Prupe.8G196000_v2.0.a1

quinone-oxidoreductase homolog, chloroplastic

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0000313
Physical Location & Seq
Forward (+)
18785807 .. 18789102
3296 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G196000.2

Sequence Viewer

Length: 990 bp
ATGGCAAAAAATGTTATGCATGCGGTTCAGTATGATGGCTACGGTGGAGGACCTTCTGGCTTAAAGCATGTTGAAATTCCAATTCCCAATCCAAACAAAGATGAGGTGTTGCTGAAATTGGAGGCAGCTAGTCTAAACCCATTTGATTGGAAAGTTCAGAAAGGCATGCTGTGGCCATTGTTGCCTCGCAGATTTCCACACATACCTGGTACTGATGTGGCAGGAGAGGTTGTACAGGTAGGACCAGGAGTGAAAAAATTCAAAGCTGGTGACAAAGTTGTAGCTATGGTTAACCCTCTTAATGGAGGTGGACTAGCTGAGCTTGCCGTGACTAAGGAAAGCTTGACTGCTACAAGGCCACCTGAAGTTTCAGCGGCCACTGCCGTAGGATTACCTGTTGCTGGTCTCACTGCTCACCAGGCCCTTATCCAATCTGCTGGGATCAAGCTTGATGGAAGTGGTGAGGAAGCAAACATTCTGATCACAGCTGCTTCTGGCGGTGTAGGTCTCTATGCAGTTCAACTAGCAAAGCTTGGAAACACTCATGTGACAGCCACTTGTGGAGCTCGTAACCTTGAATTTGTCAAGAGCCTAGGTGCTGATGAGGTTATTGACTACAAGACCCCAGAAGGAGCAACTCTGAAGAGTCCATCCGGTCGAAAATATGATGCTGTGATCCATTGTGCAACGGGCATTCCTTGGTCAACTTTTGAGCCTAATTTGAGTGCAAATGGTAAGGTAATAGATATCACTCCCGGCCTCAGTGCCGTAGCGAACTTTGCTTTGGGAAAACTTACCTTTTCCAAGAAGCAACTGGTGCCACTGCTCTTATCTCCCAAGGCTCAGAACCTGGATTATCTTCTTAAGTTGGTTGGAGAAGGGAAGCTCAAGACAATAATAGACTCAAAGTATCCCCTGACCAAGGCAGAGGACGCTTGGGCTAAGAGCATTGATGGGCATGCTACTGGAAAGATAATTGTGGAGCCTTAG

Protein Analysis

330

Amino Acids

34.46

Weight (kDa)

8.82

Isoelectric Point (pI)

