Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0000313

Physical Location & Seq

Genomic Coordinates Forward (+)

22426742 .. 22427677

Gene Structure 936 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0156600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGTCGCCGGGAATGAGCAAATGCAACAAGCTCCGACGCATCGTCAGAATCCGTCAAATGCTACAACGCTGGCACAAGAAGGCGCACATCAAGGCCTCACAGCTTGCGCCATCGGACGTCCCAGCGGGACACGTCGCCGTCTGCGTGGGCAGCAGCTGCAGGAGGTTCATCGTGCGCGCCACCTACCTGAACCACCCCATCTTCAAGAAGCTTCTGGTGCAGGCCGAGGAGGAGTACGGCTTCGCCAACCAGCCAGGACCTCTGGCCATCCCATGCGACGAGTCGTTCTTCGAAGAGGTTCTTCGGATGCTCTCCAGGTCGGACTCTGGTAGATCCGGGAGGTTCTTGAGCCTGGAGGATCTCCAGAGACCCTGCCATGTTGATACTTTGAACAAGCTGCAAGTTCTGGATGAATCCTGGCCTTTGCTCCAGGGGATGGCTGATAAAACAGTATGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N_2

Protein Analysis

152

Amino Acids

17.23

Weight (kDa)

9.32

Isoelectric Point (pI)

