Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002906.1

Orthogroup ID

OG0000313

Physical Location & Seq

Genomic Coordinates Reverse (-)

42064 .. 43462

Gene Structure 1399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002906.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

atggcagccaagcttatgcatgcggttcagtacgacacccacgttactgatgtggctggagaggttgtagaagttggagaaggagtcaagaacttcaaagtgggtgacaaagttgtggcgatgctcagctatggtaaaggaggtggactcggtgagtttgctgcagctaatgccgaaatggtagttgctaggtcttccgacgtttcagcggcagaaggtgctggcttacccgttgccgctctctctgctcactggcctctcaccaaagatgcagagatcaagcttgatggaacaggggagcagaagaacgtacatactcattactggtgcctctgggggcagatgaggttcttaattgactacaagacccctgaaggggcagctgtcaagagcccatctggtctgaaatatgatttcgtgatccattctgcctcacaagccattccttggtcaattttttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N_2

Protein Analysis

153

Amino Acids

16.31

Weight (kDa)

5.82

Isoelectric Point (pI)

22.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13010
fragaria_vesca	FvH4_2g18240 FvH4_2g18280 FvH4_2g18310 FvH4_2g18320 FvH4_2g18330 FvH4_2g18340 FvH4_2g18350
malus_domestica	MD05G1166800.v1.1 MD05G1167200.v1.1 MD05G1167300.v1.1 MD05G1167400.v1.1 MD05G1167600.v1.1 MD05G1168000.v1.1 MD05G1168200.v1.1 MD05G1168400.v1.1 MD05G1168600.v1.1 MD05G1168700.v1.1 MD05G1168800.v1.1 MD10G1156900.v1.1 MD10G1157000.v1.1 MD10G1157100.v1.1 MD10G1157200.v1.1
prunus_persica	Prupe.8G195100_v2.0.a1 Prupe.8G195100_v2.0.a1 Prupe.8G195300_v2.0.a1 Prupe.8G195600_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G196000_v2.0.a1 Prupe.8G196000_v2.0.a1
pyrus_communis	pycom05g15560 pycom05g15600 pycom05g15610 pycom05g15620 pycom05g15630 pycom10g13550 pycom10g13570
rosa_chinensis	RchiOBHm_Chr6g0283611 RchiOBHm_Chr6g0283631 RchiOBHm_Chr6g0283641 RchiOBHm_Chr6g0283661 RchiOBHm_Chr6g0283681 RchiOBHm_Chr6g0283691 RchiOBHm_Chr6g0283701 RchiOBHm_Chr6g0283711 RchiOBHm_Chr6g0283721
rosa_laevigata	RLG00000012804 RLG00000012807 RLG00000012811
rosa_multiflora	Rmu_co8263921.1_g000001 Rmu_sc0001521.1_g000009 Rmu_sc0002906.1_g000002 Rmu_sc0002906.1_g000011 Rmu_sc0002906.1_g000013 Rmu_sc0005719.1_g000016 Rmu_sc0005719.1_g000022 Rmu_sc0029460.1_g000001
rosa_roxburghii	Rroxscaffold_7G00185240 Rroxscaffold_7G00185250 Rroxscaffold_7G00185270 Rroxscaffold_7G00185280 Rroxscaffold_7G00185290 Rroxscaffold_7G00185330 Rroxscaffold_7G00185350
rosa_rugosa	Rorug06G0156100 Rorug06G0156300 Rorug06G0156400 Rorug06G0156500 Rorug06G0156600 Rorug06G0156700 Rorug06G0156800 Rorug06G0156900 Rorug06G0157000
rosa_samantha	Rh6AG267900 Rh6AG268100 Rh6AG268200 Rh6AG268400 Rh6AG268600 Rh6AG268700 Rh6AG268900 Rh6AG269100 Rh6BG270700 Rh6BG270900 Rh6BG271000 Rh6BG271200 Rh6BG271400 Rh6BG271500 Rh6CG270200 Rh6CG270400 Rh6CG270500 Rh6CG270800 Rh6CG270900 Rh6CG271000 Rh6CG271100 Rh6CG271300 Rh6DG263900 Rh6DG264100 Rh6DG264200 Rh6DG264400 Rh6DG264600 Rh6DG264800 Rh6DG265200