25.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000313)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G13010
fragaria_vesca FvH4_2g18240 FvH4_2g18280 FvH4_2g18310 FvH4_2g18320 FvH4_2g18330 FvH4_2g18340 FvH4_2g18350
malus_domestica MD05G1166800.v1.1 MD05G1167200.v1.1 MD05G1167300.v1.1 MD05G1167400.v1.1 MD05G1167600.v1.1 MD05G1168000.v1.1 MD05G1168200.v1.1 MD05G1168400.v1.1 MD05G1168600.v1.1 MD05G1168700.v1.1 MD05G1168800.v1.1 MD10G1156900.v1.1 MD10G1157000.v1.1 MD10G1157100.v1.1 MD10G1157200.v1.1
prunus_persica Prupe.8G195100_v2.0.a1 Prupe.8G195100_v2.0.a1 Prupe.8G195300_v2.0.a1 Prupe.8G195600_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G196000_v2.0.a1 Prupe.8G196000_v2.0.a1
pyrus_communis pycom05g15560 pycom05g15600 pycom05g15610 pycom05g15620 pycom05g15630 pycom10g13550 pycom10g13570
rosa_chinensis RchiOBHm_Chr6g0283611 RchiOBHm_Chr6g0283631 RchiOBHm_Chr6g0283641 RchiOBHm_Chr6g0283661 RchiOBHm_Chr6g0283681 RchiOBHm_Chr6g0283691 RchiOBHm_Chr6g0283701 RchiOBHm_Chr6g0283711 RchiOBHm_Chr6g0283721
rosa_laevigata RLG00000012804 RLG00000012807 RLG00000012811
rosa_multiflora Rmu_co8263921.1_g000001 Rmu_sc0001521.1_g000009 Rmu_sc0002906.1_g000002 Rmu_sc0002906.1_g000011 Rmu_sc0002906.1_g000013 Rmu_sc0005719.1_g000016 Rmu_sc0005719.1_g000022 Rmu_sc0029460.1_g000001
rosa_roxburghii Rroxscaffold_7G00185240 Rroxscaffold_7G00185250 Rroxscaffold_7G00185270 Rroxscaffold_7G00185280 Rroxscaffold_7G00185290 Rroxscaffold_7G00185330 Rroxscaffold_7G00185350
rosa_rugosa Rorug06G0156100 Rorug06G0156300 Rorug06G0156400 Rorug06G0156500 Rorug06G0156600 Rorug06G0156700 Rorug06G0156800 Rorug06G0156900 Rorug06G0157000
rosa_samantha Rh6AG267900 Rh6AG268100 Rh6AG268200 Rh6AG268400 Rh6AG268600 Rh6AG268700 Rh6AG268900 Rh6AG269100 Rh6BG270700 Rh6BG270900 Rh6BG271000 Rh6BG271200 Rh6BG271400 Rh6BG271500 Rh6CG270200 Rh6CG270400 Rh6CG270500 Rh6CG270800 Rh6CG270900 Rh6CG271000 Rh6CG271100 Rh6CG271300 Rh6DG263900 Rh6DG264100 Rh6DG264200 Rh6DG264400 Rh6DG264600 Rh6DG264800 Rh6DG265200
rosa_wichuraiana Rw6G023210 Rw6G023220 Rw6G023230 Rw6G023240 Rw6G023250 Rw6G023260 Rw6G023270 Rw6G023280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 817
AciI CCGC 3 cut(s) 23, 374, 498
AclWI GGATC 2 cut(s) 449, 670
AcoI YGGCCR 2 cut(s) 173, 375
AcsI RAATTY 3 cut(s) 75, 257, 578
AcuI CTGAAG 2 cut(s) 384, 662
