Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0000313

Physical Location & Seq

Genomic Coordinates Forward (+)

18782896 .. 18785596

Gene Structure 2701 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G195900.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGACATTGGCAGCCATGGCGACAAAGCTTATGCGTGCGGTTCAGTACAACAGCTATGGTGGAGGAGCTTCTGGTTTAAAGCATGTAGAGGTTCCAGTGCCCACTCCAAAGAAAGGTGAGATCTTGCTGAAATTGGAAGCAGCTACTATGAACCCGGTTGATTGGAGAATTCAGAAAGGCAAGATGCGGCCTTTTTTTCCACCCAAATTCCCTCATATACCTGCTACTGATGTTGCTGGAGAGGTTGTAGAAGTTGGAAAAGGGGTCCAAAAGTTCAAACCGGGCGACAAAGTTGTGGCATATCTCACCCTCGCTAATGGAGGTGGACTGGCTGAGTTTGTCACAGCTAGTGAGAGCTTGACAGTTGCCAGGCCACCTGAAGTTTCAGCAGCTCAAGGTGCAGGCTTACCTATTGCTGGTCTCACAGCTCTCCAGGCTCTCACCCAAGCTGCAGGGCTTAATCTCGACGGAAGTGGCCAGAAAAAGAACATCTTGATTACTGCTGCCTCTGGTGGTGTGGGTCAGTATGCAGTCCAACTAGCAAAGCTCGGAAACACTCATGTTACAGCCACATGCGGTGCTCGTAACATCGAATTTATCAAGAGCTTGGGGGCAGATGAGGTTCTTGACTACAAGACCCCAGAAGGAGCAGCTCTGATTAGCCCATCTGGTAGGAAATATGACATCGCTGTCCATTGTGCAATAACGGGCATTCCCTGGTCAACTTTCAAGCCTAATTTGAGCGCCAACGGGAAGGTTATAAACATTACTCCTGGTCCAAGTACCTGGGCTGCTATTGCTCAGAACACACTCACCTTCTCCAAGAAGCAGCTGGTGCCACTGCTCTTGTGGGCTAAGAGTGAGAACCTTGATTATCTTGTCAAGTTAGTCAAGGAAGGAAAGCTCAAGACAGTGATCGACTCTAAGCACCCTCTAAGCAAGGCTGAAGATGCTTGGGCTAAGAGTATTGATGGACATGCAACTGGGAAGATAATCGTGGAGCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N_2

Protein Analysis

336

Amino Acids

35.2

Weight (kDa)

9.46

Isoelectric Point (pI)