rosa_wichuraiana	Rw6G023210 Rw6G023220 Rw6G023230 Rw6G023240 Rw6G023250 Rw6G023260 Rw6G023270 Rw6G023280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	327
AccB7I	CCANNNNNTGG	1 cut(s)	447
AccBSI	CCGCTC	1 cut(s)	239
AciI	CCGC	3 cut(s)	23, 209, 237
AclWI	GGATC	1 cut(s)	415
AcuI	CTGAAG	1 cut(s)	393
AfaI	GTAC	2 cut(s)	32, 312
AfiI	CCNNNNNNNGG	3 cut(s)	375, 376, 447
AgsI	TTSAA	1 cut(s)	97
AluBI	AGCT	5 cut(s)	13, 129, 167, 283, 383
AluI	AGCT	5 cut(s)	13, 129, 167, 283, 383
AlwI	GGATC	1 cut(s)	415
AoxI	GGCC	1 cut(s)	254
ApeKI	GCWGC	4 cut(s)	5, 161, 164, 380
AsuHPI	GGTGA	3 cut(s)	116, 164, 253
BanI	GGYRCC	1 cut(s)	327
BanII	GRGCYC	1 cut(s)	395
BbsI	GAAGAC	1 cut(s)	186
BbvI	GCAGC	4 cut(s)	17, 148, 176, 392
BccI	CCATC	2 cut(s)	281, 403
BfaI	CTAG	1 cut(s)	189
BfmI	CTRYAG	1 cut(s)	162
BisI	GCNGC	6 cut(s)	6, 162, 165, 210, 237, 381
BlpI	GCTNAGC	1 cut(s)	125
BlsI	GCNGC	6 cut(s)	7, 163, 166, 211, 238, 382
BmiI	GGNNCC	1 cut(s)	329
BmsI	GCATC	2 cut(s)	111, 259
BpiI	GAAGAC	1 cut(s)	186
BplI	GAGNNNNNCTC	2 cut(s)	132, 164
BpmI	CTGGAG	1 cut(s)	78
Bpu1102I	GCTNAGC	1 cut(s)	125
BsaJI	CCNNGG	1 cut(s)	446
BsaXI	ACNNNNNCTCC	4 cut(s)	51, 69, 81, 99
Bsc4I	CCNNNNNNNGG	3 cut(s)	375, 376, 447
Bse1I	ACTGG	2 cut(s)	257, 329
BseDI	CCNNGG	1 cut(s)	446
BseLI	CCNNNNNNNGG	3 cut(s)	375, 376, 447
BseMII	CTCAG	1 cut(s)	139
BseNI	ACTGG	2 cut(s)	257, 329
BseXI	GCAGC	4 cut(s)	17, 148, 176, 392
BshFI	GGCC	1 cut(s)	256
BshNI	GGYRCC	1 cut(s)	327
BslI	CCNNNNNNNGG	3 cut(s)	375, 376, 447
BsnI	GGCC	1 cut(s)	256
Bsp1286I	GDGCHC	1 cut(s)	395
Bsp143I	GATC	2 cut(s)	276, 420
Bsp1720I	GCTNAGC	1 cut(s)	125
BspACI	CCGC	3 cut(s)	23, 209, 237
BspANI	GGCC	1 cut(s)	256
BspCNI	CTCAG	1 cut(s)	138
BspLI	GGNNCC	1 cut(s)	329
BspMAI	CTGCAG	1 cut(s)	166
BspPI	GGATC	1 cut(s)	415
BspT107I	GGYRCC	1 cut(s)	327
BsrBI	CCGCTC	1 cut(s)	239
BsrI	ACTGG	2 cut(s)	257, 329
BssECI	CCNNGG	1 cut(s)	446
BssMI	GATC	2 cut(s)	276, 420
BssT1I	CCWWGG	1 cut(s)	446
BstAPI	GCANNNNNTGC	2 cut(s)	170, 218
BstC8I	GCNNGC	2 cut(s)	21, 223
BstDEI	CTNAG	1 cut(s)	125
BstKTI	GATC	2 cut(s)	279, 423
BstMBI	GATC	2 cut(s)	276, 420
BstMWI	GCNNNNNNNGC	4 cut(s)	170, 218, 245, 437
BstNSI	RCATGY	1 cut(s)	23
BstSFI	CTRYAG	1 cut(s)	162
BstV1I	GCAGC	4 cut(s)	17, 148, 176, 392
BstV2I	GAAGAC	1 cut(s)	186
BsuRI	GGCC	1 cut(s)	256
BtgZI	GCGATG	1 cut(s)	134
BtsIMutI	CAGTG	1 cut(s)	250
Cac8I	GCNNGC	2 cut(s)	21, 223
Csp6I	GTAC	2 cut(s)	31, 311
CviAII	CATG	1 cut(s)	20
CviQI	GTAC	2 cut(s)	31, 311
DdeI	CTNAG	1 cut(s)	125
DpnI	GATC	2 cut(s)	278, 422
DpnII	GATC	2 cut(s)	276, 420
Eco130I	CCWWGG	1 cut(s)	446
Eco24I	GRGCYC	1 cut(s)	395
Eco57I	CTGAAG	1 cut(s)	393
EcoT14I	CCWWGG	1 cut(s)	446
EcoT22I	ATGCAT	1 cut(s)	21
EcoT38I	GRGCYC	1 cut(s)	395