AfaI GTAC 2 cut(s) 211, 234
AfiI CCNNNNNNNGG 3 cut(s) 302, 401, 922
AflII CTTAAG 1 cut(s) 863
AgsI TTSAA 4 cut(s) 74, 262, 521, 578
AjnI CCWGG 4 cut(s) 205, 244, 417, 849
AjuI GAANNNNNNNTTGG 2 cut(s) 767, 799
AleI CACNNNNGTG 1 cut(s) 545
Alw21I GWGCWC 1 cut(s) 568
Alw26I GTCTC 2 cut(s) 410, 512
AlwI GGATC 2 cut(s) 449, 670
AlwNI CAGNNNCTG 1 cut(s) 850
AoxI GGCC 5 cut(s) 173, 356, 375, 420, 757
ApeKI GCWGC 2 cut(s) 125, 488
ApoI RAATTY 3 cut(s) 75, 257, 578
Asp700I GAANNNNTTC 1 cut(s) 257
AspA2I CCTAGG 1 cut(s) 592
AspS9I GGNCC 3 cut(s) 50, 242, 421
AsuC2I CCSGG 1 cut(s) 756
AsuHPI GGTGA 3 cut(s) 281, 407, 473
AvaII GGWCC 2 cut(s) 50, 242
AvrII CCTAGG 1 cut(s) 592
BaeI ACNNNNGTAYC 2 cut(s) 201, 234
BalI TGGCCA 1 cut(s) 175
BanI GGYRCC 1 cut(s) 817
BanII GRGCYC 1 cut(s) 568
Bbv12I GWGCWC 1 cut(s) 568
BbvI GCAGC 2 cut(s) 137, 475
BccI CCATC 4 cut(s) 29, 446, 658, 947
BceAI ACGGC 3 cut(s) 311, 368, 752
BciT130I CCWGG 4 cut(s) 207, 246, 419, 851
BciVI GTATCC 1 cut(s) 921
BclI TGATCA 1 cut(s) 480
BcnI CCSGG 1 cut(s) 756
BcoDI GTCTC 2 cut(s) 410, 512
BfaI CTAG 4 cut(s) 129, 314, 524, 593
BfrI CTTAAG 1 cut(s) 863
BfuI GTATCC 1 cut(s) 921
BisI GCNGC 3 cut(s) 126, 375, 489
BlnI CCTAGG 1 cut(s) 592
BlpI GCTNAGC 1 cut(s) 318
BlsI GCNGC 3 cut(s) 127, 376, 490
Bme1390I CCNGG 5 cut(s) 207, 246, 419, 756, 851
Bme18I GGWCC 2 cut(s) 50, 242
BmgT120I GGNCC 3 cut(s) 50, 242, 421
BmiI GGNNCC 2 cut(s) 819, 984
BmrFI CCNGG 5 cut(s) 207, 246, 419, 756, 851
BmsI GCATC 1 cut(s) 658
Bpu1102I GCTNAGC 1 cut(s) 318
BpuEI CTTGAG 1 cut(s) 872
BpuMI CCSGG 1 cut(s) 756
BsaI GGTCTC 2 cut(s) 410, 512
BsaJI CCNNGG 4 cut(s) 592, 698, 837, 921
BsaWI WCCGGW 1 cut(s) 653
BsaXI ACNNNNNCTCC 2 cut(s) 216, 246
Bsc4I CCNNNNNNNGG 3 cut(s) 302, 401, 922
Bse1I ACTGG 2 cut(s) 819, 970
BseBI CCWGG 4 cut(s) 207, 246, 419, 851
BseDI CCNNGG 4 cut(s) 592, 698, 837, 921
BseGI GGATG 1 cut(s) 650
BseLI CCNNNNNNNGG 3 cut(s) 302, 401, 922
BseMII CTCAG 3 cut(s) 309, 775, 857
BseNI ACTGG 2 cut(s) 819, 970
BseXI GCAGC 2 cut(s) 137, 475
BseYI CCCAGC 1 cut(s) 437
Bsh1285I CGRYCG 1 cut(s) 658
BshFI GGCC 5 cut(s) 175, 358, 377, 422, 759
BshNI GGYRCC 1 cut(s) 817
BsiEI CGRYCG 1 cut(s) 658
BsiHKAI GWGCWC 1 cut(s) 568
BsiSI CCGG 2 cut(s) 654, 756
BslI CCNNNNNNNGG 3 cut(s) 302, 401, 922
BsmAI GTCTC 2 cut(s) 410, 512
BsmI GAATGC 1 cut(s) 693
BsnI GGCC 5 cut(s) 175, 358, 377, 422, 759
