Rw6G023270

Quinone-oxidoreductase homolog, chloroplastic

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Forward (+)
45583276 .. 45585126
1851 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G023270.1

Sequence Viewer

Length: 990 bp
ATGGCGGTAAAGCTTATGCATGCGGTTCAATACAATAGTTATGGTGGAGGACCTTCTGGTTTAAAGCATGTTGAGATTCCGATCCCAACTCCGAAGAAAGATGAGGTTTTGCTGAAAGTGGAAGCAGCTAGTATAAATCCAGTTGATTGGAAACTGCAGAAAGGCGTGGGGCGGCCTTTTTACCCACGCAATTTGCCTCATACACCTGCTTGTGATGTGGCCGGAGAGGTTGTCGAGGTTGGACAAGGAGTTCAGAATTTCAAAGTGGGCGACGAAGTTGTCACAGCTCTAACACTTGCTACTGGAGGTGCATTTGCTGAGTATGCAACTGCTAAAGAGTGTTTCACGGCTACTAGGCCGCCTGAGGTTTCAGCAGCCGAAGCTGCCGGGTTACCTGTTGCTGGTCTCACAGCTCACCAGTGTCTCACTGAAGCCGCAGGAGTCAAGCTGGATGGCACAGGCCCTCAGCAGAACATATTGATTACCGCTGCCTCTGGAGGTGTGGGGCACTATGCAGTCCAACTAGCTAAGCTAGGAAACACCCATGTCACGGCCACTTGTGGAGCTCGTAACATTGATTTCGTCAAGAGCTTGGGGGCTGATGAGGTTCTTGACTACAAGACCCCTGAAGGGGCAGCTCTGAGTAGCCCGTCTGGTCGGAAATATGATGCCGTGATCCACTGTGCAACAGCCATTCCTTGGTCTACTTTTAAGCCGAATTTGAGTCCAAATGGGAAGGTCATAGACATTAGTCCCAGTCTAAGTAACTGGCTCACTATGGCTGTAAACAAACTCACCTTCTCCAAGAAGCAGCTAGTGCAGCTGATGGTGAATCCCAAGGCTGAGAACCTGGATTATCTTGTTAAGTTGGTGAAGGAAGGAAAGCTCAAGACGGTGATTGACTCCAGACATCCTTTGAGCAAGGCTGAAGATGCTTGGGTTAAGAGTATCGATGGCCATGCTACTGGGAAAATCATTGTGGAGCCTTAA

Protein Analysis

329

Amino Acids

34.76

Weight (kDa)

8.16

Isoelectric Point (pI)