24.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13010
fragaria_vesca	FvH4_2g18240 FvH4_2g18280 FvH4_2g18310 FvH4_2g18320 FvH4_2g18330 FvH4_2g18340 FvH4_2g18350
malus_domestica	MD05G1166800.v1.1 MD05G1167200.v1.1 MD05G1167300.v1.1 MD05G1167400.v1.1 MD05G1167600.v1.1 MD05G1168000.v1.1 MD05G1168200.v1.1 MD05G1168400.v1.1 MD05G1168600.v1.1 MD05G1168700.v1.1 MD05G1168800.v1.1 MD10G1156900.v1.1 MD10G1157000.v1.1 MD10G1157100.v1.1 MD10G1157200.v1.1
prunus_persica	Prupe.8G195100_v2.0.a1 Prupe.8G195100_v2.0.a1 Prupe.8G195300_v2.0.a1 Prupe.8G195600_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G196000_v2.0.a1 Prupe.8G196000_v2.0.a1
pyrus_communis	pycom05g15560 pycom05g15600 pycom05g15610 pycom05g15620 pycom05g15630 pycom10g13550 pycom10g13570
rosa_chinensis	RchiOBHm_Chr6g0283611 RchiOBHm_Chr6g0283631 RchiOBHm_Chr6g0283641 RchiOBHm_Chr6g0283661 RchiOBHm_Chr6g0283681 RchiOBHm_Chr6g0283691 RchiOBHm_Chr6g0283701 RchiOBHm_Chr6g0283711 RchiOBHm_Chr6g0283721
rosa_laevigata	RLG00000012804 RLG00000012807 RLG00000012811
rosa_multiflora	Rmu_co8263921.1_g000001 Rmu_sc0001521.1_g000009 Rmu_sc0002906.1_g000002 Rmu_sc0002906.1_g000011 Rmu_sc0002906.1_g000013 Rmu_sc0005719.1_g000016 Rmu_sc0005719.1_g000022 Rmu_sc0029460.1_g000001
rosa_roxburghii	Rroxscaffold_7G00185240 Rroxscaffold_7G00185250 Rroxscaffold_7G00185270 Rroxscaffold_7G00185280 Rroxscaffold_7G00185290 Rroxscaffold_7G00185330 Rroxscaffold_7G00185350
rosa_rugosa	Rorug06G0156100 Rorug06G0156300 Rorug06G0156400 Rorug06G0156500 Rorug06G0156600 Rorug06G0156700 Rorug06G0156800 Rorug06G0156900 Rorug06G0157000
rosa_samantha	Rh6AG267900 Rh6AG268100 Rh6AG268200 Rh6AG268400 Rh6AG268600 Rh6AG268700 Rh6AG268900 Rh6AG269100 Rh6BG270700 Rh6BG270900 Rh6BG271000 Rh6BG271200 Rh6BG271400 Rh6BG271500 Rh6CG270200 Rh6CG270400 Rh6CG270500 Rh6CG270800 Rh6CG270900 Rh6CG271000 Rh6CG271100 Rh6CG271300 Rh6DG263900 Rh6DG264100 Rh6DG264200 Rh6DG264400 Rh6DG264600 Rh6DG264800 Rh6DG265200
rosa_wichuraiana	Rw6G023210 Rw6G023220 Rw6G023230 Rw6G023240 Rw6G023250 Rw6G023260 Rw6G023270 Rw6G023280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	761
AasI	GACNNNNNNGTC	1 cut(s)	689
Acc36I	ACCTGC	1 cut(s)	229
AccB1I	GGYRCC	1 cut(s)	835
AciI	CCGC	3 cut(s)	38, 187, 576
AcoI	YGGCCR	1 cut(s)	475
AcsI	RAATTY	3 cut(s)	168, 206, 593
AcuI	CTGAAG	2 cut(s)	399, 966
AfaI	GTAC	2 cut(s)	47, 784
AfiI	CCNNNNNNNGG	2 cut(s)	113, 416
AgsI	TTSAA	2 cut(s)	277, 730
AjnI	CCWGG	5 cut(s)	368, 432, 716, 772, 785
Alw21I	GWGCWC	1 cut(s)	583
Alw26I	GTCTC	1 cut(s)	425
AoxI	GGCC	3 cut(s)	188, 371, 475
ApeKI	GCWGC	8 cut(s)	11, 140, 389, 449, 503, 650, 791, 829
ApoI	RAATTY	3 cut(s)	168, 206, 593
AspLEI	GCGC	1 cut(s)	746