ErhI	CCWWGG	1 cut(s)	446
FaeI	CATG	1 cut(s)	23
FaiI	YATR	5 cut(s)	17, 21, 132, 315, 411
FatI	CATG	1 cut(s)	19
Fnu4HI	GCNGC	6 cut(s)	6, 162, 165, 210, 237, 381
FriOI	GRGCYC	1 cut(s)	395
Fsp4HI	GCNGC	6 cut(s)	6, 162, 165, 210, 237, 381
FspBI	CTAG	1 cut(s)	189
GluI	GCNGC	6 cut(s)	6, 162, 165, 210, 237, 381
GsuI	CTGGAG	1 cut(s)	78
HaeIII	GGCC	1 cut(s)	256
Hin1II	CATG	1 cut(s)	23
HindIII	AAGCTT	2 cut(s)	11, 281
HinfI	GANTC	2 cut(s)	84, 147
HphI	GGTGA	3 cut(s)	116, 164, 253
Hpy166II	GTNNAC	1 cut(s)	146
Hpy188I	TCNGA	2 cut(s)	199, 405
Hpy188III	TCNNGA	3 cut(s)	88, 388, 418
Hpy8I	GTNNAC	1 cut(s)	146
Hpy99I	CGWCG	1 cut(s)	203
HpyAV	CCTTC	3 cut(s)	74, 209, 368
HpyCH4IV	ACGT	3 cut(s)	42, 201, 309
HpyCH4V	TGCA	3 cut(s)	19, 164, 272
HpyF10VI	GCNNNNNNNGC	4 cut(s)	170, 218, 245, 437
HpyF3I	CTNAG	1 cut(s)	125
HpySE526I	ACGT	3 cut(s)	42, 201, 309
Hsp92II	CATG	1 cut(s)	23
Kzo9I	GATC	2 cut(s)	276, 420
LmnI	GCTCC	1 cut(s)	298
LpnPI	CCDG	8 cut(s)	42, 207, 238, 279, 310, 319, 384, 384
Lsp1109I	GCAGC	4 cut(s)	17, 148, 176, 392
LweI	GCATC	2 cut(s)	111, 259
MaeI	CTAG	1 cut(s)	189
MaeII	ACGT	3 cut(s)	42, 201, 309
MaeIII	GTNAC	2 cut(s)	43, 104
MalI	GATC	2 cut(s)	278, 422
MbiI	CCGCTC	1 cut(s)	239
MboI	GATC	2 cut(s)	276, 420
MboII	GAAGA	2 cut(s)	186, 316
MhlI	GDGCHC	1 cut(s)	395
MluCI	AATT	2 cut(s)	354, 453
MlyI	GAGTC	2 cut(s)	93, 141
MmeI	TCCRAC	2 cut(s)	55, 222
MnlI	CCTC	6 cut(s)	55, 134, 267, 339, 341, 442
Mph1103I	ATGCAT	1 cut(s)	21
MseI	TTAA	1 cut(s)	353
MspA1I	CMGCKG	2 cut(s)	209, 383
MwoI	GCNNNNNNNGC	4 cut(s)	170, 218, 245, 437
NdeII	GATC	2 cut(s)	276, 420
NlaIII	CATG	1 cut(s)	23
NlaIV	GGNNCC	1 cut(s)	329
NmuCI	GTSAC	1 cut(s)	104
NsiI	ATGCAT	1 cut(s)	21
NspI	RCATGY	1 cut(s)	23
PaeI	GCATGC	1 cut(s)	23
PcsI	WCGNNNNNNNCGW	1 cut(s)	39
PflMI	CCANNNNNTGG	1 cut(s)	447
PkrI	GCNGC	6 cut(s)	7, 163, 166, 211, 238, 382
PleI	GAGTC	2 cut(s)	92, 141
PpsI	GAGTC	2 cut(s)	92, 141
PspN4I	GGNNCC	1 cut(s)	329
PstI	CTGCAG	1 cut(s)	166
PvuII	CAGCTG	1 cut(s)	383
RsaI	GTAC	2 cut(s)	32, 312
RsaNI	GTAC	2 cut(s)	31, 311
SaqAI	TTAA	1 cut(s)	353
SatI	GCNGC	6 cut(s)	6, 162, 165, 210, 237, 381
Sau3AI	GATC	2 cut(s)	276, 420
SchI	GAGTC	2 cut(s)	93, 141
SduI	GDGCHC	1 cut(s)	395
SfaNI	GCATC	2 cut(s)	111, 259
SfcI	CTRYAG	1 cut(s)	162
SphI	GCATGC	1 cut(s)	23
Sse9I	AATT	2 cut(s)	354, 453
SsiI	CCGC	3 cut(s)	23, 209, 237
SspMI	CTAG	1 cut(s)	189
StyI	CCWWGG	1 cut(s)	446
TaiI	ACGT	3 cut(s)	45, 204, 312
TasI	AATT	2 cut(s)	354, 453
TauI	GCSGC	2 cut(s)	212, 239
Tru1I	TTAA	1 cut(s)	353
Tru9I	TTAA	1 cut(s)	353
TscAI	CASTG	1 cut(s)	257
TseFI	GTSAC	1 cut(s)	104
TseI	GCWGC	4 cut(s)	5, 161, 164, 380
Tsp45I	GTSAC	1 cut(s)	104
TspRI	CASTG	1 cut(s)	257
Van91I	CCANNNNNTGG	1 cut(s)	447
XceI	RCATGY	1 cut(s)	23
XspI	CTAG	1 cut(s)	189
Zsp2I	ATGCAT	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.