Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0000313

Physical Location & Seq

Genomic Coordinates Forward (+)

22415862 .. 22416611

Gene Structure 750 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0156500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGAACCACAAACCCAGCAACCAACCGAGGATGGAGGAAGCAACAAAGCAGCCGGGAGTAGTGCTAACATGCTTGGCAGGGAGAGCCGTACTAGGTGGATTCCCACTACAGATCATATAAGAATCCTCAAGGAGCTTTTCTACAACAAGGGAGTTAGGTCCCCAACTATAGAGCAGGTTCAGAGGATCTGTCTCCAGCTGAAATGGTACGGCAAGATTGAGTTCAAGAACGTCTATTTTTGGTTCGTGAACCAAAGGGCTCGGAAGAAGCAGAAGAAGAGGTCCACTTCGGATGTTCATGTGCCCATGCAAAGATCAGGGCTTGTTGGTGATGACAATGTTACCAATTGGAAACATGAGGATCAGTATATTAACTTTGGATCTTCTGCACCTGCTTCTACTTCTTCCGCTGGTGTGATGATTGCTTTTAACGGGCAGATGGGGAACTATGGCGGTTATGGATCCATGAACATGGAGAAGAGTGCTAGGGATTATTCAATCTCAACTGGAGGGGAAACTAGTTCTACTTTCTTTGACATGAATGTAGAACAAACTTTCATGGAACAAAGAGGAGAAGATCACCAGGAGATTGAAACCCTTTCACTGTTTCCCGTGCATGGTGAGGACATCTGTGGCAACATGAAGACTATTTCCGATGGAGGTGGCTGTCACGGTGGTGGCTCTTACATTTCCCTTGAGCTCAACCTTTCCTGCGAGGGCAAAGCTGGAAAAAGTTTCCGGAGCCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N_2

Protein Analysis

249

Amino Acids

27.77

Weight (kDa)

7.69

Isoelectric Point (pI)