AspS9I	GGNCC	2 cut(s)	265, 776
AsuC2I	CCSGG	2 cut(s)	155, 282
AsuHPI	GGTGA	4 cut(s)	128, 298, 433, 805
AvaII	GGWCC	2 cut(s)	265, 776
BaeGI	GKGCMC	1 cut(s)	102
BalI	TGGCCA	1 cut(s)	477
BanI	GGYRCC	1 cut(s)	835
Bbv12I	GWGCWC	1 cut(s)	583
BbvI	GCAGC	8 cut(s)	23, 152, 401, 436, 490, 662, 778, 841
BccI	CCATC	2 cut(s)	673, 965
BciT130I	CCWGG	5 cut(s)	370, 434, 718, 774, 787
BcnI	CCSGG	2 cut(s)	155, 282
BcoDI	GTCTC	1 cut(s)	425
BfaI	CTAG	2 cut(s)	348, 539
BfmI	CTRYAG	1 cut(s)	450
BfoI	RGCGCY	1 cut(s)	747
BfuAI	ACCTGC	1 cut(s)	229
BglII	AGATCT	1 cut(s)	120
BisI	GCNGC	9 cut(s)	12, 141, 188, 390, 450, 504, 651, 792, 830
BlsI	GCNGC	9 cut(s)	13, 142, 189, 391, 451, 505, 652, 793, 831
Bme1390I	CCNGG	7 cut(s)	155, 282, 370, 434, 718, 774, 787
Bme18I	GGWCC	2 cut(s)	265, 776
BmgT120I	GGNCC	2 cut(s)	265, 776
BmiI	GGNNCC	4 cut(s)	93, 266, 837, 1002
BmrFI	CCNGG	7 cut(s)	155, 282, 370, 434, 718, 774, 787
BmrI	ACTGGG	1 cut(s)	993
BmsI	GCATC	2 cut(s)	174, 940
BmuI	ACTGGG	1 cut(s)	993
BpmI	CTGGAG	2 cut(s)	258, 416
BpuEI	CTTGAG	2 cut(s)	378, 890
BpuMI	CCSGG	2 cut(s)	155, 282
BsaI	GGTCTC	1 cut(s)	425
BsaJI	CCNNGG	3 cut(s)	15, 716, 786
BsaXI	ACNNNNNCTCC	2 cut(s)	231, 261
Bsc4I	CCNNNNNNNGG	2 cut(s)	113, 416
Bse1I	ACTGG	3 cut(s)	95, 333, 988
BseBI	CCWGG	5 cut(s)	370, 434, 718, 774, 787
BseDI	CCNNGG	3 cut(s)	15, 716, 786
BseLI	CCNNNNNNNGG	2 cut(s)	113, 416
BseMII	CTCAG	2 cut(s)	324, 815
BseNI	ACTGG	3 cut(s)	95, 333, 988
BseRI	GAGGAG	1 cut(s)	78
BseSI	GKGCMC	1 cut(s)	102
BseXI	GCAGC	8 cut(s)	23, 152, 401, 436, 490, 662, 778, 841
BsgI	GTGCAG	1 cut(s)	420
BshFI	GGCC	3 cut(s)	190, 373, 477
BshNI	GGYRCC	1 cut(s)	835
BsiHKAI	GWGCWC	1 cut(s)	583
BsiSI	CCGG	2 cut(s)	155, 281
BslI	CCNNNNNNNGG	2 cut(s)	113, 416
BsmAI	GTCTC	1 cut(s)	425
BsmI	GAATGC	1 cut(s)	711
BsnI	GGCC	3 cut(s)	190, 373, 477
Bso31I	GGTCTC	1 cut(s)	425
Bsp1286I	GDGCHC	2 cut(s)	102, 583
Bsp143I	GATC	2 cut(s)	120, 915
Bsp19I	CCATGG	1 cut(s)	15
BspACI	CCGC	3 cut(s)	38, 187, 576
BspANI	GGCC	3 cut(s)	190, 373, 477
BspCNI	CTCAG	2 cut(s)	325, 814
BspLI	GGNNCC	4 cut(s)	93, 266, 837, 1002
BspMAI	CTGCAG	1 cut(s)	454
BspMI	ACCTGC	1 cut(s)	229
BspT107I	GGYRCC	1 cut(s)	835
BspTNI	GGTCTC	1 cut(s)	425
BsrI	ACTGG	3 cut(s)	95, 333, 988
BssECI	CCNNGG	3 cut(s)	15, 716, 786
BssMI	GATC	2 cut(s)	120, 915
BssT1I	CCWWGG	1 cut(s)	15
Bst2UI	CCWGG	5 cut(s)	370, 434, 718, 774, 787
Bst4CI	ACNGT	2 cut(s)	364, 913
BstAPI	GCANNNNNTGC	1 cut(s)	835
BstC8I	GCNNGC	2 cut(s)	36, 403
BstDEI	CTNAG	6 cut(s)	333, 801, 855, 924, 935, 960
BstDSI	CCRYGG	1 cut(s)	15
BstH2I	RGCGCY	1 cut(s)	747
BstHHI	GCGC	1 cut(s)	746
BstKTI	GATC	2 cut(s)	123, 918
BstMAI	GTCTC	1 cut(s)	425
BstMBI	GATC	2 cut(s)	120, 915
BstMWI	GCNNNNNNNGC	6 cut(s)	17, 398, 434, 797, 835, 950
