RLG00000012807

Zinc-binding dehydrogenase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Reverse (-)
22558255 .. 22570172
11918 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012807

Sequence Viewer

Length: 990 bp
ATGTCGAAGAAGCTTATGCATGCGGTTCAGTACGACGGCTATGGTGGAGGAACTTCTGGTTTAAAGCATGTTGAGGTTCCAATCCCAACTCCAATCAAAAATGAGCTTTTGCTGAAAGTGGAAGCAGCTAGTCTAAATCCAGTTGATTGGAAAATTCAGAAAGGCCAGCTGCGGCCTCTTTTCCCATTGAATTTCCCTCTAATACCTCTAACGGACGTATCTGGAGAGATTGTAGAGGTTGGAGGAGGAGTCAGAAAGTTCAAAGTGGGAGACAAAGTAGTTATAATGCTCAACCCTTTTAATGGAGGTGGATTTGCTGAGTTTGCAACTGCTAGTGAGAGTTTGGCGGTTACTAGGCCACCTGAAGTTTCAGCGGCTGAAGCTGCAGGATTACCTGTTGCTGGTCTCACAGCTCACCAGTGTCTCACCCAAGCTGCAGGAGTCAAGCTTGACGGCACTGGCCCACAGAAGAACATATTGGTTACTGCTGCCTCCGGTGGTGTGGGTCAGTATGCAGTCCAACTTGCAAAGCTGGGAAACACCCACGTCACAGCTACATGTGGAGCTCGTAACATTGATTTCGTTAAGAGCTTAGGGGCCGATGAGGTTCTTGACTACAAGACCCCTGAAGGGGCAGCTCTGAATAGCCCTTCTGGTCGGAAGTACGATGCTGTTATCCACTGTGCAACTGGCATTCCTTGGTCCACATTTGAGCCGAATTTGAGTCCAAATGGGAAGGTTATAGACATTACTCCCGGTCCAAGTGCTTTGTTTACTTTCGCTCTAAAGAATCTCACCTTCTCCAAGAAGAAGCTAGTGCCGCTGCTCATGAATGCCAAGGCGGAGAATCTGGATTATCTTGTGAAGTTGGTGAAGGAAGGAAAGCTGAAGACAGTGATTGACTCAAAGTATCCTCTGAGCAAGGCTGAAGATGCTTGGGCTAAGAGTATTGATGGCCATGCTACTGGGAAGATCATTGTGGAGCCTTAA

Protein Analysis

330

Amino Acids

34.69

Weight (kDa)

8.9

Isoelectric Point (pI)

