Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0000313

Physical Location & Seq

Genomic Coordinates Forward (+)

29715730 .. 29716365

Gene Structure 636 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1167200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGCGGACCGGCTCTGTTAGGCAAACAGACAGACAGGTAGGCTCTGCAACGCGAACAGACAGACAGGCAGGCTCCGCAATGCGGACAGACAGACAGACAGGCAGGCAGGCTCTCACCAAGGATGCAGGGTTCAAGCTTGATAGAACCGGTGAGCTGAAGAACATACTTATCACTGGGGCTGCTGGCGGCGTTGGTCTCTATGCAGTTCAACTACCAAAGCTGGGAAACACTCATCTAACGGCTACTTGTGGAGCAAGAAACATTGAATTGGTCAAGAGCTTAGGGGCAGATGAGGTTCTTGACTACAAGACCCCCGAGGAGATAGCCCTAAAGAGCCCGTCTGGTCGGAAATATGATTACGTGATCCACAGTGCCTCACAAGCAATTCCTTGGTCAGTTTTTGAGGCCAACCTGAGTGCAAGAGGGAAGGTAATAGACCTTATTATTGGTGCAAGCAATCTGTTTACTTTTGTTCTGAAGAAAATCACCTTCTCCAAGAAGAAGCTGGCGCTACTGATTATAAATCCCAAGGCTGAGAACCTAGATTGTCTTGTGAAGTTGGTGAAGGAAGGAAAACTCAAGACGGTGATCGACTCGACGCATCCTCTGAGCAAGGCTGAAGAGGCTTGGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N_2

Protein Analysis

212

Amino Acids

22.88

Weight (kDa)

9.72

Isoelectric Point (pI)