51.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	30 - 91	1.2e-07	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13010
fragaria_vesca	FvH4_2g18240 FvH4_2g18280 FvH4_2g18310 FvH4_2g18320 FvH4_2g18330 FvH4_2g18340 FvH4_2g18350
malus_domestica	MD05G1166800.v1.1 MD05G1167200.v1.1 MD05G1167300.v1.1 MD05G1167400.v1.1 MD05G1167600.v1.1 MD05G1168000.v1.1 MD05G1168200.v1.1 MD05G1168400.v1.1 MD05G1168600.v1.1 MD05G1168700.v1.1 MD05G1168800.v1.1 MD10G1156900.v1.1 MD10G1157000.v1.1 MD10G1157100.v1.1 MD10G1157200.v1.1
prunus_persica	Prupe.8G195100_v2.0.a1 Prupe.8G195100_v2.0.a1 Prupe.8G195300_v2.0.a1 Prupe.8G195600_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G196000_v2.0.a1 Prupe.8G196000_v2.0.a1
pyrus_communis	pycom05g15560 pycom05g15600 pycom05g15610 pycom05g15620 pycom05g15630 pycom10g13550 pycom10g13570
rosa_chinensis	RchiOBHm_Chr6g0283611 RchiOBHm_Chr6g0283631 RchiOBHm_Chr6g0283641 RchiOBHm_Chr6g0283661 RchiOBHm_Chr6g0283681 RchiOBHm_Chr6g0283691 RchiOBHm_Chr6g0283701 RchiOBHm_Chr6g0283711 RchiOBHm_Chr6g0283721
rosa_laevigata	RLG00000012804 RLG00000012807 RLG00000012811
rosa_multiflora	Rmu_co8263921.1_g000001 Rmu_sc0001521.1_g000009 Rmu_sc0002906.1_g000002 Rmu_sc0002906.1_g000011 Rmu_sc0002906.1_g000013 Rmu_sc0005719.1_g000016 Rmu_sc0005719.1_g000022 Rmu_sc0029460.1_g000001
rosa_roxburghii	Rroxscaffold_7G00185240 Rroxscaffold_7G00185250 Rroxscaffold_7G00185270 Rroxscaffold_7G00185280 Rroxscaffold_7G00185290 Rroxscaffold_7G00185330 Rroxscaffold_7G00185350
rosa_rugosa	Rorug06G0156100 Rorug06G0156300 Rorug06G0156400 Rorug06G0156500 Rorug06G0156600 Rorug06G0156700 Rorug06G0156800 Rorug06G0156900 Rorug06G0157000
rosa_samantha	Rh6AG267900 Rh6AG268100 Rh6AG268200 Rh6AG268400 Rh6AG268600 Rh6AG268700 Rh6AG268900 Rh6AG269100 Rh6BG270700 Rh6BG270900 Rh6BG271000 Rh6BG271200 Rh6BG271400 Rh6BG271500 Rh6CG270200 Rh6CG270400 Rh6CG270500 Rh6CG270800 Rh6CG270900 Rh6CG271000 Rh6CG271100 Rh6CG271300 Rh6DG263900 Rh6DG264100 Rh6DG264200 Rh6DG264400 Rh6DG264600 Rh6DG264800 Rh6DG265200
rosa_wichuraiana	Rw6G023210 Rw6G023220 Rw6G023230 Rw6G023240 Rw6G023250 Rw6G023260 Rw6G023270 Rw6G023280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	400
Acc36I	ACCTGC	2 cut(s)	166, 400
AccIII	TCCGGA	1 cut(s)	738
AciI	CCGC	3 cut(s)	408, 453, 745
AclWI	GGATC	5 cut(s)	194, 369, 388, 456, 469
AfaI	GTAC	2 cut(s)	91, 209
AfiI	CCNNNNNNNGG	1 cut(s)	617
AgsI	TTSAA	3 cut(s)	226, 498, 593
AhlI	ACTAGT	1 cut(s)	518
AjnI	CCWGG	1 cut(s)	582
AleI	CACNNNNGTG	1 cut(s)	675
AluBI	AGCT	4 cut(s)	136, 199, 700, 725
AluI	AGCT	4 cut(s)	136, 199, 700, 725
Alw21I	GWGCWC	1 cut(s)	702
Alw26I	GTCTC	1 cut(s)	197
AlwI	GGATC	5 cut(s)	194, 369, 388, 456, 469
Aor13HI	TCCGGA	1 cut(s)	738
ApeKI	GCWGC	1 cut(s)	50
AspS9I	GGNCC	2 cut(s)	159, 282
AsuC2I	CCSGG	1 cut(s)	55
AsuHPI	GGTGA	3 cut(s)	341, 572, 632
AvaII	GGWCC	2 cut(s)	159, 282
BaeGI	GKGCMC	1 cut(s)	306
BamHI	GGATCC	1 cut(s)	461
BanII	GRGCYC	2 cut(s)	262, 702
BbsI	GAAGAC	1 cut(s)	650
Bbv12I	GWGCWC	1 cut(s)	702
