Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0000313

Physical Location & Seq

Genomic Coordinates Forward (+)

45464063 .. 45465510

Gene Structure 1448 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G023220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGGCAGCAAAGCTTATGCATGGGGTTCAGTATGACAGTTATGGTGGAGGACCTTCTGGTTTACAGGTTGTAGAGGTGGGACTGGGAGTCACAAAGTTCAAAGTGGGTGACAAAGTTGTGGCAATGCTCAGCTATGGTAATGGAGGTGGACTTGGTGAGTTTGCGGCAGCTAATGAGAAATTGGTAGTTTCTAGGCCTCCTGAAGTGTCAGCAGCAGACGGGGCAGGCTTACCGGTTGTTGCTCTTACAGCTCACCAGGCTCTCACCAAAGATGCAGGGATTAAGCTTGATGGAACAAGCCAGCAGAAGAACATACTCATTACCGGTGCCTCAGGTAACGTCGGTCTCTATGCAATCCAACTAGCAAAGCTCGGAAATGCTCATGTCACCGCCACTTGTGGAGCTCGTAACATTGATCTAGTCAAGAGCTTAGGGGCAGATGAGGTTCTTGACTACAAGACCCCTGAAGGGGCAGCTGTCAAGAGCCCATCTGGTCGGAAATATGATTTTGTGATCCATTCTTCATCAAAAGCAATTCCTTGGTCAGTCTTTGAGCTGAATTTGAGCTCAAATGGGAAAGTTATAGACCTTACTGCCGGCCTCAGCTCCTTGTTTACTTTTGTTCTTAAGAAACTCACCTTCTCCAAGAAGAAGCTGGTGCCATTGATCATAAATGCGAAGGGTGAGAACCTGGATTGTCTTACTGTGATTGACTCAAATTTTCCTCTAAACAAAGCTGAAGATGCTTGGGCTAAAAGACTTGATGGCTACAATACAGGGAAGATCATTGTGGAGCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N_2

Protein Analysis

266

Amino Acids

27.83

Weight (kDa)

8.87

Isoelectric Point (pI)

24.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_zinc_N	PF00107	114 - 217	1e-09	Zinc-binding dehydrogenase
ADH_zinc_N_2	PF13602	144 - 264	4.4e-07	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13010
fragaria_vesca	FvH4_2g18240 FvH4_2g18280 FvH4_2g18310 FvH4_2g18320 FvH4_2g18330 FvH4_2g18340 FvH4_2g18350
malus_domestica	MD05G1166800.v1.1 MD05G1167200.v1.1 MD05G1167300.v1.1 MD05G1167400.v1.1 MD05G1167600.v1.1 MD05G1168000.v1.1 MD05G1168200.v1.1 MD05G1168400.v1.1 MD05G1168600.v1.1 MD05G1168700.v1.1 MD05G1168800.v1.1 MD10G1156900.v1.1 MD10G1157000.v1.1 MD10G1157100.v1.1 MD10G1157200.v1.1
prunus_persica	Prupe.8G195100_v2.0.a1 Prupe.8G195100_v2.0.a1 Prupe.8G195300_v2.0.a1 Prupe.8G195600_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G196000_v2.0.a1 Prupe.8G196000_v2.0.a1
pyrus_communis	pycom05g15560 pycom05g15600 pycom05g15610 pycom05g15620 pycom05g15630 pycom10g13550 pycom10g13570
rosa_chinensis	RchiOBHm_Chr6g0283611 RchiOBHm_Chr6g0283631 RchiOBHm_Chr6g0283641 RchiOBHm_Chr6g0283661 RchiOBHm_Chr6g0283681 RchiOBHm_Chr6g0283691 RchiOBHm_Chr6g0283701 RchiOBHm_Chr6g0283711 RchiOBHm_Chr6g0283721
rosa_laevigata	RLG00000012804 RLG00000012807 RLG00000012811
rosa_multiflora	Rmu_co8263921.1_g000001 Rmu_sc0001521.1_g000009 Rmu_sc0002906.1_g000002 Rmu_sc0002906.1_g000011 Rmu_sc0002906.1_g000013 Rmu_sc0005719.1_g000016 Rmu_sc0005719.1_g000022 Rmu_sc0029460.1_g000001
rosa_roxburghii	Rroxscaffold_7G00185240 Rroxscaffold_7G00185250 Rroxscaffold_7G00185270 Rroxscaffold_7G00185280 Rroxscaffold_7G00185290 Rroxscaffold_7G00185330 Rroxscaffold_7G00185350
rosa_rugosa	Rorug06G0156100 Rorug06G0156300 Rorug06G0156400 Rorug06G0156500 Rorug06G0156600 Rorug06G0156700 Rorug06G0156800 Rorug06G0156900 Rorug06G0157000
rosa_samantha	Rh6AG267900 Rh6AG268100 Rh6AG268200 Rh6AG268400 Rh6AG268600 Rh6AG268700 Rh6AG268900 Rh6AG269100 Rh6BG270700 Rh6BG270900 Rh6BG271000 Rh6BG271200 Rh6BG271400 Rh6BG271500 Rh6CG270200 Rh6CG270400 Rh6CG270500 Rh6CG270800 Rh6CG270900 Rh6CG271000 Rh6CG271100 Rh6CG271300 Rh6DG263900 Rh6DG264100 Rh6DG264200 Rh6DG264400 Rh6DG264600 Rh6DG264800 Rh6DG265200
rosa_wichuraiana	Rw6G023210 Rw6G023220 Rw6G023230 Rw6G023240 Rw6G023250 Rw6G023260 Rw6G023270 Rw6G023280