22.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_zinc_N	PF00107	63 - 145	8.6e-08	Zinc-binding dehydrogenase
ADH_zinc_N_2	PF13602	94 - 211	1.7e-15	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13010
fragaria_vesca	FvH4_2g18240 FvH4_2g18280 FvH4_2g18310 FvH4_2g18320 FvH4_2g18330 FvH4_2g18340 FvH4_2g18350
malus_domestica	MD05G1166800.v1.1 MD05G1167200.v1.1 MD05G1167300.v1.1 MD05G1167400.v1.1 MD05G1167600.v1.1 MD05G1168000.v1.1 MD05G1168200.v1.1 MD05G1168400.v1.1 MD05G1168600.v1.1 MD05G1168700.v1.1 MD05G1168800.v1.1 MD10G1156900.v1.1 MD10G1157000.v1.1 MD10G1157100.v1.1 MD10G1157200.v1.1
prunus_persica	Prupe.8G195100_v2.0.a1 Prupe.8G195100_v2.0.a1 Prupe.8G195300_v2.0.a1 Prupe.8G195600_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G196000_v2.0.a1 Prupe.8G196000_v2.0.a1
pyrus_communis	pycom05g15560 pycom05g15600 pycom05g15610 pycom05g15620 pycom05g15630 pycom10g13550 pycom10g13570
rosa_chinensis	RchiOBHm_Chr6g0283611 RchiOBHm_Chr6g0283631 RchiOBHm_Chr6g0283641 RchiOBHm_Chr6g0283661 RchiOBHm_Chr6g0283681 RchiOBHm_Chr6g0283691 RchiOBHm_Chr6g0283701 RchiOBHm_Chr6g0283711 RchiOBHm_Chr6g0283721
rosa_laevigata	RLG00000012804 RLG00000012807 RLG00000012811
rosa_multiflora	Rmu_co8263921.1_g000001 Rmu_sc0001521.1_g000009 Rmu_sc0002906.1_g000002 Rmu_sc0002906.1_g000011 Rmu_sc0002906.1_g000013 Rmu_sc0005719.1_g000016 Rmu_sc0005719.1_g000022 Rmu_sc0029460.1_g000001
rosa_roxburghii	Rroxscaffold_7G00185240 Rroxscaffold_7G00185250 Rroxscaffold_7G00185270 Rroxscaffold_7G00185280 Rroxscaffold_7G00185290 Rroxscaffold_7G00185330 Rroxscaffold_7G00185350
rosa_rugosa	Rorug06G0156100 Rorug06G0156300 Rorug06G0156400 Rorug06G0156500 Rorug06G0156600 Rorug06G0156700 Rorug06G0156800 Rorug06G0156900 Rorug06G0157000
rosa_samantha	Rh6AG267900 Rh6AG268100 Rh6AG268200 Rh6AG268400 Rh6AG268600 Rh6AG268700 Rh6AG268900 Rh6AG269100 Rh6BG270700 Rh6BG270900 Rh6BG271000 Rh6BG271200 Rh6BG271400 Rh6BG271500 Rh6CG270200 Rh6CG270400 Rh6CG270500 Rh6CG270800 Rh6CG270900 Rh6CG271000 Rh6CG271100 Rh6CG271300 Rh6DG263900 Rh6DG264100 Rh6DG264200 Rh6DG264400 Rh6DG264600 Rh6DG264800 Rh6DG265200
rosa_wichuraiana	Rw6G023210 Rw6G023220 Rw6G023230 Rw6G023240 Rw6G023250 Rw6G023260 Rw6G023270 Rw6G023280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	521
AccII	CGCG	1 cut(s)	52
AciI	CCGC	4 cut(s)	4, 75, 82, 186
AclWI	GGATC	1 cut(s)	358
AcuI	CTGAAG	2 cut(s)	176, 497
AfiI	CCNNNNNNNGG	2 cut(s)	81, 221
AgeI	ACCGGT	1 cut(s)	146
AgsI	TTSAA	3 cut(s)	133, 209, 266
AloI	GAACNNNNNNTCC	2 cut(s)	113, 145
AluBI	AGCT	5 cut(s)	136, 154, 220, 279, 505
AluI	AGCT	5 cut(s)	136, 154, 220, 279, 505
Alw26I	GTCTC	1 cut(s)	200
AlwI	GGATC	1 cut(s)	358
Ama87I	CYCGRG	1 cut(s)	314
AoxI	GGCC	1 cut(s)	405
ApeKI	GCWGC	1 cut(s)	179
AsiGI	ACCGGT	1 cut(s)	146
AspLEI	GCGC	1 cut(s)	511