BbvI	GCAGC	1 cut(s)	62
BccI	CCATC	3 cut(s)	26, 433, 650
BceAI	ACGGC	2 cut(s)	72, 226
BciT130I	CCWGG	1 cut(s)	584
BcnI	CCSGG	1 cut(s)	55
BcoDI	GTCTC	1 cut(s)	197
BcuI	ACTAGT	1 cut(s)	518
BfaI	CTAG	3 cut(s)	93, 486, 519
BfmI	CTRYAG	2 cut(s)	108, 168
BfuAI	ACCTGC	2 cut(s)	166, 400
BisI	GCNGC	2 cut(s)	51, 745
BlsI	GCNGC	2 cut(s)	52, 746
Bme1390I	CCNGG	2 cut(s)	55, 584
Bme18I	GGWCC	2 cut(s)	159, 282
BmgT120I	GGNCC	2 cut(s)	159, 282
BmiI	GGNNCC	4 cut(s)	6, 161, 463, 743
BmrFI	CCNGG	2 cut(s)	55, 584
BpiI	GAAGAC	1 cut(s)	650
BpmI	CTGGAG	2 cut(s)	179, 528
BpuEI	CTTGAG	2 cut(s)	113, 716
BpuMI	CCSGG	1 cut(s)	55
BsaJI	CCNNGG	1 cut(s)	27
BsaWI	WCCGGW	1 cut(s)	738
Bsc4I	CCNNNNNNNGG	1 cut(s)	617
Bse1I	ACTGG	1 cut(s)	511
BseAI	TCCGGA	1 cut(s)	738
BseBI	CCWGG	1 cut(s)	584
BseDI	CCNNGG	1 cut(s)	27
BseGI	GGATG	2 cut(s)	37, 298
BseLI	CCNNNNNNNGG	1 cut(s)	617
BseNI	ACTGG	1 cut(s)	511
BseRI	GAGGAG	1 cut(s)	585
BseSI	GKGCMC	1 cut(s)	306
BseXI	GCAGC	1 cut(s)	62
BseYI	CCCAGC	1 cut(s)	15
BsgI	GTGCAG	1 cut(s)	372
BsiHKAI	GWGCWC	1 cut(s)	702
BsiSI	CCGG	2 cut(s)	54, 739
BslFI	GGGAC	1 cut(s)	145
BslI	CCNNNNNNNGG	1 cut(s)	617
BsmAI	GTCTC	1 cut(s)	197
BsmFI	GGGAC	1 cut(s)	145
Bsp1286I	GDGCHC	3 cut(s)	262, 306, 702
Bsp13I	TCCGGA	1 cut(s)	738
Bsp143I	GATC	7 cut(s)	112, 186, 314, 361, 380, 461, 577
BspACI	CCGC	3 cut(s)	408, 453, 745
BspEI	TCCGGA	1 cut(s)	738
BspLI	GGNNCC	4 cut(s)	6, 161, 463, 743
BspMI	ACCTGC	2 cut(s)	166, 400
BspPI	GGATC	5 cut(s)	194, 369, 388, 456, 469
BsrI	ACTGG	1 cut(s)	511
BssECI	CCNNGG	1 cut(s)	27
BssMI	GATC	7 cut(s)	112, 186, 314, 361, 380, 461, 577
Bst2UI	CCWGG	1 cut(s)	584
Bst4CI	ACNGT	2 cut(s)	606, 674
Bst6I	CTCTTC	2 cut(s)	272, 473
BstF5I	GGATG	2 cut(s)	37, 298
BstKTI	GATC	7 cut(s)	115, 189, 317, 364, 383, 464, 580
BstMAI	GTCTC	1 cut(s)	197
BstMBI	GATC	7 cut(s)	112, 186, 314, 361, 380, 461, 577
BstMWI	GCNNNNNNNGC	1 cut(s)	84
BstNI	CCWGG	1 cut(s)	584
BstNSI	RCATGY	1 cut(s)	73
BstSCI	CCNGG	2 cut(s)	53, 582
BstSFI	CTRYAG	2 cut(s)	108, 168
BstSLI	GKGCMC	1 cut(s)	306
BstV1I	GCAGC	1 cut(s)	62
BstV2I	GAAGAC	1 cut(s)	650
BstX2I	RGATCY	3 cut(s)	186, 380, 461
BstXI	CCANNNNNNTGG	1 cut(s)	472
BstYI	RGATCY	3 cut(s)	186, 380, 461
BtsCI	GGATG	2 cut(s)	37, 298
BtsIMutI	CAGTG	1 cut(s)	602
BveI	ACCTGC	2 cut(s)	166, 400
Cfr13I	GGNCC	2 cut(s)	159, 282
Csp6I	GTAC	2 cut(s)	90, 208
CviQI	GTAC	2 cut(s)	90, 208
DpnI	GATC	7 cut(s)	114, 188, 316, 363, 382, 463, 579
DpnII	GATC	7 cut(s)	112, 186, 314, 361, 380, 461, 577
Eam1104I	CTCTTC	2 cut(s)	272, 473
EarI	CTCTTC	2 cut(s)	272, 473
Ecl136II	GAGCTC	1 cut(s)	700
Eco24I	GRGCYC	2 cut(s)	262, 702
Eco47I	GGWCC	2 cut(s)	159, 282
Eco53kI	GAGCTC	1 cut(s)	700
EcoICRI	GAGCTC	1 cut(s)	700
EcoO109I	RGGNCCY	1 cut(s)	159
EcoRII	CCWGG	1 cut(s)	582
EcoT38I	GRGCYC	2 cut(s)	262, 702
FaqI	GGGAC	1 cut(s)	145
Fnu4HI	GCNGC	2 cut(s)	51, 745
FokI	GGATG	2 cut(s)	44, 305
FriOI	GRGCYC	2 cut(s)	262, 702
Fsp4HI	GCNGC	2 cut(s)	51, 745
FspBI	CTAG	3 cut(s)	93, 486, 519
GluI	GCNGC	2 cut(s)	51, 745
GsaI	CCCAGC	1 cut(s)	19