Bso31I GGTCTC 2 cut(s) 410, 512
Bsp1286I GDGCHC 1 cut(s) 568
Bsp1407I TGTACA 1 cut(s) 232
Bsp143I GATC 3 cut(s) 441, 480, 675
Bsp1720I GCTNAGC 1 cut(s) 318
BspACI CCGC 3 cut(s) 23, 374, 498
BspANI GGCC 5 cut(s) 175, 358, 377, 422, 759
BspCNI CTCAG 3 cut(s) 310, 774, 856
BspLI GGNNCC 2 cut(s) 819, 984
BspPI GGATC 2 cut(s) 449, 670
BspT107I GGYRCC 1 cut(s) 817
BspTI CTTAAG 1 cut(s) 863
BspTNI GGTCTC 2 cut(s) 410, 512
BsrGI TGTACA 1 cut(s) 232
BsrI ACTGG 2 cut(s) 819, 970
BssECI CCNNGG 4 cut(s) 592, 698, 837, 921
BssMI GATC 3 cut(s) 441, 480, 675
BssT1I CCWWGG 4 cut(s) 592, 698, 837, 921
Bst2UI CCWGG 4 cut(s) 207, 246, 419, 851
Bst4CI ACNGT 1 cut(s) 44
Bst6I CTCTTC 1 cut(s) 638
BstAFI CTTAAG 1 cut(s) 863
BstAPI GCANNNNNTGC 1 cut(s) 817
BstAUI TGTACA 1 cut(s) 232
BstC8I GCNNGC 4 cut(s) 21, 167, 324, 960
BstDEI CTNAG 6 cut(s) 318, 333, 761, 843, 942, 987
BstENI CCTNNNNNAGG 1 cut(s) 920
BstF5I GGATG 1 cut(s) 650
BstKTI GATC 3 cut(s) 444, 483, 678
BstMAI GTCTC 2 cut(s) 410, 512
BstMBI GATC 3 cut(s) 441, 480, 675
BstMCI CGRYCG 1 cut(s) 658
BstMWI GCNNNNNNNGC 7 cut(s) 181, 323, 380, 419, 779, 817, 932
BstNI CCWGG 4 cut(s) 207, 246, 419, 851
BstNSI RCATGY 4 cut(s) 23, 71, 169, 962
BstSCI CCNGG 5 cut(s) 205, 244, 417, 754, 849
BstV1I GCAGC 2 cut(s) 137, 475
BstXI CCANNNNNNTGG 2 cut(s) 147, 437
BsuI GTATCC 1 cut(s) 921
BsuRI GGCC 5 cut(s) 175, 358, 377, 422, 759
BtsCI GGATG 1 cut(s) 650
BtsI GCAGTG 3 cut(s) 378, 408, 821
BtsIMutI CAGTG 4 cut(s) 378, 408, 769, 821
Cac8I GCNNGC 4 cut(s) 21, 167, 324, 960
CaiI CAGNNNCTG 1 cut(s) 850
Cfr13I GGNCC 3 cut(s) 50, 242, 421
CseI GACGC 1 cut(s) 941
CsiI ACCWGGT 1 cut(s) 205
Csp6I GTAC 2 cut(s) 210, 233
CviAII CATG 5 cut(s) 20, 68, 166, 545, 959
CviQI GTAC 2 cut(s) 210, 233
DdeI CTNAG 6 cut(s) 318, 333, 761, 843, 942, 987
DpnI GATC 3 cut(s) 443, 482, 677
DpnII GATC 3 cut(s) 441, 480, 675
EaeI YGGCCR 2 cut(s) 173, 375
Eam1104I CTCTTC 1 cut(s) 638
EarI CTCTTC 1 cut(s) 638
Ecl136II GAGCTC 1 cut(s) 566
Eco130I CCWWGG 4 cut(s) 592, 698, 837, 921
Eco24I GRGCYC 1 cut(s) 568
Eco31I GGTCTC 2 cut(s) 410, 512
Eco32I GATATC 1 cut(s) 748
Eco47I GGWCC 2 cut(s) 50, 242
Eco53kI GAGCTC 1 cut(s) 566
Eco57I CTGAAG 2 cut(s) 384, 662
EcoICRI GAGCTC 1 cut(s) 566
EcoNI CCTNNNNNAGG 1 cut(s) 920
EcoO109I RGGNCCY 2 cut(s) 50, 421
EcoRII CCWGG 4 cut(s) 205, 244, 417, 849