23.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 33 - 118 4.5e-15 Alcohol dehydrogenase GroES-like domain
ADH_zinc_N PF00107 167 - 290 2e-10 Zinc-binding dehydrogenase
ADH_zinc_N_2 PF13602 198 - 327 5.7e-23 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000313)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G13010
fragaria_vesca FvH4_2g18240 FvH4_2g18280 FvH4_2g18310 FvH4_2g18320 FvH4_2g18330 FvH4_2g18340 FvH4_2g18350
malus_domestica MD05G1166800.v1.1 MD05G1167200.v1.1 MD05G1167300.v1.1 MD05G1167400.v1.1 MD05G1167600.v1.1 MD05G1168000.v1.1 MD05G1168200.v1.1 MD05G1168400.v1.1 MD05G1168600.v1.1 MD05G1168700.v1.1 MD05G1168800.v1.1 MD10G1156900.v1.1 MD10G1157000.v1.1 MD10G1157100.v1.1 MD10G1157200.v1.1
prunus_persica Prupe.8G195100_v2.0.a1 Prupe.8G195100_v2.0.a1 Prupe.8G195300_v2.0.a1 Prupe.8G195600_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G196000_v2.0.a1 Prupe.8G196000_v2.0.a1
pyrus_communis pycom05g15560 pycom05g15600 pycom05g15610 pycom05g15620 pycom05g15630 pycom10g13550 pycom10g13570
rosa_chinensis RchiOBHm_Chr6g0283611 RchiOBHm_Chr6g0283631 RchiOBHm_Chr6g0283641 RchiOBHm_Chr6g0283661 RchiOBHm_Chr6g0283681 RchiOBHm_Chr6g0283691 RchiOBHm_Chr6g0283701 RchiOBHm_Chr6g0283711 RchiOBHm_Chr6g0283721
rosa_laevigata RLG00000012804 RLG00000012807 RLG00000012811
rosa_multiflora Rmu_co8263921.1_g000001 Rmu_sc0001521.1_g000009 Rmu_sc0002906.1_g000002 Rmu_sc0002906.1_g000011 Rmu_sc0002906.1_g000013 Rmu_sc0005719.1_g000016 Rmu_sc0005719.1_g000022 Rmu_sc0029460.1_g000001
rosa_roxburghii Rroxscaffold_7G00185240 Rroxscaffold_7G00185250 Rroxscaffold_7G00185270 Rroxscaffold_7G00185280 Rroxscaffold_7G00185290 Rroxscaffold_7G00185330 Rroxscaffold_7G00185350
rosa_rugosa Rorug06G0156100 Rorug06G0156300 Rorug06G0156400 Rorug06G0156500 Rorug06G0156600 Rorug06G0156700 Rorug06G0156800 Rorug06G0156900 Rorug06G0157000
rosa_samantha Rh6AG267900 Rh6AG268100 Rh6AG268200 Rh6AG268400 Rh6AG268600 Rh6AG268700 Rh6AG268900 Rh6AG269100 Rh6BG270700 Rh6BG270900 Rh6BG271000 Rh6BG271200 Rh6BG271400 Rh6BG271500 Rh6CG270200 Rh6CG270400 Rh6CG270500 Rh6CG270800 Rh6CG270900 Rh6CG271000 Rh6CG271100 Rh6CG271300 Rh6DG263900 Rh6DG264100 Rh6DG264200 Rh6DG264400 Rh6DG264600 Rh6DG264800 Rh6DG265200
rosa_wichuraiana Rw6G023210 Rw6G023220 Rw6G023230 Rw6G023240 Rw6G023250 Rw6G023260 Rw6G023270 Rw6G023280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 284
AciI CCGC 6 cut(s) 23, 172, 347, 374, 821, 842
AcoI YGGCCR 1 cut(s) 955
AcsI RAATTY 3 cut(s) 153, 190, 718
AcuI CTGAAG 5 cut(s) 384, 399, 648, 908, 948
AfaI GTAC 2 cut(s) 32, 665