33.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 33 - 115 3.1e-17 Alcohol dehydrogenase GroES-like domain
ADH_zinc_N PF00107 167 - 278 7.4e-10 Zinc-binding dehydrogenase
ADH_zinc_N_2 PF13602 198 - 327 1.5e-21 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000313)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G13010
fragaria_vesca FvH4_2g18240 FvH4_2g18280 FvH4_2g18310 FvH4_2g18320 FvH4_2g18330 FvH4_2g18340 FvH4_2g18350
malus_domestica MD05G1166800.v1.1 MD05G1167200.v1.1 MD05G1167300.v1.1 MD05G1167400.v1.1 MD05G1167600.v1.1 MD05G1168000.v1.1 MD05G1168200.v1.1 MD05G1168400.v1.1 MD05G1168600.v1.1 MD05G1168700.v1.1 MD05G1168800.v1.1 MD10G1156900.v1.1 MD10G1157000.v1.1 MD10G1157100.v1.1 MD10G1157200.v1.1
prunus_persica Prupe.8G195100_v2.0.a1 Prupe.8G195100_v2.0.a1 Prupe.8G195300_v2.0.a1 Prupe.8G195600_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G196000_v2.0.a1 Prupe.8G196000_v2.0.a1
pyrus_communis pycom05g15560 pycom05g15600 pycom05g15610 pycom05g15620 pycom05g15630 pycom10g13550 pycom10g13570
rosa_chinensis RchiOBHm_Chr6g0283611 RchiOBHm_Chr6g0283631 RchiOBHm_Chr6g0283641 RchiOBHm_Chr6g0283661 RchiOBHm_Chr6g0283681 RchiOBHm_Chr6g0283691 RchiOBHm_Chr6g0283701 RchiOBHm_Chr6g0283711 RchiOBHm_Chr6g0283721
rosa_laevigata RLG00000012804 RLG00000012807 RLG00000012811
rosa_multiflora Rmu_co8263921.1_g000001 Rmu_sc0001521.1_g000009 Rmu_sc0002906.1_g000002 Rmu_sc0002906.1_g000011 Rmu_sc0002906.1_g000013 Rmu_sc0005719.1_g000016 Rmu_sc0005719.1_g000022 Rmu_sc0029460.1_g000001
rosa_roxburghii Rroxscaffold_7G00185240 Rroxscaffold_7G00185250 Rroxscaffold_7G00185270 Rroxscaffold_7G00185280 Rroxscaffold_7G00185290 Rroxscaffold_7G00185330 Rroxscaffold_7G00185350
rosa_rugosa Rorug06G0156100 Rorug06G0156300 Rorug06G0156400 Rorug06G0156500 Rorug06G0156600 Rorug06G0156700 Rorug06G0156800 Rorug06G0156900 Rorug06G0157000
rosa_samantha Rh6AG267900 Rh6AG268100 Rh6AG268200 Rh6AG268400 Rh6AG268600 Rh6AG268700 Rh6AG268900 Rh6AG269100 Rh6BG270700 Rh6BG270900 Rh6BG271000 Rh6BG271200 Rh6BG271400 Rh6BG271500 Rh6CG270200 Rh6CG270400 Rh6CG270500 Rh6CG270800 Rh6CG270900 Rh6CG271000 Rh6CG271100 Rh6CG271300 Rh6DG263900 Rh6DG264100 Rh6DG264200 Rh6DG264400 Rh6DG264600 Rh6DG264800 Rh6DG265200