EcoRV GATATC 1 cut(s) 748
EcoT14I CCWWGG 4 cut(s) 592, 698, 837, 921
EcoT22I ATGCAT 1 cut(s) 21
EcoT38I GRGCYC 1 cut(s) 568
ErhI CCWWGG 4 cut(s) 592, 698, 837, 921
FaeI CATG 5 cut(s) 23, 71, 169, 548, 962
FalI AAGNNNNNCTT 2 cut(s) 326, 358
FatI CATG 5 cut(s) 19, 67, 165, 544, 958
FbaI TGATCA 1 cut(s) 480
Fnu4HI GCNGC 3 cut(s) 126, 375, 489
FokI GGATG 1 cut(s) 637
FriOI GRGCYC 1 cut(s) 568
Fsp4HI GCNGC 3 cut(s) 126, 375, 489
FspBI CTAG 4 cut(s) 129, 314, 524, 593
GluI GCNGC 3 cut(s) 126, 375, 489
GsaI CCCAGC 1 cut(s) 441
HaeIII GGCC 5 cut(s) 175, 358, 377, 422, 759
HapII CCGG 2 cut(s) 654, 756
HgaI GACGC 1 cut(s) 941
Hin1II CATG 5 cut(s) 23, 71, 169, 548, 962
HincII GTYRAC 2 cut(s) 292, 705
HindII GTYRAC 2 cut(s) 292, 705
HindIII AAGCTT 3 cut(s) 340, 446, 530
HinfI GANTC 2 cut(s) 646, 902
HpaI GTTAAC 1 cut(s) 292
HpaII CCGG 2 cut(s) 654, 756
HphI GGTGA 3 cut(s) 281, 407, 473
Hpy166II GTNNAC 3 cut(s) 292, 311, 705
Hpy188I TCNGA 4 cut(s) 159, 480, 642, 846
Hpy188III TCNNGA 2 cut(s) 586, 889
Hpy8I GTNNAC 3 cut(s) 292, 311, 705
HpyAV CCTTC 3 cut(s) 63, 623, 872
HpyCH4III ACNGT 1 cut(s) 44
HpyCH4V TGCA 4 cut(s) 19, 515, 686, 728
HpyF10VI GCNNNNNNNGC 7 cut(s) 181, 323, 380, 419, 779, 817, 932
HpyF3I CTNAG 6 cut(s) 318, 333, 761, 843, 942, 987
Hsp92II CATG 5 cut(s) 23, 71, 169, 548, 962
Ksp22I TGATCA 1 cut(s) 480
KspAI GTTAAC 1 cut(s) 292
Kzo9I GATC 3 cut(s) 441, 480, 675
LmnI GCTCC 3 cut(s) 563, 632, 982
Lsp1109I GCAGC 2 cut(s) 137, 475
LweI GCATC 1 cut(s) 658
MabI ACCWGGT 1 cut(s) 205
MaeI CTAG 4 cut(s) 129, 314, 524, 593
MaeIII GTNAC 4 cut(s) 269, 328, 547, 569
MalI GATC 3 cut(s) 443, 482, 677
MboI GATC 3 cut(s) 441, 480, 675
MboII GAAGA 2 cut(s) 655, 851
MhlI GDGCHC 1 cut(s) 568
MlsI TGGCCA 1 cut(s) 175
MluCI AATT 7 cut(s) 75, 81, 116, 257, 578, 718, 975
MluNI TGGCCA 1 cut(s) 175
MlyI GAGTC 2 cut(s) 655, 896
MmeI TCCRAC 1 cut(s) 853
Mox20I TGGCCA 1 cut(s) 175
Mph1103I ATGCAT 1 cut(s) 21
MroXI GAANNNNTTC 1 cut(s) 257
MscI TGGCCA 1 cut(s) 175
MseI TTAA 4 cut(s) 62, 291, 300, 864
MslI CAYNNNNRTG 1 cut(s) 545
Msp20I TGGCCA 1 cut(s) 175
MspA1I CMGCKG 2 cut(s) 374, 488
MspCI CTTAAG 1 cut(s) 863
MspI CCGG 2 cut(s) 654, 756
MspR9I CCNGG 5 cut(s) 207, 246, 419, 756, 851
Mva1269I GAATGC 1 cut(s) 693
MvaI CCWGG 4 cut(s) 207, 246, 419, 851
MwoI GCNNNNNNNGC 7 cut(s) 181, 323, 380, 419, 779, 817, 932
