pycom05g15600

Quinone-oxidoreductase homolog, chloroplastic

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Reverse (-)
19125652 .. 19128863
3212 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g15600.2

Sequence Viewer

Length: 1134 bp
ATGCAGGGGTCAAGCTCGACGGAAGTGGCCAGCAAAAGAACATTTTTATTACTGCTGCATCAGATGGTGTGGATACTGGCAGTCCAACTAGCAAAGCTCGGAAACACCAGATGCTTACGGACAGATGAGGTTCTTGATTACAAGACCCCAGAAGGAGCAGCTCTGAATAGCCCATCTGGTCCGAAATATGGTGCTGTGGTCCACTCGGGAAGGTCAAGTGCCTTCGTTACTTTTGCTCTGAAGAAACTGACCTTCTCAACGAAGCTGCTGGTGCCACTGCCCATGAATTTCAAGACTGAGAACTTGGAGTATCTAGTTTCGTTGGTCAAGGAAGGAAAGCTCAAGACAGTGATCGACTCGACACATCTTCTGAGCAAGGCTGAAGATGCTTGGGCTAGGATTCCGACTAGGGTTTGCATGGCAGGCATGGCGTCGAAGCGTATGCATGCGGTGCAGTACGTCGGCTATGGTGGAGGAGCTTCTGGTTTACAGCATGTAGAGGTTCCAATACCCACTCCGAAGAAAGGCGAGGTTTTGCTGAAATTGGAAGCAGCTAGTATAAACCCACTGGATTGGAAAATTCAGAAAGGCGTGGCACGACCTTTTTTGCCCAAAAAATTTCCTCATATACCTGTTACTGATGTTGCTGGAGAGGTTGTAAAAGTTGGAGAGGGCGTCCAAAAGTTCAAACCGGGCGACAAAGTTGTGGCATATCTGACCGCTGCTATTGTAGGTGGACTGGCTGAGTACACCACAGCTAGTGAGAACATGACAGTGGCCAGGCCACCCGAAGTTTCAGCAGCTGAAGCTGCAGGCTTACCTATTGCTGGCGTCACAGCTCACCAATGTCTCACGCAAGCTGCTCGGGTCAAGCTTGACGGAAGTGGCCAGCAAAAGAACATATTGATTACTGCTGCCTCTGGCGGTGTGGGTCAGTATGCAGTCCAATTAGCCAAGCTCGGTAATGCTCATGTTACAGCCACTTGTGGAGCTCGTAACGTTGAATTGGTCAAGAGCTTAGGGGCAGATGAGGTTCTTGACTACAAGACCCCAGAAGGAGCAGCTCTGAAGAGCCCATCTGGTCGGAAATATGATGTCGTGGTCCACTGTGATGAAATTGAGGTTCCACCATAA

Protein Analysis

378

Amino Acids

40.03

Weight (kDa)

9.22

Isoelectric Point (pI)