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	326, 658
AciI	CCGC	2 cut(s)	164, 390
AclWI	GGATC	1 cut(s)	508
AcsI	RAATTY	2 cut(s)	559, 718
AcuI	CTGAAG	3 cut(s)	222, 486, 759
AfiI	CCNNNNNNNGG	2 cut(s)	468, 469
AflII	CTTAAG	1 cut(s)	626
AgeI	ACCGGT	2 cut(s)	232, 323
AgsI	TTSAA	1 cut(s)	100
AhdI	GACNNNNNGTC	1 cut(s)	86
AjnI	CCWGG	2 cut(s)	255, 690
Alw21I	GWGCWC	2 cut(s)	406, 569
Alw26I	GTCTC	1 cut(s)	350
AlwI	GGATC	1 cut(s)	508
AoxI	GGCC	2 cut(s)	194, 598
ApeKI	GCWGC	4 cut(s)	5, 167, 212, 473
ApoI	RAATTY	2 cut(s)	559, 718
AsiGI	ACCGGT	2 cut(s)	232, 323
AspS9I	GGNCC	1 cut(s)	50
AsuHPI	GGTGA	7 cut(s)	119, 167, 245, 256, 379, 628, 695
AvaII	GGWCC	1 cut(s)	50
AxyI	CCTNAGG	1 cut(s)	331
BanI	GGYRCC	2 cut(s)	326, 658
BanII	GRGCYC	3 cut(s)	406, 488, 569
Bbv12I	GWGCWC	2 cut(s)	406, 569
BbvCI	CCTCAGC	1 cut(s)	602
BbvI	GCAGC	4 cut(s)	17, 179, 224, 485
BccI	CCATC	3 cut(s)	284, 496, 758
BciT130I	CCWGG	2 cut(s)	257, 692
BclI	TGATCA	1 cut(s)	666
BcoDI	GTCTC	1 cut(s)	350
BfaI	CTAG	3 cut(s)	192, 362, 419
BfrI	CTTAAG	1 cut(s)	626
BisI	GCNGC	5 cut(s)	6, 165, 168, 213, 474
BlpI	GCTNAGC	1 cut(s)	128
BlsI	GCNGC	5 cut(s)	7, 166, 169, 214, 475
Bme1390I	CCNGG	2 cut(s)	257, 692
Bme18I	GGWCC	1 cut(s)	50
BmeRI	GACNNNNNGTC	1 cut(s)	86
BmgT120I	GGNCC	1 cut(s)	50
BmiI	GGNNCC	2 cut(s)	328, 660
BmrFI	CCNGG	2 cut(s)	257, 692
BmrI	ACTGGG	1 cut(s)	92
BmsI	GCATC	2 cut(s)	262, 733
BmuI	ACTGGG	1 cut(s)	92
Bpu10I	CCTNAGC	2 cut(s)	430, 602
Bpu1102I	GCTNAGC	1 cut(s)	128
BsaI	GGTCTC	1 cut(s)	350
BsaJI	CCNNGG	1 cut(s)	539
BsaWI	WCCGGW	2 cut(s)	232, 323
Bsc4I	CCNNNNNNNGG	2 cut(s)	468, 469
Bse118I	RCCGGY	3 cut(s)	232, 323, 596
Bse1I	ACTGG	1 cut(s)	87
Bse21I	CCTNAGG	1 cut(s)	331
Bse3DI	GCAATG	1 cut(s)	129
BseBI	CCWGG	2 cut(s)	257, 692
BseDI	CCNNGG	1 cut(s)	539
BseLI	CCNNNNNNNGG	2 cut(s)	468, 469
BseMI	GCAATG	1 cut(s)	129
BseMII	CTCAG	3 cut(s)	142, 345, 616
BseNI	ACTGG	1 cut(s)	87
BseXI	GCAGC	4 cut(s)	17, 179, 224, 485
BshFI	GGCC	2 cut(s)	196, 600
