Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0000313

Physical Location & Seq

Genomic Coordinates Forward (+)

48999963 .. 49002363

Gene Structure 2401 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG271000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGGCAGCCATGGCGGCCAAACTTATGCATGCGGTTCAGTACGACGCTTATGGTGGAGGACCTTCTGGTTTAAAGAATGGAGGTGGATTTGCTGAGTTTGCAACTGCTAGTGAGAATTTGACGGTTACTAGGCCGCCTGAAGTTTCAGCAGCCGAAGCTGCAGGATTACCTGTTGCTGGTCTCACAGCTCACCAGTGTCTCACCCAAGCTGCAGGAGTCAAGCTTGACGGCACTGGCCCACAGAAGAACATATTGGTTACTGCTGCCTCCGGTGGTGTGGGTCAGTATGCAGTCCAACTTGCAAAGCTGGGAAACACCCACGTCACAGCTACATGTGGAGCTCGTAACATTGATTTCGTCAAGAGCTTAGGGGCCGATGAGGTTCTTGACTACAAGACCCCTGAAGGGGCAGCTCTGAAGAGCTCATCTGGTCGCAAATATGATGCTGTAATCCACTGTGCGACGGGCATTCCTTGGTGCACTTTTGAGCCGAATTTGAGTCCAAATGGGAAGGTTATAGACATTACTCCTGGTCCAAGTGCTTTGTTTACTTTCGCTCTAAAGAATCTCACCTTTTCCAAGAAGAAGCTAGTGCCGCTGCTCATGAATGCCAAGGCGGAGAATCTGGATTATCTTGTGAAGTTGGTGAAGGAAGGAAAGCTGAAGACAGTGATCGACACAAAGTATCCTCTGAGCAAGGCTGAAGATGCTTGGGCTAAGAGTATTGATGGCCATGCTACTGGGAAGATCATTGTGGAGCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N_2

Protein Analysis

254

Amino Acids

26.4

Weight (kDa)

8.75

Isoelectric Point (pI)