GsuI	CTGGAG	2 cut(s)	179, 528
HapII	CCGG	2 cut(s)	54, 739
HinfI	GANTC	2 cut(s)	100, 123
HpaII	CCGG	2 cut(s)	54, 739
HphI	GGTGA	3 cut(s)	341, 572, 632
Hpy166II	GTNNAC	2 cut(s)	250, 285
Hpy188I	TCNGA	4 cut(s)	183, 264, 292, 655
Hpy188III	TCNNGA	3 cut(s)	226, 247, 739
Hpy8I	GTNNAC	2 cut(s)	250, 285
HpyCH4III	ACNGT	2 cut(s)	606, 674
HpyCH4IV	ACGT	1 cut(s)	231
HpyCH4V	TGCA	3 cut(s)	310, 389, 616
HpyF10VI	GCNNNNNNNGC	1 cut(s)	84
HpySE526I	ACGT	1 cut(s)	231
Kpn2I	TCCGGA	1 cut(s)	738
Kzo9I	GATC	7 cut(s)	112, 186, 314, 361, 380, 461, 577
LmnI	GCTCC	2 cut(s)	133, 741
Lsp1109I	GCAGC	1 cut(s)	62
MaeI	CTAG	3 cut(s)	93, 486, 519
MaeII	ACGT	1 cut(s)	231
MaeIII	GTNAC	2 cut(s)	340, 668
MalI	GATC	7 cut(s)	114, 188, 316, 363, 382, 463, 579
MboI	GATC	7 cut(s)	112, 186, 314, 361, 380, 461, 577
MboII	GAAGA	8 cut(s)	277, 286, 289, 375, 396, 490, 587, 655
MfeI	CAATTG	1 cut(s)	346
MflI	RGATCY	3 cut(s)	186, 380, 461
MhlI	GDGCHC	3 cut(s)	262, 306, 702
MluCI	AATT	1 cut(s)	346
MroI	TCCGGA	1 cut(s)	738
MseI	TTAA	2 cut(s)	372, 429
MslI	CAYNNNNRTG	2 cut(s)	470, 675
MspA1I	CMGCKG	3 cut(s)	199, 410, 747
MspI	CCGG	2 cut(s)	54, 739
MspR9I	CCNGG	2 cut(s)	55, 584
MunI	CAATTG	1 cut(s)	346
MvaI	CCWGG	1 cut(s)	584
MwoI	GCNNNNNNNGC	1 cut(s)	84
NciI	CCSGG	1 cut(s)	55
NdeII	GATC	7 cut(s)	112, 186, 314, 361, 380, 461, 577
NlaIV	GGNNCC	4 cut(s)	6, 161, 463, 743
NmuCI	GTSAC	1 cut(s)	668
NspI	RCATGY	1 cut(s)	73
OliI	CACNNNNGTG	1 cut(s)	675
PaqCI	CACCTGC	1 cut(s)	400
PfeI	GAWTC	2 cut(s)	100, 123
PkrI	GCNGC	2 cut(s)	52, 746
PpuMI	RGGWCCY	1 cut(s)	159
Psp124BI	GAGCTC	1 cut(s)	702
Psp5II	RGGWCCY	1 cut(s)	159
Psp6I	CCWGG	1 cut(s)	582
PspFI	CCCAGC	1 cut(s)	15
PspGI	CCWGG	1 cut(s)	582
PspN4I	GGNNCC	4 cut(s)	6, 161, 463, 743
PspPI	GGNCC	2 cut(s)	159, 282
PspPPI	RGGWCCY	1 cut(s)	159
PsuI	RGATCY	3 cut(s)	186, 380, 461
PvuII	CAGCTG	1 cut(s)	199
RsaI	GTAC	2 cut(s)	91, 209
RsaNI	GTAC	2 cut(s)	90, 208
RseI	CAYNNNNRTG	2 cut(s)	470, 675
SacI	GAGCTC	1 cut(s)	702
SaqAI	TTAA	2 cut(s)	372, 429
SatI	GCNGC	2 cut(s)	51, 745
Sau3AI	GATC	7 cut(s)	112, 186, 314, 361, 380, 461, 577
Sau96I	GGNCC	2 cut(s)	159, 282
ScrFI	CCNGG	2 cut(s)	55, 584
SduI	GDGCHC	3 cut(s)	262, 306, 702
SfcI	CTRYAG	2 cut(s)	108, 168
SinI	GGWCC	2 cut(s)	159, 282
SmiMI	CAYNNNNRTG	2 cut(s)	470, 675
SmlI	CTYRAG	2 cut(s)	128, 695
SmoI	CTYRAG	2 cut(s)	128, 695
SpeI	ACTAGT	1 cut(s)	518
Sse9I	AATT	1 cut(s)	346
SsiI	CCGC	3 cut(s)	408, 453, 745
SspMI	CTAG	3 cut(s)	93, 486, 519
SstI	GAGCTC	1 cut(s)	702
StyD4I	CCNGG	2 cut(s)	53, 582
TaaI	ACNGT	2 cut(s)	606, 674
TaiI	ACGT	1 cut(s)	234
TasI	AATT	1 cut(s)	346
TauI	GCSGC	1 cut(s)	747
TfiI	GAWTC	2 cut(s)	100, 123
Tru1I	TTAA	2 cut(s)	372, 429
Tru9I	TTAA	2 cut(s)	372, 429
TscAI	CASTG	1 cut(s)	609
TseFI	GTSAC	1 cut(s)	668
TseI	GCWGC	1 cut(s)	50
Tsp45I	GTSAC	1 cut(s)	668
TspDTI	ATGAA	5 cut(s)	287, 482, 547, 554, 656
TspRI	CASTG	1 cut(s)	609
VpaK11BI	GGWCC	2 cut(s)	159, 282
XceI	RCATGY	1 cut(s)	73
XspI	CTAG	3 cut(s)	93, 486, 519

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.