29.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000313)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G13010
fragaria_vesca FvH4_2g18240 FvH4_2g18280 FvH4_2g18310 FvH4_2g18320 FvH4_2g18330 FvH4_2g18340 FvH4_2g18350
malus_domestica MD05G1166800.v1.1 MD05G1167200.v1.1 MD05G1167300.v1.1 MD05G1167400.v1.1 MD05G1167600.v1.1 MD05G1168000.v1.1 MD05G1168200.v1.1 MD05G1168400.v1.1 MD05G1168600.v1.1 MD05G1168700.v1.1 MD05G1168800.v1.1 MD10G1156900.v1.1 MD10G1157000.v1.1 MD10G1157100.v1.1 MD10G1157200.v1.1
prunus_persica Prupe.8G195100_v2.0.a1 Prupe.8G195100_v2.0.a1 Prupe.8G195300_v2.0.a1 Prupe.8G195600_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G196000_v2.0.a1 Prupe.8G196000_v2.0.a1
pyrus_communis pycom05g15560 pycom05g15600 pycom05g15610 pycom05g15620 pycom05g15630 pycom10g13550 pycom10g13570
rosa_chinensis RchiOBHm_Chr6g0283611 RchiOBHm_Chr6g0283631 RchiOBHm_Chr6g0283641 RchiOBHm_Chr6g0283661 RchiOBHm_Chr6g0283681 RchiOBHm_Chr6g0283691 RchiOBHm_Chr6g0283701 RchiOBHm_Chr6g0283711 RchiOBHm_Chr6g0283721
rosa_laevigata RLG00000012804 RLG00000012807 RLG00000012811
rosa_multiflora Rmu_co8263921.1_g000001 Rmu_sc0001521.1_g000009 Rmu_sc0002906.1_g000002 Rmu_sc0002906.1_g000011 Rmu_sc0002906.1_g000013 Rmu_sc0005719.1_g000016 Rmu_sc0005719.1_g000022 Rmu_sc0029460.1_g000001
rosa_roxburghii Rroxscaffold_7G00185240 Rroxscaffold_7G00185250 Rroxscaffold_7G00185270 Rroxscaffold_7G00185280 Rroxscaffold_7G00185290 Rroxscaffold_7G00185330 Rroxscaffold_7G00185350
rosa_rugosa Rorug06G0156100 Rorug06G0156300 Rorug06G0156400 Rorug06G0156500 Rorug06G0156600 Rorug06G0156700 Rorug06G0156800 Rorug06G0156900 Rorug06G0157000
rosa_samantha Rh6AG267900 Rh6AG268100 Rh6AG268200 Rh6AG268400 Rh6AG268600 Rh6AG268700 Rh6AG268900 Rh6AG269100 Rh6BG270700 Rh6BG270900 Rh6BG271000 Rh6BG271200 Rh6BG271400 Rh6BG271500 Rh6CG270200 Rh6CG270400 Rh6CG270500 Rh6CG270800 Rh6CG270900 Rh6CG271000 Rh6CG271100 Rh6CG271300 Rh6DG263900 Rh6DG264100 Rh6DG264200 Rh6DG264400 Rh6DG264600 Rh6DG264800 Rh6DG265200
rosa_wichuraiana Rw6G023210 Rw6G023220 Rw6G023230 Rw6G023240 Rw6G023250 Rw6G023260 Rw6G023270 Rw6G023280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 271
AciI CCGC 3 cut(s) 449, 720, 924
AclI AACGTT 1 cut(s) 999
AcoI YGGCCR 3 cut(s) 27, 777, 886
AcsI RAATTY 3 cut(s) 286, 579, 617
AcuI CTGAAG 4 cut(s) 260, 402, 825, 1088
AcyI GRCGYC 3 cut(s) 431, 675, 831
AfaI GTAC 2 cut(s) 458, 749
AfiI CCNNNNNNNGG 3 cut(s) 188, 524, 827
AgsI TTSAA 3 cut(s) 292, 688, 1004
AjnI CCWGG 1 cut(s) 779