BshNI	GGYRCC	2 cut(s)	326, 658
BshTI	ACCGGT	2 cut(s)	232, 323
BsiHKAI	GWGCWC	2 cut(s)	406, 569
BsiSI	CCGG	3 cut(s)	233, 324, 597
BslFI	GGGAC	1 cut(s)	93
BslI	CCNNNNNNNGG	2 cut(s)	468, 469
BsmAI	GTCTC	1 cut(s)	350
BsmFI	GGGAC	1 cut(s)	93
BsnI	GGCC	2 cut(s)	196, 600
Bso31I	GGTCTC	1 cut(s)	350
Bsp1286I	GDGCHC	3 cut(s)	406, 488, 569
Bsp143I	GATC	4 cut(s)	415, 513, 666, 783
Bsp1720I	GCTNAGC	1 cut(s)	128
BspACI	CCGC	2 cut(s)	164, 390
BspANI	GGCC	2 cut(s)	196, 600
BspCNI	CTCAG	3 cut(s)	141, 344, 615
BspLI	GGNNCC	2 cut(s)	328, 660
BspPI	GGATC	1 cut(s)	508
BspT107I	GGYRCC	2 cut(s)	326, 658
BspTI	CTTAAG	1 cut(s)	626
BspTNI	GGTCTC	1 cut(s)	350
BsrDI	GCAATG	1 cut(s)	129
BsrFI	RCCGGY	3 cut(s)	232, 323, 596
BsrI	ACTGG	1 cut(s)	87
BssAI	RCCGGY	3 cut(s)	232, 323, 596
BssECI	CCNNGG	1 cut(s)	539
BssMI	GATC	4 cut(s)	415, 513, 666, 783
BssT1I	CCWWGG	1 cut(s)	539
Bst2UI	CCWGG	2 cut(s)	257, 692
Bst4CI	ACNGT	2 cut(s)	38, 706
BstAFI	CTTAAG	1 cut(s)	626
BstC8I	GCNNGC	3 cut(s)	226, 302, 598
BstDEI	CTNAG	4 cut(s)	128, 331, 430, 602
BstKTI	GATC	4 cut(s)	418, 516, 669, 786
BstMAI	GTCTC	1 cut(s)	350
BstMBI	GATC	4 cut(s)	415, 513, 666, 783
BstMWI	GCNNNNNNNGC	4 cut(s)	221, 248, 257, 743
BstNI	CCWGG	2 cut(s)	257, 692
BstSCI	CCNGG	2 cut(s)	255, 690
BstV1I	GCAGC	4 cut(s)	17, 179, 224, 485
Bsu36I	CCTNAGG	1 cut(s)	331
BsuRI	GGCC	2 cut(s)	196, 600
Cac8I	GCNNGC	3 cut(s)	226, 302, 598
Cfr10I	RCCGGY	3 cut(s)	232, 323, 596
Cfr13I	GGNCC	1 cut(s)	50
CspAI	ACCGGT	2 cut(s)	232, 323
CviAII	CATG	2 cut(s)	20, 383
DdeI	CTNAG	4 cut(s)	128, 331, 430, 602
DpnI	GATC	4 cut(s)	417, 515, 668, 785
DpnII	GATC	4 cut(s)	415, 513, 666, 783
DriI	GACNNNNNGTC	1 cut(s)	86
Eam1105I	GACNNNNNGTC	1 cut(s)	86
Ecl136II	GAGCTC	2 cut(s)	404, 567
Eco130I	CCWWGG	1 cut(s)	539
Eco147I	AGGCCT	1 cut(s)	196
Eco24I	GRGCYC	3 cut(s)	406, 488, 569
Eco31I	GGTCTC	1 cut(s)	350
Eco47I	GGWCC	1 cut(s)	50
Eco53kI	GAGCTC	2 cut(s)	404, 567
Eco57I	CTGAAG	3 cut(s)	222, 486, 759
Eco81I	CCTNAGG	1 cut(s)	331
