s)	21, 74, 97, 344
HpyF10VI	GCNNNNNNNGC	3 cut(s)	80, 230, 326
HpyF3I	CTNAG	4 cut(s)	59, 225, 316, 332
Hsp92II	CATG	2 cut(s)	18, 82
Kzo9I	GATC	1 cut(s)	348
LpnPI	CCDG	8 cut(s)	80, 83, 282, 307, 311, 315, 330, 338
Lsp1109I	GCAGC	3 cut(s)	86, 248, 293
LweI	GCATC	1 cut(s)	331
MaeI	CTAG	4 cut(s)	221, 230, 261, 370
MaeIII	GTNAC	1 cut(s)	176
MalI	GATC	1 cut(s)	350
MboI	GATC	1 cut(s)	348
MluCI	AATT	2 cut(s)	29, 248
MlyI	GAGTC	2 cut(s)	70, 165
MmeI	TCCRAC	1 cut(s)	127
MnlI	CCTC	2 cut(s)	66, 119
MslI	CAYNNNNRTG	1 cut(s)	83
MspA1I	CMGCKG	1 cut(s)	284
MspI	CCGG	1 cut(s)	67
MspR9I	CCNGG	1 cut(s)	326
MvaI	CCWGG	1 cut(s)	326
MwoI	GCNNNNNNNGC	3 cut(s)	80, 230, 326
NcoI	CCATGG	1 cut(s)	78
NdeII	GATC	1 cut(s)	348
NheI	GCTAGC	1 cut(s)	229
NlaIII	CATG	2 cut(s)	18, 82
NlaIV	GGNNCC	1 cut(s)	292
NmuCI	GTSAC	1 cut(s)	176
PfeI	GAWTC	1 cut(s)	103
PkrI	GCNGC	5 cut(s)	76, 235, 238, 283, 368
PleI	GAGTC	2 cut(s)	69, 164
PpsI	GAGTC	2 cut(s)	69, 164
PpuMI	RGGWCCY	1 cut(s)	128
Psp5II	RGGWCCY	1 cut(s)	128
Psp6I	CCWGG	1 cut(s)	324
PspGI	CCWGG	1 cut(s)	324
PspN4I	GGNNCC	1 cut(s)	292
PspPI	GGNCC	1 cut(s)	128
PspPPI	RGGWCCY	1 cut(s)	128
PvuII	CAGCTG	1 cut(s)	284
RsaI	GTAC	1 cut(s)	110
RsaNI	GTAC	1 cut(s)	109
RseI	CAYNNNNRTG	1 cut(s)	83
SatI	GCNGC	5 cut(s)	75, 234, 237, 282, 367
Sau3AI	GATC	1 cut(s)	348
Sau96I	GGNCC	1 cut(s)	128
SchI	GAGTC	2 cut(s)	70, 165
ScrFI	CCNGG	1 cut(s)	326
SfaNI	GCATC	1 cut(s)	331
SfcI	CTRYAG	1 cut(s)	202
SinI	GGWCC	1 cut(s)	128
SmiMI	CAYNNNNRTG	1 cut(s)	83
Sse9I	AATT	2 cut(s)	29, 248
SsiI	CCGC	3 cut(s)	123, 234, 366
SspMI	CTAG	4 cut(s)	221, 230, 261, 370
StyD4I	CCNGG	1 cut(s)	324
StyI	CCWWGG	1 cut(s)	78
TasI	AATT	2 cut(s)	29, 248
TatI	WGTACW	1 cut(s)	108
TauI	GCSGC	2 cut(s)	236, 369
TfiI	GAWTC	1 cut(s)	103
TscAI	CASTG	1 cut(s)	90
TseFI	GTSAC	1 cut(s)	176
TseI	GCWGC	3 cut(s)	74, 236, 281
Tsp45I	GTSAC	1 cut(s)	176
TspRI	CASTG	1 cut(s)	90
VpaK11BI	GGWCC	1 cut(s)	128
XapI	RAATTY	1 cut(s)	29
XspI	CTAG	4 cut(s)	221, 230, 261, 370

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.