Alw21I GWGCWC 1 cut(s) 994
Alw26I GTCTC 1 cut(s) 854
AlwNI CAGNNNCTG 1 cut(s) 803
Ama87I CYCGRG 2 cut(s) 205, 864
AoxI GGCC 4 cut(s) 27, 777, 782, 886
ApoI RAATTY 3 cut(s) 286, 579, 617
AspS9I GGNCC 3 cut(s) 179, 199, 1102
AsuC2I CCSGG 1 cut(s) 693
AsuHPI GGTGA 1 cut(s) 833
AvaI CYCGRG 2 cut(s) 205, 864
AvaII GGWCC 3 cut(s) 179, 199, 1102
BalI TGGCCA 3 cut(s) 29, 779, 888
BanI GGYRCC 1 cut(s) 271
BanII GRGCYC 2 cut(s) 994, 1076
Bbv12I GWGCWC 1 cut(s) 994
BccI CCATC 3 cut(s) 58, 181, 1084
BcgI CGANNNNNNTGC 4 cut(s) 424, 458, 845, 879
BciT130I CCWGG 1 cut(s) 781
BciVI GTATCC 1 cut(s) 66
BcnI CCSGG 1 cut(s) 693
BcoDI GTCTC 1 cut(s) 854
BfaI CTAG 6 cut(s) 89, 314, 396, 408, 555, 759
BfmI CTRYAG 1 cut(s) 810
BfuI GTATCC 1 cut(s) 66
Bme1390I CCNGG 2 cut(s) 693, 781
Bme18I GGWCC 3 cut(s) 179, 199, 1102
BmeT110I CYCGRG 2 cut(s) 205, 864
BmgT120I GGNCC 3 cut(s) 179, 199, 1102
BmiI GGNNCC 3 cut(s) 273, 504, 1125
BmrFI CCNGG 2 cut(s) 693, 781
BmsI GCATC 3 cut(s) 67, 101, 376
BpmI CTGGAG 1 cut(s) 669
Bpu10I CCTNAGC 1 cut(s) 1018
BpuEI CTTGAG 1 cut(s) 326
BpuMI CCSGG 1 cut(s) 693
BsaHI GRCGYC 3 cut(s) 431, 675, 831
BsaXI ACNNNNNCTCC 4 cut(s) 642, 660, 672, 690
Bsc4I CCNNNNNNNGG 3 cut(s) 188, 524, 827
Bse1I ACTGG 3 cut(s) 81, 573, 744
BseBI CCWGG 1 cut(s) 781
BseLI CCNNNNNNNGG 3 cut(s) 188, 524, 827
BseMII CTCAG 3 cut(s) 288, 362, 735
BseNI ACTGG 3 cut(s) 81, 573, 744
BseRI GAGGAG 1 cut(s) 489
BsgI GTGCAG 1 cut(s) 473
BshFI GGCC 4 cut(s) 29, 779, 784, 888
BshNI GGYRCC 1 cut(s) 271
BsiHKAI GWGCWC 1 cut(s) 994
BsiHKCI CYCGRG 2 cut(s) 205, 864
BsiSI CCGG 1 cut(s) 692
BslI CCNNNNNNNGG 3 cut(s) 188, 524, 827
BsmAI GTCTC 1 cut(s) 854
BsnI GGCC 4 cut(s) 29, 779, 784, 888
BsoBI CYCGRG 2 cut(s) 205, 864
Bsp1286I GDGCHC 2 cut(s) 994, 1076
Bsp143I GATC 1 cut(s) 351
BspACI CCGC 3 cut(s) 449, 720, 924
BspANI GGCC 4 cut(s) 29, 779, 784, 888
BspCNI CTCAG 3 cut(s) 289, 363, 736
BspLI GGNNCC 3 cut(s) 273, 504, 1125
BspMAI CTGCAG 1 cut(s) 814
BspQI GCTCTTC 1 cut(s) 1064
BspT107I GGYRCC 1 cut(s) 271
BsrI ACTGG 3 cut(s) 81, 573, 744
BssMI GATC 1 cut(s) 351
BssNI GRCGYC 3 cut(s) 431, 675, 831
Bst2UI CCWGG 1 cut(s) 781
Bst4CI ACNGT 3 cut(s) 349, 775, 1109
Bst6I CTCTTC 1 cut(s) 1064
BstACI GRCGYC 3 cut(s) 431, 675, 831
BstAPI GCANNNNNTGC 1 cut(s) 451
BstC8I GCNNGC 7 cut(s) 31, 424, 447, 814, 829, 858, 890
BstDEI CTNAG 4 cut(s) 297, 371, 744, 1018
BstKTI GATC 1 cut(s) 354
BstMAI GTCTC 1 cut(s) 854
BstMBI GATC 1 cut(s) 351
BstMWI GCNNNNNNNGC 7 cut(s) 271, 386, 423, 428, 451, 806, 809