EcoICRI	GAGCTC	2 cut(s)	404, 567
EcoO109I	RGGNCCY	1 cut(s)	50
EcoRII	CCWGG	2 cut(s)	255, 690
EcoT14I	CCWWGG	1 cut(s)	539
EcoT22I	ATGCAT	1 cut(s)	21
EcoT38I	GRGCYC	3 cut(s)	406, 488, 569
ErhI	CCWWGG	1 cut(s)	539
FaeI	CATG	2 cut(s)	23, 386
FaqI	GGGAC	1 cut(s)	93
FatI	CATG	2 cut(s)	19, 382
FbaI	TGATCA	1 cut(s)	666
Fnu4HI	GCNGC	5 cut(s)	6, 165, 168, 213, 474
FriOI	GRGCYC	3 cut(s)	406, 488, 569
Fsp4HI	GCNGC	5 cut(s)	6, 165, 168, 213, 474
FspBI	CTAG	3 cut(s)	192, 362, 419
GluI	GCNGC	5 cut(s)	6, 165, 168, 213, 474
HaeIII	GGCC	2 cut(s)	196, 600
HapII	CCGG	3 cut(s)	233, 324, 597
Hin1II	CATG	2 cut(s)	23, 386
HindIII	AAGCTT	2 cut(s)	11, 284
HinfI	GANTC	2 cut(s)	87, 713
HpaII	CCGG	3 cut(s)	233, 324, 597
HphI	GGTGA	7 cut(s)	119, 167, 245, 256, 379, 628, 695
Hpy166II	GTNNAC	3 cut(s)	62, 149, 615
Hpy188I	TCNGA	2 cut(s)	374, 498
Hpy188III	TCNNGA	4 cut(s)	200, 424, 449, 481
Hpy8I	GTNNAC	3 cut(s)	62, 149, 615
Hpy99I	CGWCG	1 cut(s)	344
HpyAV	CCTTC	4 cut(s)	63, 461, 649, 673
HpyCH4III	ACNGT	2 cut(s)	38, 706
HpyCH4IV	ACGT	1 cut(s)	339
HpyCH4V	TGCA	3 cut(s)	19, 275, 353
HpyF10VI	GCNNNNNNNGC	4 cut(s)	221, 248, 257, 743
HpyF3I	CTNAG	4 cut(s)	128, 331, 430, 602
HpySE526I	ACGT	1 cut(s)	339
Hsp92II	CATG	2 cut(s)	23, 386
KroI	GCCGGC	1 cut(s)	596
KroNI	GCCGGC	1 cut(s)	598
Ksp22I	TGATCA	1 cut(s)	666
Kzo9I	GATC	4 cut(s)	415, 513, 666, 783
LmnI	GCTCC	3 cut(s)	401, 611, 793
Lsp1109I	GCAGC	4 cut(s)	17, 179, 224, 485
LweI	GCATC	2 cut(s)	262, 733
MaeI	CTAG	3 cut(s)	192, 362, 419
MaeII	ACGT	1 cut(s)	339
MaeIII	GTNAC	5 cut(s)	88, 107, 335, 385, 407
MalI	GATC	4 cut(s)	417, 515, 668, 785
MboI	GATC	4 cut(s)	415, 513, 666, 783
MboII	GAAGA	5 cut(s)	319, 513, 661, 752, 793
MhlI	GDGCHC	3 cut(s)	406, 488, 569
MluCI	AATT	4 cut(s)	179, 534, 559, 718
MlyI	GAGTC	2 cut(s)	96, 707
MmeI	TCCRAC	2 cut(s)	382, 476
MnlI	CCTC	8 cut(s)	41, 67, 137, 207, 340, 436, 611, 735
Mph1103I	ATGCAT	1 cut(s)	21
MroNI	GCCGGC	1 cut(s)	596
MseI	TTAA	2 cut(s)	282, 627
MspA1I	CMGCKG	1 cut(s)	476