AfiI CCNNNNNNNGG 4 cut(s) 302, 401, 630, 631
AflIII ACRYGT 1 cut(s) 557
AgsI TTSAA 2 cut(s) 190, 262
AjiI CACGTC 1 cut(s) 547
AjuI GAANNNNNNNTTGG 2 cut(s) 461, 493
Alw21I GWGCWC 1 cut(s) 568
Alw26I GTCTC 3 cut(s) 264, 410, 428
AlwNI CAGNNNCTG 1 cut(s) 377
AoxI GGCC 6 cut(s) 163, 173, 356, 460, 597, 955
ApeKI GCWGC 7 cut(s) 125, 169, 383, 434, 488, 635, 823
ApoI RAATTY 3 cut(s) 153, 190, 718
AspS9I GGNCC 4 cut(s) 461, 597, 702, 758
AsuC2I CCSGG 1 cut(s) 756
AsuHPI GGTGA 4 cut(s) 407, 418, 787, 883
AvaII GGWCC 2 cut(s) 702, 758
BaeI ACNNNNGTAYC 2 cut(s) 201, 234
BalI TGGCCA 1 cut(s) 957
BanII GRGCYC 1 cut(s) 568
BbsI GAAGAC 1 cut(s) 896
Bbv12I GWGCWC 1 cut(s) 568
BbvI GCAGC 7 cut(s) 137, 156, 370, 421, 475, 647, 810
BccI CCATC 1 cut(s) 947
BceAI ACGGC 2 cut(s) 52, 469
BciVI GTATCC 1 cut(s) 921
BcnI CCSGG 1 cut(s) 756
BcoDI GTCTC 3 cut(s) 264, 410, 428
BfaI CTAG 4 cut(s) 129, 333, 354, 815
BfmI CTRYAG 2 cut(s) 384, 435
BfuI GTATCC 1 cut(s) 921
Bme1390I CCNGG 1 cut(s) 756
Bme18I GGWCC 2 cut(s) 702, 758
BmgBI CACGTC 1 cut(s) 547
BmgT120I GGNCC 4 cut(s) 461, 597, 702, 758
BmiI GGNNCC 3 cut(s) 78, 598, 984
BmrFI CCNGG 1 cut(s) 756
BmrI ACTGGG 1 cut(s) 975
BmsI GCATC 2 cut(s) 658, 922
BmuI ACTGGG 1 cut(s) 975
BpiI GAAGAC 1 cut(s) 896
BpmI CTGGAG 1 cut(s) 243
Bpu10I CCTNAGC 1 cut(s) 592
BpuMI CCSGG 1 cut(s) 756
BsaI GGTCTC 1 cut(s) 410
BsaJI CCNNGG 2 cut(s) 698, 837
BsaWI WCCGGW 1 cut(s) 494
BsaXI ACNNNNNCTCC 6 cut(s) 216, 234, 246, 261, 264, 291
Bsc4I CCNNNNNNNGG 4 cut(s) 302, 401, 630, 631
Bse1I ACTGG 5 cut(s) 140, 418, 463, 694, 970
BseDI CCNNGG 2 cut(s) 698, 837
BseLI CCNNNNNNNGG 4 cut(s) 302, 401, 630, 631
BseMII CTCAG 2 cut(s) 309, 908
BseNI ACTGG 5 cut(s) 140, 418, 463, 694, 970
BseRI GAGGAG 2 cut(s) 258, 261
BseXI GCAGC 7 cut(s) 137, 156, 370, 421, 475, 647, 810
BseYI CCCAGC 1 cut(s) 532
BshFI GGCC 6 cut(s) 165, 175, 358, 462, 599, 957
BsiHKAI GWGCWC 1 cut(s) 568
BsiSI CCGG 2 cut(s) 495, 756
BslI CCNNNNNNNGG 4 cut(s) 302, 401, 630, 631
BsmAI GTCTC 3 cut(s) 264, 410, 428
BsmI GAATGC 2 cut(s) 693, 838
BsnI GGCC 6 cut(s) 165, 175, 358, 462, 599, 957
Bso31I GGTCTC 1 cut(s) 410
Bsp1286I GDGCHC 1 cut(s) 568
Bsp143I GATC 1 cut(s) 972
BspACI CCGC 6 cut(s) 23, 172, 347, 374, 821, 842
BspANI GGCC 6 cut(s) 165, 175, 358, 462, 599, 957
BspCNI CTCAG 2 cut(s) 310, 909
BspHI TCATGA 1 cut(s) 828
BspLI GGNNCC 3 cut(s) 78, 598, 984
BspMAI CTGCAG 2 cut(s) 388, 439
BspTNI GGTCTC 1 cut(s) 410
BsrI ACTGG 5 cut(s) 140, 418, 463, 694, 970
BssECI CCNNGG 2 cut(s) 698, 837
BssMI GATC 1 cut(s) 972
BssT1I CCWWGG 2 cut(s) 698, 837
Bst4CI ACNGT 2 cut(s) 683, 895
BstC8I GCNNGC 2 cut(s) 21, 167