BstNI CCWGG 1 cut(s) 781
BstNSI RCATGY 2 cut(s) 449, 497
BstSCI CCNGG 2 cut(s) 691, 779
BstSFI CTRYAG 1 cut(s) 810
BstXI CCANNNNNNTGG 1 cut(s) 573
BsuI GTATCC 1 cut(s) 66
BsuRI GGCC 4 cut(s) 29, 779, 784, 888
BtsI GCAGTG 1 cut(s) 275
BtsIMutI CAGTG 5 cut(s) 275, 354, 566, 780, 1105
Cac8I GCNNGC 7 cut(s) 31, 424, 447, 814, 829, 858, 890
CaiI CAGNNNCTG 1 cut(s) 803
Cfr13I GGNCC 3 cut(s) 179, 199, 1102
CseI GACGC 3 cut(s) 420, 664, 820
Csp6I GTAC 2 cut(s) 457, 748
CviAII CATG 7 cut(s) 283, 418, 427, 446, 494, 769, 971
CviQI GTAC 2 cut(s) 457, 748
DdeI CTNAG 4 cut(s) 297, 371, 744, 1018
DpnI GATC 1 cut(s) 353
DpnII GATC 1 cut(s) 351
EaeI YGGCCR 3 cut(s) 27, 777, 886
Eam1104I CTCTTC 1 cut(s) 1064
EarI CTCTTC 1 cut(s) 1064
Ecl136II GAGCTC 1 cut(s) 992
Eco24I GRGCYC 2 cut(s) 994, 1076
Eco47I GGWCC 3 cut(s) 179, 199, 1102
Eco53kI GAGCTC 1 cut(s) 992
Eco57I CTGAAG 4 cut(s) 260, 402, 825, 1088
Eco88I CYCGRG 2 cut(s) 205, 864
EcoICRI GAGCTC 1 cut(s) 992
EcoRII CCWGG 1 cut(s) 779
EcoT22I ATGCAT 1 cut(s) 447
EcoT38I GRGCYC 2 cut(s) 994, 1076
FaeI CATG 7 cut(s) 286, 421, 430, 449, 497, 772, 974
FatI CATG 7 cut(s) 282, 417, 426, 445, 493, 768, 970
FriOI GRGCYC 2 cut(s) 994, 1076
FspBI CTAG 6 cut(s) 89, 314, 396, 408, 555, 759
GsuI CTGGAG 1 cut(s) 669
HaeIII GGCC 4 cut(s) 29, 779, 784, 888
HapII CCGG 1 cut(s) 692
HgaI GACGC 3 cut(s) 420, 664, 820
Hin1I GRCGYC 3 cut(s) 431, 675, 831
Hin1II CATG 7 cut(s) 286, 421, 430, 449, 497, 772, 974
HindIII AAGCTT 1 cut(s) 872
HinfI GANTC 2 cut(s) 356, 400
HpaII CCGG 1 cut(s) 692
HphI GGTGA 1 cut(s) 833
Hpy166II GTNNAC 5 cut(s) 202, 488, 737, 750, 1105
Hpy188III TCNNGA 6 cut(s) 134, 207, 292, 343, 1012, 1037
Hpy8I GTNNAC 5 cut(s) 202, 488, 737, 750, 1105
Hpy99I CGWCG 3 cut(s) 22, 436, 464
HpyAV CCTTC 6 cut(s) 146, 204, 232, 262, 326, 1049
HpyCH4III ACNGT 3 cut(s) 349, 775, 1109
HpyCH4IV ACGT 2 cut(s) 459, 999
HpyCH4V TGCA 7 cut(s) 4, 58, 417, 445, 454, 812, 941
HpyF10VI GCNNNNNNNGC 7 cut(s) 271, 386, 423, 428, 451, 806, 809
HpyF3I CTNAG 4 cut(s) 297, 371, 744, 1018
HpySE526I ACGT 2 cut(s) 459, 999
Hsp92I GRCGYC 3 cut(s) 431, 675, 831
Hsp92II CATG 7 cut(s) 286, 421, 430, 449, 497, 772, 974
Kzo9I GATC 1 cut(s) 351
LguI GCTCTTC 1 cut(s) 1064
LmnI GCTCC 4 cut(s) 155, 476, 989, 1058
LweI GCATC 3 cut(s) 67, 101, 376
MaeI CTAG 6 cut(s) 89, 314, 396, 408, 555, 759
MaeII ACGT 2 cut(s) 459, 999
MaeIII GTNAC 5 cut(s) 226, 634, 832, 973, 995
MalI GATC 1 cut(s) 353
MboI GATC 1 cut(s) 351
MboII GAAGA 5 cut(s) 253, 359, 395, 532, 1081