rosa_wichuraiana Rw6G023210 Rw6G023220 Rw6G023230 Rw6G023240 Rw6G023250 Rw6G023260 Rw6G023270 Rw6G023280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 214
AasI GACNNNNNNGTC 1 cut(s) 278
Acc36I ACCTGC 1 cut(s) 214
AccB7I CCANNNNNTGG 1 cut(s) 699
AccI GTMKAC 1 cut(s) 704
AciI CCGC 6 cut(s) 5, 23, 172, 359, 435, 486
AclWI GGATC 2 cut(s) 76, 670
AcoI YGGCCR 3 cut(s) 219, 552, 955
AcsI RAATTY 2 cut(s) 256, 718
AcuI CTGAAG 3 cut(s) 450, 648, 948
AfiI CCNNNNNNNGG 5 cut(s) 401, 550, 630, 631, 699
AgsI TTSAA 2 cut(s) 29, 262
AjnI CCWGG 1 cut(s) 849
AloI GAACNNNNNNTCC 2 cut(s) 234, 266
Alw21I GWGCWC 1 cut(s) 568
Alw26I GTCTC 2 cut(s) 410, 428
AlwI GGATC 2 cut(s) 76, 670
AoxI GGCC 6 cut(s) 173, 219, 356, 460, 552, 955
ApeKI GCWGC 7 cut(s) 125, 374, 383, 488, 635, 811, 820
ApoI RAATTY 2 cut(s) 256, 718
AspS9I GGNCC 2 cut(s) 50, 461
AsuC2I CCSGG 1 cut(s) 388
AsuHPI GGTGA 5 cut(s) 407, 787, 841, 883, 907
AvaII GGWCC 1 cut(s) 50
AxyI CCTNAGG 1 cut(s) 363
BaeGI GKGCMC 1 cut(s) 510
BalI TGGCCA 1 cut(s) 957
BanII GRGCYC 1 cut(s) 568
Bbv12I GWGCWC 1 cut(s) 568
BbvCI CCTCAGC 1 cut(s) 465
BbvI GCAGC 7 cut(s) 137, 370, 386, 475, 647, 823, 832
BccI CCATC 3 cut(s) 446, 820, 947
BceAI ACGGC 3 cut(s) 363, 567, 656
BcgI CGANNNNNNTGC 2 cut(s) 941, 975
BciT130I CCWGG 1 cut(s) 851
BcnI CCSGG 1 cut(s) 388
BcoDI GTCTC 2 cut(s) 410, 428
BfaI CTAG 5 cut(s) 129, 354, 524, 533, 815
BfmI CTRYAG 1 cut(s) 155
BfuAI ACCTGC 1 cut(s) 214
BlpI GCTNAGC 1 cut(s) 528
Bme1390I CCNGG 2 cut(s) 388, 851
Bme18I GGWCC 1 cut(s) 50
BmgT120I GGNCC 2 cut(s) 50, 461
BmiI GGNNCC 1 cut(s) 984
BmrFI CCNGG 2 cut(s) 388, 851
BmrI ACTGGG 2 cut(s) 750, 975
BmsI GCATC 2 cut(s) 658, 922
BmuI ACTGGG 2 cut(s) 750, 975
BoxI GACNNNNGTC 1 cut(s) 750
BpmI CTGGAG 3 cut(s) 324, 516, 889
Bpu10I CCTNAGC 1 cut(s) 465
Bpu1102I GCTNAGC 1 cut(s) 528
BpuEI CTTGAG 1 cut(s) 872
BpuMI CCSGG 1 cut(s) 388
Bsa29I ATCGAT 1 cut(s) 951
BsaBI GATNNNNATC 1 cut(s) 80
BsaI GGTCTC 1 cut(s) 410
BsaJI CCNNGG 2 cut(s) 698, 837
BsaXI ACNNNNNCTCC 2 cut(s) 216, 246
Bsc4I CCNNNNNNNGG 5 cut(s) 401, 550, 630, 631, 699
Bse1I ACTGG 6 cut(s) 140, 307, 418, 756, 773, 970
Bse21I CCTNAGG 1 cut(s) 363
Bse8I GATNNNNATC 1 cut(s) 80
BseBI CCWGG 1 cut(s) 851
BseCI ATCGAT 1 cut(s) 951
BseDI CCNNGG 2 cut(s) 698, 837
BseGI GGATG 2 cut(s) 457, 910