BstNI	CCWGG	5 cut(s)	370, 434, 718, 774, 787
BstNSI	RCATGY	3 cut(s)	86, 576, 980
BstSCI	CCNGG	7 cut(s)	153, 280, 368, 432, 716, 772, 785
BstSFI	CTRYAG	1 cut(s)	450
BstSLI	GKGCMC	1 cut(s)	102
BstV1I	GCAGC	8 cut(s)	23, 152, 401, 436, 490, 662, 778, 841
BstX2I	RGATCY	1 cut(s)	120
BstXI	CCANNNNNNTGG	1 cut(s)	786
BstYI	RGATCY	1 cut(s)	120
BsuRI	GGCC	3 cut(s)	190, 373, 477
BtgI	CCRYGG	1 cut(s)	15
BtgZI	GCGATG	1 cut(s)	670
BtsI	GCAGTG	1 cut(s)	839
BtsIMutI	CAGTG	3 cut(s)	102, 839, 918
BveI	ACCTGC	1 cut(s)	229
Cac8I	GCNNGC	2 cut(s)	36, 403
CfoI	GCGC	1 cut(s)	746
Cfr13I	GGNCC	2 cut(s)	265, 776
Csp6I	GTAC	2 cut(s)	46, 783
CspCI	CAANNNNNGTGG	2 cut(s)	828, 863
CviAII	CATG	5 cut(s)	16, 83, 560, 573, 977
CviQI	GTAC	2 cut(s)	46, 783
DdeI	CTNAG	6 cut(s)	333, 801, 855, 924, 935, 960
DpnI	GATC	2 cut(s)	122, 917
DpnII	GATC	2 cut(s)	120, 915
DraI	TTTAAA	1 cut(s)	78
DrdI	GACNNNNNNGTC	1 cut(s)	689
DseDI	GACNNNNNNGTC	1 cut(s)	689
EaeI	YGGCCR	1 cut(s)	475
Eco130I	CCWWGG	1 cut(s)	15
Eco31I	GGTCTC	1 cut(s)	425
Eco47I	GGWCC	2 cut(s)	265, 776
Eco57I	CTGAAG	2 cut(s)	399, 966
EcoRI	GAATTC	1 cut(s)	168
EcoRII	CCWGG	5 cut(s)	368, 432, 716, 772, 785
EcoT14I	CCWWGG	1 cut(s)	15
ErhI	CCWWGG	1 cut(s)	15
FaeI	CATG	5 cut(s)	19, 86, 563, 576, 980
FalI	AAGNNNNNCTT	2 cut(s)	476, 508
FatI	CATG	5 cut(s)	15, 82, 559, 572, 976
Fnu4HI	GCNGC	9 cut(s)	12, 141, 188, 390, 450, 504, 651, 792, 830
Fsp4HI	GCNGC	9 cut(s)	12, 141, 188, 390, 450, 504, 651, 792, 830
FspBI	CTAG	2 cut(s)	348, 539
GlaI	GCGC	1 cut(s)	745
GluI	GCNGC	9 cut(s)	12, 141, 188, 390, 450, 504, 651, 792, 830
GsuI	CTGGAG	2 cut(s)	258, 416
HaeII	RGCGCY	1 cut(s)	747
HaeIII	GGCC	3 cut(s)	190, 373, 477
HapII	CCGG	2 cut(s)	155, 281
HhaI	GCGC	1 cut(s)	746
Hin1II	CATG	5 cut(s)	19, 86, 563, 576, 980
Hin6I	GCGC	1 cut(s)	744
HinP1I	GCGC	1 cut(s)	744
HincII	GTYRAC	1 cut(s)	723
HindII	GTYRAC	1 cut(s)	723
HindIII	AAGCTT	1 cut(s)	26
HinfI	GANTC	1 cut(s)	920
HpaII	CCGG	2 cut(s)	155, 281
HphI	GGTGA	4 cut(s)	128, 298, 433, 805
Hpy166II	GTNNAC	2 cut(s)	326, 723
Hpy188I	TCNGA	4 cut(s)	174, 551, 657, 804
Hpy188III	TCNNGA	5 cut(s)	464, 493, 601, 626, 907
Hpy8I	GTNNAC	2 cut(s)	326, 723
Hpy99I	CGWCG	1 cut(s)	470
HpyAV	CCTTC	4 cut(s)	638, 748, 826, 890
HpyCH4III	ACNGT	2 cut(s)	364, 913
HpyCH4V	TGCA	5 cut(s)	401, 452, 530, 701, 980
HpyF10VI	GCNNNNNNNGC	6 cut(s)	17, 398, 434, 797, 835, 950
HpyF3I	CTNAG	6 cut(s)	333, 801, 855, 924, 935, 960
Hsp92II	CATG	5 cut(s)	19, 86, 563, 576, 980
HspAI	GCGC	1 cut(s)	744
Kzo9I	GATC	2 cut(s)	120, 915
LmnI	GCTCC	3 cut(s)	65, 647, 1000
Lsp1109I	GCAGC	8 cut(s)	23, 152, 401, 436, 490, 662, 778, 841
LweI	GCATC	2 cut(s)	174, 940
MaeI	CTAG	2 cut(s)	348, 539
MaeIII	GTNAC	3 cut(s)	340, 562, 584