BstDEI CTNAG 4 cut(s) 318, 592, 917, 942
BstKTI GATC 1 cut(s) 975
BstMAI GTCTC 3 cut(s) 264, 410, 428
BstMBI GATC 1 cut(s) 972
BstMWI GCNNNNNNNGC 5 cut(s) 323, 380, 383, 820, 932
BstNSI RCATGY 3 cut(s) 23, 71, 561
BstSCI CCNGG 1 cut(s) 754
BstSFI CTRYAG 2 cut(s) 384, 435
BstV1I GCAGC 7 cut(s) 137, 156, 370, 421, 475, 647, 810
BstV2I GAAGAC 1 cut(s) 896
BstXI CCANNNNNNTGG 2 cut(s) 147, 965
BsuI GTATCC 1 cut(s) 921
BsuRI GGCC 6 cut(s) 165, 175, 358, 462, 599, 957
BtrI CACGTC 1 cut(s) 547
BtsIMutI CAGTG 4 cut(s) 425, 456, 679, 900
Cac8I GCNNGC 2 cut(s) 21, 167
CaiI CAGNNNCTG 1 cut(s) 377
CciI TCATGA 1 cut(s) 828
Cfr13I GGNCC 4 cut(s) 461, 597, 702, 758
Csp6I GTAC 2 cut(s) 31, 664
CviAII CATG 5 cut(s) 20, 68, 558, 829, 959
CviQI GTAC 2 cut(s) 31, 664
DdeI CTNAG 4 cut(s) 318, 592, 917, 942
DpnI GATC 1 cut(s) 974
DpnII GATC 1 cut(s) 972
DraI TTTAAA 1 cut(s) 63
EaeI YGGCCR 1 cut(s) 955
EciI GGCGGA 1 cut(s) 857
Ecl136II GAGCTC 1 cut(s) 566
Eco130I CCWWGG 2 cut(s) 698, 837
Eco24I GRGCYC 1 cut(s) 568
Eco31I GGTCTC 1 cut(s) 410
Eco47I GGWCC 2 cut(s) 702, 758
Eco53kI GAGCTC 1 cut(s) 566
Eco57I CTGAAG 5 cut(s) 384, 399, 648, 908, 948
EcoICRI GAGCTC 1 cut(s) 566
EcoT14I CCWWGG 2 cut(s) 698, 837
EcoT22I ATGCAT 1 cut(s) 21
EcoT38I GRGCYC 1 cut(s) 568
ErhI CCWWGG 2 cut(s) 698, 837
FaeI CATG 5 cut(s) 23, 71, 561, 832, 962
FatI CATG 5 cut(s) 19, 67, 557, 828, 958
FriOI GRGCYC 1 cut(s) 568
FspBI CTAG 4 cut(s) 129, 333, 354, 815
GsaI CCCAGC 1 cut(s) 536
GsuI CTGGAG 1 cut(s) 243
HaeIII GGCC 6 cut(s) 165, 175, 358, 462, 599, 957
HapII CCGG 2 cut(s) 495, 756
Hin1II CATG 5 cut(s) 23, 71, 561, 832, 962
HindIII AAGCTT 2 cut(s) 11, 446
HinfI GANTC 6 cut(s) 249, 441, 724, 790, 847, 902
HpaII CCGG 2 cut(s) 495, 756
HphI GGTGA 4 cut(s) 407, 418, 787, 883
Hpy166II GTNNAC 2 cut(s) 705, 774
Hpy188I TCNGA 5 cut(s) 159, 254, 642, 660, 918
Hpy188III TCNNGA 4 cut(s) 222, 611, 829, 851
Hpy8I GTNNAC 2 cut(s) 705, 774
Hpy99I CGWCG 1 cut(s) 38
HpyAV CCTTC 6 cut(s) 623, 660, 730, 808, 868, 872
HpyCH4III ACNGT 2 cut(s) 683, 895
HpyCH4IV ACGT 2 cut(s) 216, 546
HpyCH4V TGCA 7 cut(s) 19, 326, 386, 437, 515, 527, 686
HpyF10VI GCNNNNNNNGC 5 cut(s) 323, 380, 383, 820, 932
HpyF3I CTNAG 4 cut(s) 318, 592, 917, 942
HpySE526I ACGT 2 cut(s) 216, 546
Hsp92II CATG 5 cut(s) 23, 71, 561, 832, 962
Kzo9I GATC 1 cut(s) 972
LmnI GCTCC 2 cut(s) 563, 982
Lsp1109I GCAGC 7 cut(s) 137, 156, 370, 421, 475, 647, 810
LweI GCATC 2 cut(s) 658, 922
MaeI CTAG 4 cut(s) 129, 333, 354, 815
MaeII ACGT 2 cut(s) 216, 546
MaeIII GTNAC 4 cut(s) 349, 481, 547, 569
MalI GATC 1 cut(s) 974