MhlI GDGCHC 2 cut(s) 994, 1076
MlsI TGGCCA 3 cut(s) 29, 779, 888
MluCI AATT 7 cut(s) 286, 542, 579, 617, 947, 1004, 1116
MluNI TGGCCA 3 cut(s) 29, 779, 888
MlyI GAGTC 1 cut(s) 350
MmeI TCCRAC 4 cut(s) 109, 428, 646, 1064
Mox20I TGGCCA 3 cut(s) 29, 779, 888
Mph1103I ATGCAT 1 cut(s) 447
MscI TGGCCA 3 cut(s) 29, 779, 888
MslI CAYNNNNRTG 2 cut(s) 773, 1110
Msp20I TGGCCA 3 cut(s) 29, 779, 888
MspA1I CMGCKG 2 cut(s) 722, 803
MspI CCGG 1 cut(s) 692
MspR9I CCNGG 2 cut(s) 693, 781
MvaI CCWGG 1 cut(s) 781
MwoI GCNNNNNNNGC 7 cut(s) 271, 386, 423, 428, 451, 806, 809
NciI CCSGG 1 cut(s) 693
NdeII GATC 1 cut(s) 351
NlaIII CATG 7 cut(s) 286, 421, 430, 449, 497, 772, 974
NlaIV GGNNCC 3 cut(s) 273, 504, 1125
NmuCI GTSAC 1 cut(s) 832
NsiI ATGCAT 1 cut(s) 447
NspI RCATGY 2 cut(s) 449, 497
PaeI GCATGC 1 cut(s) 449
PciSI GCTCTTC 1 cut(s) 1064
PfeI GAWTC 1 cut(s) 400
PleI GAGTC 1 cut(s) 350
PpsI GAGTC 1 cut(s) 350
Psp124BI GAGCTC 1 cut(s) 994
Psp1406I AACGTT 1 cut(s) 999
Psp6I CCWGG 1 cut(s) 779
PspGI CCWGG 1 cut(s) 779
PspN4I GGNNCC 3 cut(s) 273, 504, 1125
PspPI GGNCC 3 cut(s) 179, 199, 1102
PstI CTGCAG 1 cut(s) 814
PstNI CAGNNNCTG 1 cut(s) 803
PvuII CAGCTG 1 cut(s) 803
RsaI GTAC 2 cut(s) 458, 749
RsaNI GTAC 2 cut(s) 457, 748
RseI CAYNNNNRTG 2 cut(s) 773, 1110
SacI GAGCTC 1 cut(s) 994
SapI GCTCTTC 1 cut(s) 1064
Sau3AI GATC 1 cut(s) 351
Sau96I GGNCC 3 cut(s) 179, 199, 1102
SchI GAGTC 1 cut(s) 350
ScrFI CCNGG 2 cut(s) 693, 781
SduI GDGCHC 2 cut(s) 994, 1076
SfaNI GCATC 3 cut(s) 67, 101, 376
SfcI CTRYAG 1 cut(s) 810
SinI GGWCC 3 cut(s) 179, 199, 1102
SmiMI CAYNNNNRTG 2 cut(s) 773, 1110
SmlI CTYRAG 1 cut(s) 341
SmoI CTYRAG 1 cut(s) 341
SphI GCATGC 1 cut(s) 449
Sse9I AATT 7 cut(s) 286, 542, 579, 617, 947, 1004, 1116
SsiI CCGC 3 cut(s) 449, 720, 924
SspMI CTAG 6 cut(s) 89, 314, 396, 408, 555, 759
SstI GAGCTC 1 cut(s) 994
StyD4I CCNGG 2 cut(s) 691, 779
TaaI ACNGT 3 cut(s) 349, 775, 1109
TaiI ACGT 2 cut(s) 462, 1002
TaqI TCGA 4 cut(s) 17, 354, 359, 434
TasI AATT 7 cut(s) 286, 542, 579, 617, 947, 1004, 1116
TatI WGTACW 1 cut(s) 747
TfiI GAWTC 1 cut(s) 400
TscAI CASTG 5 cut(s) 282, 354, 573, 780, 1112
TseFI GTSAC 1 cut(s) 832
Tsp45I GTSAC 1 cut(s) 832
TspDTI ATGAA 2 cut(s) 299, 1128
TspGWI ACGGA 3 cut(s) 35, 133, 894
TspRI CASTG 5 cut(s) 282, 354, 573, 780, 1112
VpaK11BI GGWCC 3 cut(s) 179, 199, 1102
XapI RAATTY 3 cut(s) 286, 579, 617
XceI RCATGY 2 cut(s) 449, 497
XspI CTAG 6 cut(s) 89, 314, 396, 408, 555, 759
Zsp2I ATGCAT 1 cut(s) 447
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.