MalI	GATC	2 cut(s)	122, 917
MboI	GATC	2 cut(s)	120, 915
MboII	GAAGA	2 cut(s)	959, 1000
MflI	RGATCY	1 cut(s)	120
MhlI	GDGCHC	2 cut(s)	102, 583
MlsI	TGGCCA	1 cut(s)	477
MluCI	AATT	5 cut(s)	131, 168, 206, 593, 736
MluNI	TGGCCA	1 cut(s)	477
MlyI	GAGTC	1 cut(s)	914
MmeI	TCCRAC	2 cut(s)	235, 559
MnlI	CCTC	9 cut(s)	56, 82, 222, 235, 314, 320, 517, 613, 942
Mox20I	TGGCCA	1 cut(s)	477
MscI	TGGCCA	1 cut(s)	477
MseI	TTAA	3 cut(s)	77, 459, 1006
Msp20I	TGGCCA	1 cut(s)	477
MspA1I	CMGCKG	1 cut(s)	832
MspI	CCGG	2 cut(s)	155, 281
MspR9I	CCNGG	7 cut(s)	155, 282, 370, 434, 718, 774, 787
Mva1269I	GAATGC	1 cut(s)	711
MvaI	CCWGG	5 cut(s)	370, 434, 718, 774, 787
MwoI	GCNNNNNNNGC	6 cut(s)	17, 398, 434, 797, 835, 950
NciI	CCSGG	2 cut(s)	155, 282
NcoI	CCATGG	1 cut(s)	15
NdeII	GATC	2 cut(s)	120, 915
NlaIII	CATG	5 cut(s)	19, 86, 563, 576, 980
NlaIV	GGNNCC	4 cut(s)	93, 266, 837, 1002
NmuCI	GTSAC	1 cut(s)	340
NspI	RCATGY	3 cut(s)	86, 576, 980
PctI	GAATGC	1 cut(s)	711
PkrI	GCNGC	9 cut(s)	13, 142, 189, 391, 451, 505, 652, 793, 831
PleI	GAGTC	1 cut(s)	914
PpsI	GAGTC	1 cut(s)	914
PsiI	TTATAA	1 cut(s)	761
Psp6I	CCWGG	5 cut(s)	368, 432, 716, 772, 785
PspGI	CCWGG	5 cut(s)	368, 432, 716, 772, 785
PspN4I	GGNNCC	4 cut(s)	93, 266, 837, 1002
PspPI	GGNCC	2 cut(s)	265, 776
PstI	CTGCAG	1 cut(s)	454
PsuI	RGATCY	1 cut(s)	120
PvuII	CAGCTG	1 cut(s)	832
RsaI	GTAC	2 cut(s)	47, 784
RsaNI	GTAC	2 cut(s)	46, 783
SaqAI	TTAA	3 cut(s)	77, 459, 1006
SatI	GCNGC	9 cut(s)	12, 141, 188, 390, 450, 504, 651, 792, 830
Sau3AI	GATC	2 cut(s)	120, 915
Sau96I	GGNCC	2 cut(s)	265, 776
SchI	GAGTC	1 cut(s)	914
ScrFI	CCNGG	7 cut(s)	155, 282, 370, 434, 718, 774, 787
SduI	GDGCHC	2 cut(s)	102, 583
SfaNI	GCATC	2 cut(s)	174, 940
SfcI	CTRYAG	1 cut(s)	450
SinI	GGWCC	2 cut(s)	265, 776
SmlI	CTYRAG	2 cut(s)	393, 905
SmoI	CTYRAG	2 cut(s)	393, 905
Sse9I	AATT	5 cut(s)	131, 168, 206, 593, 736
SsiI	CCGC	3 cut(s)	38, 187, 576
SspMI	CTAG	2 cut(s)	348, 539
StyD4I	CCNGG	7 cut(s)	153, 280, 368, 432, 716, 772, 785
StyI	CCWWGG	1 cut(s)	15
TaaI	ACNGT	2 cut(s)	364, 913
TaqI	TCGA	3 cut(s)	465, 591, 918
TasI	AATT	5 cut(s)	131, 168, 206, 593, 736
TatI	WGTACW	1 cut(s)	45
TauI	GCSGC	1 cut(s)	190
Tru1I	TTAA	3 cut(s)	77, 459, 1006
Tru9I	TTAA	3 cut(s)	77, 459, 1006
TscAI	CASTG	3 cut(s)	102, 846, 918
TseFI	GTSAC	1 cut(s)	340
TseI	GCWGC	8 cut(s)	11, 140, 389, 449, 503, 650, 791, 829
Tsp45I	GTSAC	1 cut(s)	340
TspDTI	ATGAA	1 cut(s)	164
TspGWI	ACGGA	1 cut(s)	483
TspRI	CASTG	3 cut(s)	102, 846, 918
VpaK11BI	GGWCC	2 cut(s)	265, 776
XapI	RAATTY	3 cut(s)	168, 206, 593
XceI	RCATGY	3 cut(s)	86, 576, 980
XcmI	CCANNNNNNNNNTGG	2 cut(s)	829, 846
XspI	CTAG	2 cut(s)	348, 539

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.