25.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_zinc_N	PF00107	92 - 214	1.4e-10	Zinc-binding dehydrogenase
ADH_zinc_N_2	PF13602	123 - 252	2.1e-22	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13010
fragaria_vesca	FvH4_2g18240 FvH4_2g18280 FvH4_2g18310 FvH4_2g18320 FvH4_2g18330 FvH4_2g18340 FvH4_2g18350
malus_domestica	MD05G1166800.v1.1 MD05G1167200.v1.1 MD05G1167300.v1.1 MD05G1167400.v1.1 MD05G1167600.v1.1 MD05G1168000.v1.1 MD05G1168200.v1.1 MD05G1168400.v1.1 MD05G1168600.v1.1 MD05G1168700.v1.1 MD05G1168800.v1.1 MD10G1156900.v1.1 MD10G1157000.v1.1 MD10G1157100.v1.1 MD10G1157200.v1.1
prunus_persica	Prupe.8G195100_v2.0.a1 Prupe.8G195100_v2.0.a1 Prupe.8G195300_v2.0.a1 Prupe.8G195600_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G196000_v2.0.a1 Prupe.8G196000_v2.0.a1
pyrus_communis	pycom05g15560 pycom05g15600 pycom05g15610 pycom05g15620 pycom05g15630 pycom10g13550 pycom10g13570
rosa_chinensis	RchiOBHm_Chr6g0283611 RchiOBHm_Chr6g0283631 RchiOBHm_Chr6g0283641 RchiOBHm_Chr6g0283661 RchiOBHm_Chr6g0283681 RchiOBHm_Chr6g0283691 RchiOBHm_Chr6g0283701 RchiOBHm_Chr6g0283711 RchiOBHm_Chr6g0283721
rosa_laevigata	RLG00000012804 RLG00000012807 RLG00000012811
rosa_multiflora	Rmu_co8263921.1_g000001 Rmu_sc0001521.1_g000009 Rmu_sc0002906.1_g000002 Rmu_sc0002906.1_g000011 Rmu_sc0002906.1_g000013 Rmu_sc0005719.1_g000016 Rmu_sc0005719.1_g000022 Rmu_sc0029460.1_g000001
rosa_roxburghii	Rroxscaffold_7G00185240 Rroxscaffold_7G00185250 Rroxscaffold_7G00185270 Rroxscaffold_7G00185280 Rroxscaffold_7G00185290 Rroxscaffold_7G00185330 Rroxscaffold_7G00185350
rosa_rugosa	Rorug06G0156100 Rorug06G0156300 Rorug06G0156400 Rorug06G0156500 Rorug06G0156600 Rorug06G0156700 Rorug06G0156800 Rorug06G0156900 Rorug06G0157000
rosa_samantha	Rh6AG267900 Rh6AG268100 Rh6AG268200 Rh6AG268400 Rh6AG268600 Rh6AG268700 Rh6AG268900 Rh6AG269100 Rh6BG270700 Rh6BG270900 Rh6BG271000 Rh6BG271200 Rh6BG271400 Rh6BG271500 Rh6CG270200 Rh6CG270400 Rh6CG270500 Rh6CG270800 Rh6CG270900 Rh6CG271000 Rh6CG271100 Rh6CG271300 Rh6DG263900 Rh6DG264100 Rh6DG264200 Rh6DG264400 Rh6DG264600 Rh6DG264800 Rh6DG265200
rosa_wichuraiana	Rw6G023210 Rw6G023220 Rw6G023230 Rw6G023240 Rw6G023250 Rw6G023260 Rw6G023270 Rw6G023280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	14, 32, 134, 596, 617
AcoI	YGGCCR	2 cut(s)	15, 730
AcsI	RAATTY	2 cut(s)	115, 493
AcuI	CTGAAG	5 cut(s)	159, 423, 437, 683, 723
AfaI	GTAC	1 cut(s)	41
AfiI	CCNNNNNNNGG	3 cut(s)	176, 405, 406
AflIII	ACRYGT	1 cut(s)	332
AjiI	CACGTC	1 cut(s)	322
AjnI	CCWGG	1 cut(s)	529
AjuI	GAANNNNNNNTTGG	2 cut(s)	236, 268
Alw21I	GWGCWC	3 cut(s)	343, 425, 482