AspS9I	GGNCC	1 cut(s)	6
AsuHPI	GGTGA	5 cut(s)	106, 161, 478, 574, 598
AvaI	CYCGRG	1 cut(s)	314
AvaII	GGWCC	1 cut(s)	6
BanII	GRGCYC	1 cut(s)	338
BbvI	GCAGC	1 cut(s)	166
BceAI	ACGGC	1 cut(s)	255
BcoDI	GTCTC	1 cut(s)	200
BfaI	CTAG	1 cut(s)	542
BfoI	RGCGCY	1 cut(s)	512
BisI	GCNGC	2 cut(s)	180, 187
BlsI	GCNGC	2 cut(s)	181, 188
Bme18I	GGWCC	1 cut(s)	6
BmeT110I	CYCGRG	1 cut(s)	314
BmgT120I	GGNCC	1 cut(s)	6
BmiI	GGNNCC	1 cut(s)	73
BmrI	ACTGGG	1 cut(s)	183
BmsI	GCATC	2 cut(s)	112, 610
BmuI	ACTGGG	1 cut(s)	183
Bpu10I	CCTNAGC	1 cut(s)	280
BpuEI	CTTGAG	1 cut(s)	563
BsaAI	YACGTR	1 cut(s)	361
BsaI	GGTCTC	1 cut(s)	200
BsaJI	CCNNGG	4 cut(s)	117, 315, 389, 528
BsaWI	WCCGGW	1 cut(s)	146
Bsc4I	CCNNNNNNNGG	2 cut(s)	81, 221
Bse118I	RCCGGY	2 cut(s)	8, 146
Bse1I	ACTGG	1 cut(s)	178
Bse3DI	GCAATG	1 cut(s)	84
BseDI	CCNNGG	4 cut(s)	117, 315, 389, 528
BseGI	GGATG	2 cut(s)	127, 601
BseLI	CCNNNNNNNGG	2 cut(s)	81, 221
BseMI	GCAATG	1 cut(s)	84
BseMII	CTCAG	3 cut(s)	404, 525, 599
BseNI	ACTGG	1 cut(s)	178
BseRI	GAGGAG	1 cut(s)	332
BseXI	GCAGC	1 cut(s)	166
BseYI	CCCAGC	1 cut(s)	220
Bsh1236I	CGCG	1 cut(s)	52
BshFI	GGCC	1 cut(s)	407
BshTI	ACCGGT	1 cut(s)	146
BsiHKCI	CYCGRG	1 cut(s)	314
BsiSI	CCGG	2 cut(s)	9, 147
BslI	CCNNNNNNNGG	2 cut(s)	81, 221
BsmAI	GTCTC	1 cut(s)	200
BsnI	GGCC	1 cut(s)	407
Bso31I	GGTCTC	1 cut(s)	200
BsoBI	CYCGRG	1 cut(s)	314
Bsp1286I	GDGCHC	1 cut(s)	338
Bsp143I	GATC	2 cut(s)	363, 588
BspACI	CCGC	4 cut(s)	4, 75, 82, 186
BspANI	GGCC	1 cut(s)	407
BspCNI	CTCAG	3 cut(s)	405, 526, 600
BspFNI	CGCG	1 cut(s)	52
BspLI	GGNNCC	1 cut(s)	73
BspPI	GGATC	1 cut(s)	358
BspTNI	GGTCTC	1 cut(s)	200
BsrDI	GCAATG	1 cut(s)	84
BsrFI	RCCGGY	2 cut(s)	8, 146
BsrI	ACTGG	1 cut(s)	178
BssAI	RCCGGY	2 cut(s)	8, 146
BssECI	CCNNGG	4 cut(s)	117, 315, 389, 528
BssMI	GATC	2 cut(s)	363, 588
BssT1I	CCWWGG	3 cut(s)	117, 389, 528
Bst4CI	ACNGT	2 cut(s)	371, 586
Bst6I	CTCTTC	1 cut(s)	615
BstBAI	YACGTR	1 cut(s)	361
BstC8I	GCNNGC	6 cut(s)	70, 104, 108, 184, 454, 507
BstDEI	CTNAG	5 cut(s)	280, 413, 534, 608, 633
BstF5I	GGATG	2 cut(s)	127, 601
BstFNI	CGCG	1 cut(s)	52
BstH2I	RGCGCY	1 cut(s)	512
BstHHI	GCGC	1 cut(s)	511
BstKTI	GATC	2 cut(s)	366, 591
BstMAI	GTCTC	1 cut(s)	200
BstMBI	GATC	2 cut(s)	363, 588
BstMWI	GCNNNNNNNGC	3 cut(s)	74, 380, 623
BstUI	CGCG	1 cut(s)	52
BstV1I	GCAGC	1 cut(s)	166
BsuRI	GGCC	1 cut(s)	407
BtsCI	GGATG	2 cut(s)	127, 601
BtsIMutI	CAGTG	2 cut(s)	171, 376
Cac8I	GCNNGC	6 cut(s)	70, 104, 108, 184, 454, 507
CfoI	GCGC	1 cut(s)	511
Cfr10I	RCCGGY	2 cut(s)	8, 146
Cfr13I	GGNCC	1 cut(s)	6
CpoI	CGGWCCG	1 cut(s)	6
CseI	GACGC	1 cut(s)	607
CspAI	ACCGGT	1 cut(s)	146
CspI	CGGWCCG	1 cut(s)	6
DdeI	CTNAG	5 cut(s)	280, 413, 534, 608, 633
DpnI	GATC	2 cut(s)	365, 590
DpnII	GATC	2 cut(s)	363, 588
Eam1104I	CTCTTC	1 cut(s)	615
EarI	CTCTTC	1 cut(s)	615
Eco130I	CCWWGG	3 cut(s)	117, 389, 528