MboI GATC 1 cut(s) 972
MboII GAAGA 6 cut(s) 19, 481, 820, 901, 941, 982
MhlI GDGCHC 1 cut(s) 568
MlsI TGGCCA 1 cut(s) 957
MluCI AATT 3 cut(s) 153, 190, 718
MluNI TGGCCA 1 cut(s) 957
MlyI GAGTC 4 cut(s) 258, 450, 733, 896
MmeI TCCRAC 3 cut(s) 220, 544, 638
Mox20I TGGCCA 1 cut(s) 957
Mph1103I ATGCAT 1 cut(s) 21
MscI TGGCCA 1 cut(s) 957
MseI TTAA 4 cut(s) 62, 300, 585, 988
Msp20I TGGCCA 1 cut(s) 957
MspA1I CMGCKG 3 cut(s) 169, 374, 823
MspI CCGG 2 cut(s) 495, 756
MspR9I CCNGG 1 cut(s) 756
Mva1269I GAATGC 2 cut(s) 693, 838
MwoI GCNNNNNNNGC 5 cut(s) 323, 380, 383, 820, 932
NciI CCSGG 1 cut(s) 756
NdeII GATC 1 cut(s) 972
NlaIII CATG 5 cut(s) 23, 71, 561, 832, 962
NlaIV GGNNCC 3 cut(s) 78, 598, 984
NmuCI GTSAC 1 cut(s) 547
NsiI ATGCAT 1 cut(s) 21
NspI RCATGY 3 cut(s) 23, 71, 561
PaeI GCATGC 1 cut(s) 23
PagI TCATGA 1 cut(s) 828
PciI ACATGT 1 cut(s) 557
PctI GAATGC 2 cut(s) 693, 838
PfeI GAWTC 2 cut(s) 790, 847
PleI GAGTC 4 cut(s) 257, 449, 732, 896
PpsI GAGTC 4 cut(s) 257, 449, 732, 896
PscI ACATGT 1 cut(s) 557
PsiI TTATAA 1 cut(s) 284
Psp124BI GAGCTC 1 cut(s) 568
PspFI CCCAGC 1 cut(s) 532
PspN4I GGNNCC 3 cut(s) 78, 598, 984
PspPI GGNCC 4 cut(s) 461, 597, 702, 758
PstI CTGCAG 2 cut(s) 388, 439
PstNI CAGNNNCTG 1 cut(s) 377
PvuII CAGCTG 1 cut(s) 169
RsaI GTAC 2 cut(s) 32, 665
RsaNI GTAC 2 cut(s) 31, 664
SacI GAGCTC 1 cut(s) 568
SaqAI TTAA 4 cut(s) 62, 300, 585, 988
Sau3AI GATC 1 cut(s) 972
Sau96I GGNCC 4 cut(s) 461, 597, 702, 758
SchI GAGTC 4 cut(s) 258, 450, 733, 896
ScrFI CCNGG 1 cut(s) 756
SduI GDGCHC 1 cut(s) 568
SfaNI GCATC 2 cut(s) 658, 922
SfcI CTRYAG 2 cut(s) 384, 435
SinI GGWCC 2 cut(s) 702, 758
SphI GCATGC 1 cut(s) 23
Sse9I AATT 3 cut(s) 153, 190, 718
SsiI CCGC 6 cut(s) 23, 172, 347, 374, 821, 842
SspMI CTAG 4 cut(s) 129, 333, 354, 815
SstI GAGCTC 1 cut(s) 568
StyD4I CCNGG 1 cut(s) 754
StyI CCWWGG 2 cut(s) 698, 837
TaaI ACNGT 2 cut(s) 683, 895
TaiI ACGT 2 cut(s) 219, 549
TaqI TCGA 1 cut(s) 5
TasI AATT 3 cut(s) 153, 190, 718
TauI GCSGC 3 cut(s) 175, 377, 823
TfiI GAWTC 2 cut(s) 790, 847
Tru1I TTAA 4 cut(s) 62, 300, 585, 988
Tru9I TTAA 4 cut(s) 62, 300, 585, 988
TscAI CASTG 4 cut(s) 425, 463, 686, 900
TseFI GTSAC 1 cut(s) 547
TseI GCWGC 7 cut(s) 125, 169, 383, 434, 488, 635, 823
Tsp45I GTSAC 1 cut(s) 547
TspDTI ATGAA 1 cut(s) 845
TspGWI ACGGA 1 cut(s) 227
TspRI CASTG 4 cut(s) 425, 463, 686, 900
VpaK11BI GGWCC 2 cut(s) 702, 758
XapI RAATTY 3 cut(s) 153, 190, 718
XceI RCATGY 3 cut(s) 23, 71, 561
XcmI CCANNNNNNNNNTGG 1 cut(s) 686
XspI CTAG 4 cut(s) 129, 333, 354, 815
Zsp2I ATGCAT 1 cut(s) 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.