Alw26I	GTCTC	2 cut(s)	185, 203
Alw44I	GTGCAC	1 cut(s)	478
AoxI	GGCC	5 cut(s)	15, 131, 235, 372, 730
ApaLI	GTGCAC	1 cut(s)	478
ApeKI	GCWGC	7 cut(s)	5, 149, 158, 209, 263, 410, 598
ApoI	RAATTY	2 cut(s)	115, 493
AspS9I	GGNCC	4 cut(s)	59, 236, 372, 533
AsuHPI	GGTGA	4 cut(s)	182, 193, 562, 658
AvaII	GGWCC	2 cut(s)	59, 533
BaeGI	GKGCMC	1 cut(s)	482
BalI	TGGCCA	1 cut(s)	732
BanII	GRGCYC	2 cut(s)	343, 425
BbsI	GAAGAC	1 cut(s)	671
Bbv12I	GWGCWC	3 cut(s)	343, 425, 482
BbvI	GCAGC	7 cut(s)	17, 145, 161, 196, 250, 422, 585
BccI	CCATC	1 cut(s)	722
BceAI	ACGGC	1 cut(s)	244
BciT130I	CCWGG	1 cut(s)	531
BciVI	GTATCC	1 cut(s)	696
BcoDI	GTCTC	2 cut(s)	185, 203
BfaI	CTAG	3 cut(s)	108, 129, 590
BfmI	CTRYAG	2 cut(s)	159, 210
BfuI	GTATCC	1 cut(s)	696
BglI	GCCNNNNNGGC	1 cut(s)	14
Bme1390I	CCNGG	1 cut(s)	531
Bme18I	GGWCC	2 cut(s)	59, 533
BmgBI	CACGTC	1 cut(s)	322
BmgT120I	GGNCC	4 cut(s)	59, 236, 372, 533
BmiI	GGNNCC	2 cut(s)	373, 759
BmrFI	CCNGG	1 cut(s)	531
BmrI	ACTGGG	1 cut(s)	750
BmsI	GCATC	2 cut(s)	433, 697
BmuI	ACTGGG	1 cut(s)	750
BpiI	GAAGAC	1 cut(s)	671
Bpu10I	CCTNAGC	1 cut(s)	367
BsaI	GGTCTC	1 cut(s)	185
BsaJI	CCNNGG	3 cut(s)	9, 473, 612
BsaWI	WCCGGW	1 cut(s)	269
Bsc4I	CCNNNNNNNGG	3 cut(s)	176, 405, 406
Bse1I	ACTGG	3 cut(s)	193, 238, 745
BseBI	CCWGG	1 cut(s)	531
BseDI	CCNNGG	3 cut(s)	9, 473, 612
BseLI	CCNNNNNNNGG	3 cut(s)	176, 405, 406
BseMII	CTCAG	2 cut(s)	84, 683
BseNI	ACTGG	3 cut(s)	193, 238, 745
BseSI	GKGCMC	1 cut(s)	482
BseXI	GCAGC	7 cut(s)	17, 145, 161, 196, 250, 422, 585
BseYI	CCCAGC	1 cut(s)	307
BshFI	GGCC	5 cut(s)	17, 133, 237, 374, 732
BsiHKAI	GWGCWC	3 cut(s)	343, 425, 482
BsiSI	CCGG	1 cut(s)	270
BslI	CCNNNNNNNGG	3 cut(s)	176, 405, 406
BsmAI	GTCTC	2 cut(s)	185, 203
BsmI	GAATGC	2 cut(s)	468, 613
BsnI	GGCC	5 cut(s)	17, 133, 237, 374, 732
Bso31I	GGTCTC	1 cut(s)	185
Bsp1286I	GDGCHC	3 cut(s)	343, 425, 482
Bsp143I	GATC	2 cut(s)	672, 747
Bsp19I	CCATGG	1 cut(s)	9
BspACI	CCGC	5 cut(s)	14, 32, 134, 596, 617
BspANI	GGCC	5 cut(s)	17, 133, 237, 374, 732
BspCNI	CTCAG	2 cut(s)	85, 684
BspHI	TCATGA	1 cut(s)	603
BspLI	GGNNCC	2 cut(s)	373, 759
BspMAI	CTGCAG	2 cut(s)	163, 214
BspQI	GCTCTTC	1 cut(s)	413
BspTNI	GGTCTC	1 cut(s)	185
BsrI	ACTGG	3 cut(s)	193, 238, 745
BssECI	CCNNGG	3 cut(s)	9, 473, 612
BssMI	GATC	2 cut(s)	672, 747
BssT1I	CCWWGG	3 cut(s)	9, 473, 612
Bst2UI	CCWGG	1 cut(s)	531
Bst4CI	ACNGT	3 cut(s)	124, 458, 670
Bst6I	CTCTTC	1 cut(s)	413
BstC8I	GCNNGC	1 cut(s)	30
BstDEI	CTNAG	4 cut(s)	93, 367, 692, 717
BstDSI	CCRYGG	1 cut(s)	9
BstKTI	GATC	2 cut(s)	675, 750
BstMAI	GTCTC	2 cut(s)	185, 203
BstMBI	GATC	2 cut(s)	672, 747
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 14, 98, 155, 158, 595, 707