Eco24I	GRGCYC	1 cut(s)	338
Eco31I	GGTCTC	1 cut(s)	200
Eco47I	GGWCC	1 cut(s)	6
Eco57I	CTGAAG	2 cut(s)	176, 497
Eco88I	CYCGRG	1 cut(s)	314
EcoT14I	CCWWGG	3 cut(s)	117, 389, 528
EcoT38I	GRGCYC	1 cut(s)	338
ErhI	CCWWGG	3 cut(s)	117, 389, 528
FaiI	YATR	4 cut(s)	164, 201, 354, 521
Fnu4HI	GCNGC	2 cut(s)	180, 187
FokI	GGATG	2 cut(s)	134, 588
FriOI	GRGCYC	1 cut(s)	338
Fsp4HI	GCNGC	2 cut(s)	180, 187
FspBI	CTAG	1 cut(s)	542
GlaI	GCGC	1 cut(s)	510
GluI	GCNGC	2 cut(s)	180, 187
GsaI	CCCAGC	1 cut(s)	224
HaeII	RGCGCY	1 cut(s)	512
HaeIII	GGCC	1 cut(s)	407
HapII	CCGG	2 cut(s)	9, 147
HgaI	GACGC	1 cut(s)	607
HhaI	GCGC	1 cut(s)	511
Hin6I	GCGC	1 cut(s)	509
HinP1I	GCGC	1 cut(s)	509
HindIII	AAGCTT	1 cut(s)	134
HinfI	GANTC	1 cut(s)	593
HpaII	CCGG	2 cut(s)	9, 147
HphI	GGTGA	5 cut(s)	106, 161, 478, 574, 598
Hpy166II	GTNNAC	1 cut(s)	465
Hpy188I	TCNGA	3 cut(s)	348, 477, 609
Hpy188III	TCNNGA	3 cut(s)	274, 299, 580
Hpy8I	GTNNAC	1 cut(s)	465
Hpy99I	CGWCG	1 cut(s)	601
HpyAV	CCTTC	4 cut(s)	421, 499, 559, 563
HpyCH4III	ACNGT	2 cut(s)	371, 586
HpyCH4IV	ACGT	1 cut(s)	360
HpyCH4V	TGCA	5 cut(s)	47, 125, 203, 419, 452
HpyF10VI	GCNNNNNNNGC	3 cut(s)	74, 380, 623
HpyF3I	CTNAG	5 cut(s)	280, 413, 534, 608, 633
HpySE526I	ACGT	1 cut(s)	360
HspAI	GCGC	1 cut(s)	509
Kzo9I	GATC	2 cut(s)	363, 588
LmnI	GCTCC	2 cut(s)	77, 251
Lsp1109I	GCAGC	1 cut(s)	166
LweI	GCATC	2 cut(s)	112, 610
MaeI	CTAG	1 cut(s)	542
MaeII	ACGT	1 cut(s)	360
MalI	GATC	2 cut(s)	365, 590
MboI	GATC	2 cut(s)	363, 588
MboII	GAAGA	4 cut(s)	169, 490, 511, 632
MhlI	GDGCHC	1 cut(s)	338
MluCI	AATT	2 cut(s)	266, 384
MlyI	GAGTC	1 cut(s)	587
MmeI	TCCRAC	1 cut(s)	326
MnlI	CCTC	7 cut(s)	286, 310, 385, 397, 416, 615, 616
MspI	CCGG	2 cut(s)	9, 147
MvnI	CGCG	1 cut(s)	52
MwoI	GCNNNNNNNGC	3 cut(s)	74, 380, 623
NdeII	GATC	2 cut(s)	363, 588
NlaIV	GGNNCC	1 cut(s)	73
PinAI	ACCGGT	1 cut(s)	146
PkrI	GCNGC	2 cut(s)	181, 188
PleI	GAGTC	1 cut(s)	587
PpsI	GAGTC	1 cut(s)	587
Ppu21I	YACGTR	1 cut(s)	361
PsiI	TTATAA	1 cut(s)	521
PspFI	CCCAGC	1 cut(s)	220
PspN4I	GGNNCC	1 cut(s)	73
PspPI	GGNCC	1 cut(s)	6
Rsr2I	CGGWCCG	1 cut(s)	6
RsrII	CGGWCCG	1 cut(s)	6
SatI	GCNGC	2 cut(s)	180, 187
Sau3AI	GATC	2 cut(s)	363, 588
Sau96I	GGNCC	1 cut(s)	6
SchI	GAGTC	1 cut(s)	587
SduI	GDGCHC	1 cut(s)	338
SfaNI	GCATC	2 cut(s)	112, 610
SinI	GGWCC	1 cut(s)	6
SmlI	CTYRAG	1 cut(s)	578
SmoI	CTYRAG	1 cut(s)	578
Sse9I	AATT	2 cut(s)	266, 384
SsiI	CCGC	4 cut(s)	4, 75, 82, 186
SspMI	CTAG	1 cut(s)	542
StyI	CCWWGG	3 cut(s)	117, 389, 528
TaaI	ACNGT	2 cut(s)	371, 586
TaiI	ACGT	1 cut(s)	363
TaqI	TCGA	2 cut(s)	591, 596
TasI	AATT	2 cut(s)	266, 384
TauI	GCSGC	1 cut(s)	189
TscAI	CASTG	2 cut(s)	178, 376
TseI	GCWGC	1 cut(s)	179
TspRI	CASTG	2 cut(s)	178, 376
VpaK11BI	GGWCC	1 cut(s)	6
XcmI	CCANNNNNNNNNTGG	1 cut(s)	502
XspI	CTAG	1 cut(s)	542

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.