BseJI GATNNNNATC 1 cut(s) 80
BseLI CCNNNNNNNGG 5 cut(s) 401, 550, 630, 631, 699
BseMII CTCAG 5 cut(s) 309, 354, 479, 632, 834
BseNI ACTGG 6 cut(s) 140, 307, 418, 756, 773, 970
BseSI GKGCMC 1 cut(s) 510
BseXI GCAGC 7 cut(s) 137, 370, 386, 475, 647, 823, 832
BsgI GTGCAG 1 cut(s) 839
BshFI GGCC 6 cut(s) 175, 221, 358, 462, 554, 957
BshVI ATCGAT 1 cut(s) 951
BsiHKAI GWGCWC 1 cut(s) 568
BsiSI CCGG 2 cut(s) 222, 387
BslFI GGGAC 1 cut(s) 738
BslI CCNNNNNNNGG 5 cut(s) 401, 550, 630, 631, 699
BsmAI GTCTC 2 cut(s) 410, 428
BsmFI GGGAC 1 cut(s) 738
BsnI GGCC 6 cut(s) 175, 221, 358, 462, 554, 957
Bso31I GGTCTC 1 cut(s) 410
Bsp1286I GDGCHC 2 cut(s) 510, 568
Bsp143I GATC 2 cut(s) 81, 675
Bsp1720I GCTNAGC 1 cut(s) 528
BspACI CCGC 6 cut(s) 5, 23, 172, 359, 435, 486
BspANI GGCC 6 cut(s) 175, 221, 358, 462, 554, 957
BspCNI CTCAG 5 cut(s) 310, 355, 478, 633, 835
BspDI ATCGAT 1 cut(s) 951
BspLI GGNNCC 1 cut(s) 984
BspMAI CTGCAG 1 cut(s) 159
BspMI ACCTGC 1 cut(s) 214
BspPI GGATC 2 cut(s) 76, 670
BspTNI GGTCTC 1 cut(s) 410
BsrI ACTGG 6 cut(s) 140, 307, 418, 756, 773, 970
BssECI CCNNGG 2 cut(s) 698, 837
BssMI GATC 2 cut(s) 81, 675
BssT1I CCWWGG 2 cut(s) 698, 837
Bst2UI CCWGG 1 cut(s) 851
Bst4CI ACNGT 2 cut(s) 683, 895
BstAPI GCANNNNNTGC 1 cut(s) 817
BstC8I GCNNGC 1 cut(s) 21
BstDEI CTNAG 7 cut(s) 318, 363, 465, 528, 641, 761, 843
BstEII GGTNACC 1 cut(s) 390
BstF5I GGATG 2 cut(s) 457, 910
BstKTI GATC 2 cut(s) 84, 678
BstMAI GTCTC 2 cut(s) 410, 428
BstMBI GATC 2 cut(s) 81, 675
BstMWI GCNNNNNNNGC 6 cut(s) 323, 380, 383, 817, 820, 932
BstNI CCWGG 1 cut(s) 851
BstNSI RCATGY 2 cut(s) 23, 71
BstPAI GACNNNNGTC 1 cut(s) 750
BstPI GGTNACC 1 cut(s) 390
BstSCI CCNGG 2 cut(s) 386, 849
BstSFI CTRYAG 1 cut(s) 155
BstSLI GKGCMC 1 cut(s) 510
BstV1I GCAGC 7 cut(s) 137, 370, 386, 475, 647, 823, 832
BstXI CCANNNNNNTGG 2 cut(s) 147, 965
Bsu15I ATCGAT 1 cut(s) 951
Bsu36I CCTNAGG 1 cut(s) 363
BsuRI GGCC 6 cut(s) 175, 221, 358, 462, 554, 957
BsuTUI ATCGAT 1 cut(s) 951
BtsCI GGATG 2 cut(s) 457, 910
BtsIMutI CAGTG 3 cut(s) 425, 426, 679
BveI ACCTGC 1 cut(s) 214
Cac8I GCNNGC 1 cut(s) 21
Cfr13I GGNCC 2 cut(s) 50, 461
ClaI ATCGAT 1 cut(s) 951
CspCI CAANNNNNGTGG 2 cut(s) 174, 209
CviAII CATG 4 cut(s) 20, 68, 545, 959