NciI CCSGG 1 cut(s) 756
NdeII GATC 3 cut(s) 441, 480, 675
NlaIII CATG 5 cut(s) 23, 71, 169, 548, 962
NlaIV GGNNCC 2 cut(s) 819, 984
NmuCI GTSAC 3 cut(s) 269, 328, 547
NsiI ATGCAT 1 cut(s) 21
NspI RCATGY 4 cut(s) 23, 71, 169, 962
OliI CACNNNNGTG 1 cut(s) 545
PaeI GCATGC 3 cut(s) 23, 169, 962
PctI GAATGC 1 cut(s) 693
PdmI GAANNNNTTC 1 cut(s) 257
PkrI GCNGC 3 cut(s) 127, 376, 490
PleI GAGTC 2 cut(s) 654, 896
PpsI GAGTC 2 cut(s) 654, 896
PpuMI RGGWCCY 1 cut(s) 50
Psp124BI GAGCTC 1 cut(s) 568
Psp5II RGGWCCY 1 cut(s) 50
Psp6I CCWGG 4 cut(s) 205, 244, 417, 849
PspFI CCCAGC 1 cut(s) 437
PspGI CCWGG 4 cut(s) 205, 244, 417, 849
PspN4I GGNNCC 2 cut(s) 819, 984
PspPI GGNCC 3 cut(s) 50, 242, 421
PspPPI RGGWCCY 1 cut(s) 50
PstNI CAGNNNCTG 1 cut(s) 850
PvuII CAGCTG 1 cut(s) 488
RsaI GTAC 2 cut(s) 211, 234
RsaNI GTAC 2 cut(s) 210, 233
RseI CAYNNNNRTG 1 cut(s) 545
SacI GAGCTC 1 cut(s) 568
SaqAI TTAA 4 cut(s) 62, 291, 300, 864
SatI GCNGC 3 cut(s) 126, 375, 489
Sau3AI GATC 3 cut(s) 441, 480, 675
Sau96I GGNCC 3 cut(s) 50, 242, 421
SchI GAGTC 2 cut(s) 655, 896
ScrFI CCNGG 5 cut(s) 207, 246, 419, 756, 851
SduI GDGCHC 1 cut(s) 568
SexAI ACCWGGT 1 cut(s) 205
SfaNI GCATC 1 cut(s) 658
SinI GGWCC 2 cut(s) 50, 242
SmiMI CAYNNNNRTG 1 cut(s) 545
SmlI CTYRAG 2 cut(s) 863, 887
SmoI CTYRAG 2 cut(s) 863, 887
SphI GCATGC 3 cut(s) 23, 169, 962
Sse9I AATT 7 cut(s) 75, 81, 116, 257, 578, 718, 975
SsiI CCGC 3 cut(s) 23, 374, 498
SspMI CTAG 4 cut(s) 129, 314, 524, 593
SstI GAGCTC 1 cut(s) 568
StyD4I CCNGG 5 cut(s) 205, 244, 417, 754, 849
StyI CCWWGG 4 cut(s) 592, 698, 837, 921
TaaI ACNGT 1 cut(s) 44
TaqI TCGA 1 cut(s) 658
TasI AATT 7 cut(s) 75, 81, 116, 257, 578, 718, 975
TatI WGTACW 1 cut(s) 232
TauI GCSGC 1 cut(s) 377
Tru1I TTAA 4 cut(s) 62, 291, 300, 864
Tru9I TTAA 4 cut(s) 62, 291, 300, 864
TscAI CASTG 4 cut(s) 385, 415, 769, 828
TseFI GTSAC 3 cut(s) 269, 328, 547
TseI GCWGC 2 cut(s) 125, 488
Tsp45I GTSAC 3 cut(s) 269, 328, 547
TspRI CASTG 4 cut(s) 385, 415, 769, 828
Vha464I CTTAAG 1 cut(s) 863
VpaK11BI GGWCC 2 cut(s) 50, 242
XagI CCTNNNNNAGG 1 cut(s) 920
XapI RAATTY 3 cut(s) 75, 257, 578
XceI RCATGY 4 cut(s) 23, 71, 169, 962
XcmI CCANNNNNNNNNTGG 1 cut(s) 811
XmaJI CCTAGG 1 cut(s) 592
XmnI GAANNNNTTC 1 cut(s) 257
XspI CTAG 4 cut(s) 129, 314, 524, 593
Zsp2I ATGCAT 1 cut(s) 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.