MspCI	CTTAAG	1 cut(s)	626
MspI	CCGG	3 cut(s)	233, 324, 597
MspR9I	CCNGG	2 cut(s)	257, 692
MvaI	CCWGG	2 cut(s)	257, 692
MwoI	GCNNNNNNNGC	4 cut(s)	221, 248, 257, 743
NaeI	GCCGGC	1 cut(s)	598
NdeII	GATC	4 cut(s)	415, 513, 666, 783
NgoMIV	GCCGGC	1 cut(s)	596
NlaIII	CATG	2 cut(s)	23, 386
NlaIV	GGNNCC	2 cut(s)	328, 660
NmuCI	GTSAC	3 cut(s)	88, 107, 385
NsiI	ATGCAT	1 cut(s)	21
PceI	AGGCCT	1 cut(s)	196
PdiI	GCCGGC	1 cut(s)	598
PinAI	ACCGGT	2 cut(s)	232, 323
PkrI	GCNGC	5 cut(s)	7, 166, 169, 214, 475
PleI	GAGTC	2 cut(s)	95, 707
PpsI	GAGTC	2 cut(s)	95, 707
PpuMI	RGGWCCY	1 cut(s)	50
Psp124BI	GAGCTC	2 cut(s)	406, 569
Psp5II	RGGWCCY	1 cut(s)	50
Psp6I	CCWGG	2 cut(s)	255, 690
PspGI	CCWGG	2 cut(s)	255, 690
PspN4I	GGNNCC	2 cut(s)	328, 660
PspPI	GGNCC	1 cut(s)	50
PspPPI	RGGWCCY	1 cut(s)	50
PvuII	CAGCTG	1 cut(s)	476
SacI	GAGCTC	2 cut(s)	406, 569
SaqAI	TTAA	2 cut(s)	282, 627
SatI	GCNGC	5 cut(s)	6, 165, 168, 213, 474
Sau3AI	GATC	4 cut(s)	415, 513, 666, 783
Sau96I	GGNCC	1 cut(s)	50
SchI	GAGTC	2 cut(s)	96, 707
ScrFI	CCNGG	2 cut(s)	257, 692
SduI	GDGCHC	3 cut(s)	406, 488, 569
SfaNI	GCATC	2 cut(s)	262, 733
SinI	GGWCC	1 cut(s)	50
SmlI	CTYRAG	1 cut(s)	626
SmoI	CTYRAG	1 cut(s)	626
Sse9I	AATT	4 cut(s)	179, 534, 559, 718
SseBI	AGGCCT	1 cut(s)	196
SsiI	CCGC	2 cut(s)	164, 390
SspMI	CTAG	3 cut(s)	192, 362, 419
SstI	GAGCTC	2 cut(s)	406, 569
StuI	AGGCCT	1 cut(s)	196
StyD4I	CCNGG	2 cut(s)	255, 690
StyI	CCWWGG	1 cut(s)	539
TaaI	ACNGT	2 cut(s)	38, 706
TaiI	ACGT	1 cut(s)	342
TaqII	GACCGA	1 cut(s)	332
TasI	AATT	4 cut(s)	179, 534, 559, 718
TauI	GCSGC	1 cut(s)	167
Tru1I	TTAA	2 cut(s)	282, 627
Tru9I	TTAA	2 cut(s)	282, 627
TseFI	GTSAC	3 cut(s)	88, 107, 385
TseI	GCWGC	4 cut(s)	5, 167, 212, 473
Tsp45I	GTSAC	3 cut(s)	88, 107, 385
TspDTI	ATGAA	1 cut(s)	513
Vha464I	CTTAAG	1 cut(s)	626
VpaK11BI	GGWCC	1 cut(s)	50
XapI	RAATTY	2 cut(s)	559, 718
XcmI	CCANNNNNNNNNTGG	1 cut(s)	652
XspI	CTAG	3 cut(s)	192, 362, 419
Zsp2I	ATGCAT	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.