DdeI CTNAG 7 cut(s) 318, 363, 465, 528, 641, 761, 843
DpnI GATC 2 cut(s) 83, 677
DpnII GATC 2 cut(s) 81, 675
DraI TTTAAA 1 cut(s) 63
DrdI GACNNNNNNGTC 1 cut(s) 278
DseDI GACNNNNNNGTC 1 cut(s) 278
EaeI YGGCCR 3 cut(s) 219, 552, 955
Ecl136II GAGCTC 1 cut(s) 566
Eco130I CCWWGG 2 cut(s) 698, 837
Eco24I GRGCYC 1 cut(s) 568
Eco31I GGTCTC 1 cut(s) 410
Eco47I GGWCC 1 cut(s) 50
Eco53kI GAGCTC 1 cut(s) 566
Eco57I CTGAAG 3 cut(s) 450, 648, 948
Eco81I CCTNAGG 1 cut(s) 363
Eco91I GGTNACC 1 cut(s) 390
EcoICRI GAGCTC 1 cut(s) 566
EcoO109I RGGNCCY 2 cut(s) 50, 461
EcoO65I GGTNACC 1 cut(s) 390
EcoRII CCWGG 1 cut(s) 849
EcoT14I CCWWGG 2 cut(s) 698, 837
EcoT22I ATGCAT 1 cut(s) 21
EcoT38I GRGCYC 1 cut(s) 568
ErhI CCWWGG 2 cut(s) 698, 837
FaeI CATG 4 cut(s) 23, 71, 548, 962
FaqI GGGAC 1 cut(s) 738
FatI CATG 4 cut(s) 19, 67, 544, 958
FblI GTMKAC 1 cut(s) 704
FokI GGATG 2 cut(s) 464, 897
FriOI GRGCYC 1 cut(s) 568
FspBI CTAG 5 cut(s) 129, 354, 524, 533, 815
GsuI CTGGAG 3 cut(s) 324, 516, 889
HaeIII GGCC 6 cut(s) 175, 221, 358, 462, 554, 957
HapII CCGG 2 cut(s) 222, 387
Hin1II CATG 4 cut(s) 23, 71, 548, 962
HindIII AAGCTT 1 cut(s) 11
HinfI GANTC 5 cut(s) 76, 441, 724, 832, 902
HpaII CCGG 2 cut(s) 222, 387
HphI GGTGA 5 cut(s) 407, 787, 841, 883, 907
Hpy166II GTNNAC 2 cut(s) 705, 787
Hpy188I TCNGA 5 cut(s) 81, 93, 255, 642, 660
Hpy188III TCNNGA 5 cut(s) 495, 586, 611, 889, 906
Hpy8I GTNNAC 2 cut(s) 705, 787
Hpy99I CGWCG 1 cut(s) 275
HpyAV CCTTC 6 cut(s) 63, 623, 730, 808, 868, 872
HpyCH4III ACNGT 2 cut(s) 683, 895
HpyCH4V TGCA 7 cut(s) 19, 157, 311, 326, 515, 686, 820
HpyF10VI GCNNNNNNNGC 6 cut(s) 323, 380, 383, 817, 820, 932
HpyF3I CTNAG 7 cut(s) 318, 363, 465, 528, 641, 761, 843
Hsp92II CATG 4 cut(s) 23, 71, 548, 962
Kzo9I GATC 2 cut(s) 81, 675
LmnI GCTCC 2 cut(s) 563, 982
Lsp1109I GCAGC 7 cut(s) 137, 370, 386, 475, 647, 823, 832
LweI GCATC 2 cut(s) 658, 922
MaeI CTAG 5 cut(s) 129, 354, 524, 533, 815
MaeIII GTNAC 5 cut(s) 280, 390, 547, 569, 764
MalI GATC 2 cut(s) 83, 677
MboI GATC 2 cut(s) 81, 675
MboII GAAGA 2 cut(s) 106, 941
MhlI GDGCHC 2 cut(s) 510, 568
MlsI TGGCCA 1 cut(s) 957
MluCI AATT 3 cut(s) 190, 256, 718
MluNI TGGCCA 1 cut(s) 957
MlyI GAGTC 3 cut(s) 450, 733, 896
MmeI TCCRAC 3 cut(s) 220, 544, 638
Mox20I TGGCCA 1 cut(s) 957
Mph1103I ATGCAT 1 cut(s) 21