BstNI	CCWGG	1 cut(s)	531
BstNSI	RCATGY	2 cut(s)	32, 336
BstSCI	CCNGG	1 cut(s)	529
BstSFI	CTRYAG	2 cut(s)	159, 210
BstSLI	GKGCMC	1 cut(s)	482
BstV1I	GCAGC	7 cut(s)	17, 145, 161, 196, 250, 422, 585
BstV2I	GAAGAC	1 cut(s)	671
BstXI	CCANNNNNNTGG	1 cut(s)	740
BsuI	GTATCC	1 cut(s)	696
BsuRI	GGCC	5 cut(s)	17, 133, 237, 374, 732
BtgI	CCRYGG	1 cut(s)	9
BtrI	CACGTC	1 cut(s)	322
BtsIMutI	CAGTG	4 cut(s)	200, 231, 454, 675
Cac8I	GCNNGC	1 cut(s)	30
CciI	TCATGA	1 cut(s)	603
Cfr13I	GGNCC	4 cut(s)	59, 236, 372, 533
CseI	GACGC	1 cut(s)	53
Csp6I	GTAC	1 cut(s)	40
CviAII	CATG	5 cut(s)	10, 29, 333, 604, 734
CviQI	GTAC	1 cut(s)	40
DdeI	CTNAG	4 cut(s)	93, 367, 692, 717
DpnI	GATC	2 cut(s)	674, 749
DpnII	GATC	2 cut(s)	672, 747
DraI	TTTAAA	1 cut(s)	72
EaeI	YGGCCR	2 cut(s)	15, 730
Eam1104I	CTCTTC	1 cut(s)	413
EarI	CTCTTC	1 cut(s)	413
EciI	GGCGGA	1 cut(s)	632
Ecl136II	GAGCTC	2 cut(s)	341, 423
Eco130I	CCWWGG	3 cut(s)	9, 473, 612
Eco24I	GRGCYC	2 cut(s)	343, 425
Eco31I	GGTCTC	1 cut(s)	185
Eco47I	GGWCC	2 cut(s)	59, 533
Eco53kI	GAGCTC	2 cut(s)	341, 423
Eco57I	CTGAAG	5 cut(s)	159, 423, 437, 683, 723
EcoICRI	GAGCTC	2 cut(s)	341, 423
EcoO109I	RGGNCCY	1 cut(s)	59
EcoRII	CCWGG	1 cut(s)	529
EcoT14I	CCWWGG	3 cut(s)	9, 473, 612
EcoT22I	ATGCAT	1 cut(s)	30
EcoT38I	GRGCYC	2 cut(s)	343, 425
ErhI	CCWWGG	3 cut(s)	9, 473, 612
FaeI	CATG	5 cut(s)	13, 32, 336, 607, 737
FatI	CATG	5 cut(s)	9, 28, 332, 603, 733
FriOI	GRGCYC	2 cut(s)	343, 425
FspBI	CTAG	3 cut(s)	108, 129, 590
GsaI	CCCAGC	1 cut(s)	311
HaeIII	GGCC	5 cut(s)	17, 133, 237, 374, 732
HapII	CCGG	1 cut(s)	270
HgaI	GACGC	1 cut(s)	53
Hin1II	CATG	5 cut(s)	13, 32, 336, 607, 737
HindIII	AAGCTT	1 cut(s)	221
HinfI	GANTC	4 cut(s)	216, 499, 565, 622
HpaII	CCGG	1 cut(s)	270
HphI	GGTGA	4 cut(s)	182, 193, 562, 658
Hpy166II	GTNNAC	2 cut(s)	480, 549
Hpy188I	TCNGA	2 cut(s)	417, 693
Hpy188III	TCNNGA	4 cut(s)	361, 386, 604, 626
Hpy8I	GTNNAC	2 cut(s)	480, 549
Hpy99I	CGWCG	2 cut(s)	47, 466
HpyAV	CCTTC	5 cut(s)	72, 398, 505, 643, 647
HpyCH4III	ACNGT	3 cut(s)	124, 458, 670
HpyCH4IV	ACGT	1 cut(s)	321
HpyCH4V	TGCA	7 cut(s)	28, 101, 161, 212, 290, 302, 480
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 14, 98, 155, 158, 595, 707
HpyF3I	CTNAG	4 cut(s)	93, 367, 692, 717
HpySE526I	ACGT	1 cut(s)	321
Hsp92II	CATG	5 cut(s)	13, 32, 336, 607, 737
Kzo9I	GATC	2 cut(s)	672, 747
LguI	GCTCTTC	1 cut(s)	413
LmnI	GCTCC	2 cut(s)	338, 757
Lsp1109I	GCAGC	7 cut(s)	17, 145, 161, 196, 250, 422, 585
LweI	GCATC	2 cut(s)	433, 697
MaeI	CTAG	3 cut(s)	108, 129, 590
MaeII	ACGT	1 cut(s)	321
MaeIII	GTNAC	4 cut(s)	124, 256, 322, 344
MalI	GATC	2 cut(s)	674, 749