MscI TGGCCA 1 cut(s) 957
MseI TTAA 5 cut(s) 62, 711, 864, 942, 988
Msp20I TGGCCA 1 cut(s) 957
MspA1I CMGCKG 2 cut(s) 488, 823
MspI CCGG 2 cut(s) 222, 387
MspR9I CCNGG 2 cut(s) 388, 851
MvaI CCWGG 1 cut(s) 851
MwoI GCNNNNNNNGC 6 cut(s) 323, 380, 383, 817, 820, 932
NciI CCSGG 1 cut(s) 388
NdeII GATC 2 cut(s) 81, 675
NlaIII CATG 4 cut(s) 23, 71, 548, 962
NlaIV GGNNCC 1 cut(s) 984
NmuCI GTSAC 2 cut(s) 280, 547
NsiI ATGCAT 1 cut(s) 21
NspI RCATGY 2 cut(s) 23, 71
PaeI GCATGC 1 cut(s) 23
PaqCI CACCTGC 1 cut(s) 214
PfeI GAWTC 2 cut(s) 76, 832
PflMI CCANNNNNTGG 1 cut(s) 699
PleI GAGTC 3 cut(s) 449, 732, 896
PpsI GAGTC 3 cut(s) 449, 732, 896
PpuMI RGGWCCY 1 cut(s) 50
PshAI GACNNNNGTC 1 cut(s) 750
Psp124BI GAGCTC 1 cut(s) 568
Psp5II RGGWCCY 1 cut(s) 50
Psp6I CCWGG 1 cut(s) 849
PspEI GGTNACC 1 cut(s) 390
PspGI CCWGG 1 cut(s) 849
PspN4I GGNNCC 1 cut(s) 984
PspPI GGNCC 2 cut(s) 50, 461
PspPPI RGGWCCY 1 cut(s) 50
PstI CTGCAG 1 cut(s) 159
PvuII CAGCTG 1 cut(s) 823
SacI GAGCTC 1 cut(s) 568
SaqAI TTAA 5 cut(s) 62, 711, 864, 942, 988
Sau3AI GATC 2 cut(s) 81, 675
Sau96I GGNCC 2 cut(s) 50, 461
SchI GAGTC 3 cut(s) 450, 733, 896
ScrFI CCNGG 2 cut(s) 388, 851
SduI GDGCHC 2 cut(s) 510, 568
SfaNI GCATC 2 cut(s) 658, 922
SfcI CTRYAG 1 cut(s) 155
SinI GGWCC 1 cut(s) 50
SmlI CTYRAG 1 cut(s) 887
SmoI CTYRAG 1 cut(s) 887
SphI GCATGC 1 cut(s) 23
Sse9I AATT 3 cut(s) 190, 256, 718
SsiI CCGC 6 cut(s) 5, 23, 172, 359, 435, 486
SspMI CTAG 5 cut(s) 129, 354, 524, 533, 815
SstI GAGCTC 1 cut(s) 568
StyD4I CCNGG 2 cut(s) 386, 849
StyI CCWWGG 2 cut(s) 698, 837
TaaI ACNGT 2 cut(s) 683, 895
TaqI TCGA 2 cut(s) 234, 951
TasI AATT 3 cut(s) 190, 256, 718
TauI GCSGC 3 cut(s) 175, 361, 437
TfiI GAWTC 2 cut(s) 76, 832
Tru1I TTAA 5 cut(s) 62, 711, 864, 942, 988
Tru9I TTAA 5 cut(s) 62, 711, 864, 942, 988
TscAI CASTG 3 cut(s) 425, 433, 686
TseFI GTSAC 2 cut(s) 280, 547
TseI GCWGC 7 cut(s) 125, 374, 383, 488, 635, 811, 820
Tsp45I GTSAC 2 cut(s) 280, 547
TspRI CASTG 3 cut(s) 425, 433, 686
Van91I CCANNNNNTGG 1 cut(s) 699
VpaK11BI GGWCC 1 cut(s) 50
XapI RAATTY 2 cut(s) 256, 718
XceI RCATGY 2 cut(s) 23, 71
XmiI GTMKAC 1 cut(s) 704
XspI CTAG 5 cut(s) 129, 354, 524, 533, 815
Zsp2I ATGCAT 1 cut(s) 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.