MboI	GATC	2 cut(s)	672, 747
MboII	GAAGA	6 cut(s)	256, 430, 595, 676, 716, 757
MhlI	GDGCHC	3 cut(s)	343, 425, 482
MlsI	TGGCCA	1 cut(s)	732
MluCI	AATT	2 cut(s)	115, 493
MluNI	TGGCCA	1 cut(s)	732
MlyI	GAGTC	2 cut(s)	225, 508
MmeI	TCCRAC	1 cut(s)	319
MnlI	CCTC	5 cut(s)	50, 74, 277, 373, 699
Mox20I	TGGCCA	1 cut(s)	732
Mph1103I	ATGCAT	1 cut(s)	30
MscI	TGGCCA	1 cut(s)	732
MseI	TTAA	2 cut(s)	71, 763
Msp20I	TGGCCA	1 cut(s)	732
MspA1I	CMGCKG	1 cut(s)	598
MspI	CCGG	1 cut(s)	270
MspR9I	CCNGG	1 cut(s)	531
Mva1269I	GAATGC	2 cut(s)	468, 613
MvaI	CCWGG	1 cut(s)	531
MwoI	GCNNNNNNNGC	7 cut(s)	11, 14, 98, 155, 158, 595, 707
NcoI	CCATGG	1 cut(s)	9
NdeII	GATC	2 cut(s)	672, 747
NlaIII	CATG	5 cut(s)	13, 32, 336, 607, 737
NlaIV	GGNNCC	2 cut(s)	373, 759
NmuCI	GTSAC	1 cut(s)	322
NsiI	ATGCAT	1 cut(s)	30
NspI	RCATGY	2 cut(s)	32, 336
PaeI	GCATGC	1 cut(s)	32
PagI	TCATGA	1 cut(s)	603
PciI	ACATGT	1 cut(s)	332
PciSI	GCTCTTC	1 cut(s)	413
PctI	GAATGC	2 cut(s)	468, 613
PfeI	GAWTC	2 cut(s)	565, 622
PleI	GAGTC	2 cut(s)	224, 507
PpsI	GAGTC	2 cut(s)	224, 507
PpuMI	RGGWCCY	1 cut(s)	59
PscI	ACATGT	1 cut(s)	332
Psp124BI	GAGCTC	2 cut(s)	343, 425
Psp5II	RGGWCCY	1 cut(s)	59
Psp6I	CCWGG	1 cut(s)	529
PspFI	CCCAGC	1 cut(s)	307
PspGI	CCWGG	1 cut(s)	529
PspN4I	GGNNCC	2 cut(s)	373, 759
PspPI	GGNCC	4 cut(s)	59, 236, 372, 533
PspPPI	RGGWCCY	1 cut(s)	59
PstI	CTGCAG	2 cut(s)	163, 214
RsaI	GTAC	1 cut(s)	41
RsaNI	GTAC	1 cut(s)	40
SacI	GAGCTC	2 cut(s)	343, 425
SapI	GCTCTTC	1 cut(s)	413
SaqAI	TTAA	2 cut(s)	71, 763
Sau3AI	GATC	2 cut(s)	672, 747
Sau96I	GGNCC	4 cut(s)	59, 236, 372, 533
SchI	GAGTC	2 cut(s)	225, 508
ScrFI	CCNGG	1 cut(s)	531
SduI	GDGCHC	3 cut(s)	343, 425, 482
SfaNI	GCATC	2 cut(s)	433, 697
SfcI	CTRYAG	2 cut(s)	159, 210
SinI	GGWCC	2 cut(s)	59, 533
SphI	GCATGC	1 cut(s)	32
Sse9I	AATT	2 cut(s)	115, 493
SsiI	CCGC	5 cut(s)	14, 32, 134, 596, 617
SspMI	CTAG	3 cut(s)	108, 129, 590
SstI	GAGCTC	2 cut(s)	343, 425
StyD4I	CCNGG	1 cut(s)	529
StyI	CCWWGG	3 cut(s)	9, 473, 612
TaaI	ACNGT	3 cut(s)	124, 458, 670
TaiI	ACGT	1 cut(s)	324
TaqI	TCGA	1 cut(s)	675
TasI	AATT	2 cut(s)	115, 493
TauI	GCSGC	3 cut(s)	17, 136, 598
TfiI	GAWTC	2 cut(s)	565, 622
Tru1I	TTAA	2 cut(s)	71, 763
Tru9I	TTAA	2 cut(s)	71, 763
TscAI	CASTG	4 cut(s)	200, 238, 461, 675
TseFI	GTSAC	1 cut(s)	322
TseI	GCWGC	7 cut(s)	5, 149, 158, 209, 263, 410, 598
Tsp45I	GTSAC	1 cut(s)	322
TspDTI	ATGAA	1 cut(s)	620
TspRI	CASTG	4 cut(s)	200, 238, 461, 675
VneI	GTGCAC	1 cut(s)	478
VpaK11BI	GGWCC	2 cut(s)	59, 533
XapI	RAATTY	2 cut(s)	115, 493
XceI	RCATGY	2 cut(s)	32, 336
XspI	CTAG	3 cut(s)	108, 129, 590
Zsp2I	ATGCAT	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.