74.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_inducible	PF02519	16 - 104	3.7e-29	Auxin responsive protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13010
fragaria_vesca	FvH4_2g18240 FvH4_2g18280 FvH4_2g18310 FvH4_2g18320 FvH4_2g18330 FvH4_2g18340 FvH4_2g18350
malus_domestica	MD05G1166800.v1.1 MD05G1167200.v1.1 MD05G1167300.v1.1 MD05G1167400.v1.1 MD05G1167600.v1.1 MD05G1168000.v1.1 MD05G1168200.v1.1 MD05G1168400.v1.1 MD05G1168600.v1.1 MD05G1168700.v1.1 MD05G1168800.v1.1 MD10G1156900.v1.1 MD10G1157000.v1.1 MD10G1157100.v1.1 MD10G1157200.v1.1
prunus_persica	Prupe.8G195100_v2.0.a1 Prupe.8G195100_v2.0.a1 Prupe.8G195300_v2.0.a1 Prupe.8G195600_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G196000_v2.0.a1 Prupe.8G196000_v2.0.a1
pyrus_communis	pycom05g15560 pycom05g15600 pycom05g15610 pycom05g15620 pycom05g15630 pycom10g13550 pycom10g13570
rosa_chinensis	RchiOBHm_Chr6g0283611 RchiOBHm_Chr6g0283631 RchiOBHm_Chr6g0283641 RchiOBHm_Chr6g0283661 RchiOBHm_Chr6g0283681 RchiOBHm_Chr6g0283691 RchiOBHm_Chr6g0283701 RchiOBHm_Chr6g0283711 RchiOBHm_Chr6g0283721
rosa_laevigata	RLG00000012804 RLG00000012807 RLG00000012811
rosa_multiflora	Rmu_co8263921.1_g000001 Rmu_sc0001521.1_g000009 Rmu_sc0002906.1_g000002 Rmu_sc0002906.1_g000011 Rmu_sc0002906.1_g000013 Rmu_sc0005719.1_g000016 Rmu_sc0005719.1_g000022 Rmu_sc0029460.1_g000001
rosa_roxburghii	Rroxscaffold_7G00185240 Rroxscaffold_7G00185250 Rroxscaffold_7G00185270 Rroxscaffold_7G00185280 Rroxscaffold_7G00185290 Rroxscaffold_7G00185330 Rroxscaffold_7G00185350
rosa_rugosa	Rorug06G0156100 Rorug06G0156300 Rorug06G0156400 Rorug06G0156500 Rorug06G0156600 Rorug06G0156700 Rorug06G0156800 Rorug06G0156900 Rorug06G0157000
rosa_samantha	Rh6AG267900 Rh6AG268100 Rh6AG268200 Rh6AG268400 Rh6AG268600 Rh6AG268700 Rh6AG268900 Rh6AG269100 Rh6BG270700 Rh6BG270900 Rh6BG271000 Rh6BG271200 Rh6BG271400 Rh6BG271500 Rh6CG270200 Rh6CG270400 Rh6CG270500 Rh6CG270800 Rh6CG270900 Rh6CG271000 Rh6CG271100 Rh6CG271300 Rh6DG263900 Rh6DG264100 Rh6DG264200 Rh6DG264400 Rh6DG264600 Rh6DG264800 Rh6DG265200
rosa_wichuraiana	Rw6G023210 Rw6G023220 Rw6G023230 Rw6G023240 Rw6G023250 Rw6G023260 Rw6G023270 Rw6G023280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	120
AccB7I	CCANNNNNTGG	1 cut(s)	436
AccII	CGCG	1 cut(s)	177
AciI	CCGC	1 cut(s)	125
AclWI	GGATC	2 cut(s)	327, 366
AcoI	YGGCCR	1 cut(s)	264
AcyI	GRCGYC	1 cut(s)	117
AfaI	GTAC	1 cut(s)	236
AfiI	CCNNNNNNNGG	1 cut(s)	436
AflIII	ACRYGT	1 cut(s)	130
AgsI	TTSAA	2 cut(s)	205, 391
AhdI	GACNNNNNGTC	1 cut(s)	41
AjiI	CACGTC	1 cut(s)	133
AjnI	CCWGG	5 cut(s)	253, 314, 351, 416, 429
AluBI	AGCT	5 cut(s)	31, 103, 156, 211, 397
AluI	AGCT	5 cut(s)	31, 103, 156, 211, 397
Alw26I	GTCTC	1 cut(s)	361
AlwI	GGATC	2 cut(s)	327, 366
AlwNI	CAGNNNCTG	1 cut(s)	156
AoxI	GGCC	4 cut(s)	93, 222, 264, 419
ApeKI	GCWGC	4 cut(s)	150, 153, 156, 397
Asp700I	GAANNNNTTC	1 cut(s)	297
AspLEI	GCGC	4 cut(s)	85, 109, 177, 179
AspS9I	GGNCC	1 cut(s)	257
AsuC2I	CCSGG	2 cut(s)	9, 337
AsuII	TTCGAA	1 cut(s)	291
AvaII	GGWCC	1 cut(s)	257
BalI	TGGCCA	1 cut(s)	266
BbvI	GCAGC	4 cut(s)	143, 162, 165, 384
BccI	CCATC	4 cut(s)	118, 206, 275, 430
BceAI	ACGGC	2 cut(s)	122, 253
BciT130I	CCWGG	5 cut(s)	255, 316, 353, 418, 431
BcnI	CCSGG	2 cut(s)	9, 337
BcoDI	GTCTC	1 cut(s)	361
BfmI	CTRYAG	1 cut(s)	157
BisI	GCNGC	4 cut(s)	151, 154, 157, 398
BlsI	GCNGC	4 cut(s)	152, 155, 158, 399
Bme1390I	CCNGG	7 cut(s)	9, 255, 316, 337, 353, 418, 431
Bme18I	GGWCC	1 cut(s)	257
BmeRI	GACNNNNNGTC	1 cut(s)	41
BmgBI	CACGTC	1 cut(s)	133
BmgT120I	GGNCC	1 cut(s)	257
BmrFI	CCNGG	7 cut(s)	9, 255, 316, 337, 353, 418, 431
BmsI	GCATC	2 cut(s)	48, 297
BpmI	CTGGAG	4 cut(s)	298, 347, 374, 413
Bpu14I	TTCGAA	1 cut(s)	291
BpuEI	CTTGAG	1 cut(s)	367
BpuMI	CCSGG	2 cut(s)	9, 337
BsaHI	GRCGYC	1 cut(s)	117
BsaI	GGTCTC	1 cut(s)	361
BsaJI	CCNNGG	2 cut(s)	225, 430
Bsc4I	CCNNNNNNNGG	1 cut(s)	436
BseBI	CCWGG	5 cut(s)	255, 316, 353, 418, 431
BseDI	CCNNGG	2 cut(s)	225, 430
BseGI	GGATG	4 cut(s)	267, 312, 415, 441
BseLI	CCNNNNNNNGG	1 cut(s)	436
BsePI	GCGCGC	1 cut(s)	175
BseRI	GAGGAG	2 cut(s)	242, 245
BseXI	GCAGC	4 cut(s)	143, 162, 165, 384
BseYI	CCCAGC	1 cut(s)	121
BsgI	GTGCAG	1 cut(s)	239
Bsh1236I	CGCG	1 cut(s)	177
BshFI	GGCC	4 cut(s)	95, 224, 266, 421
BsiSI	CCGG	2 cut(s)	8, 336
BslFI	GGGAC	2 cut(s)	104, 141
BslI	CCNNNNNNNGG	1 cut(s)	436
BsmAI	GTCTC	1 cut(s)	361
BsmFI	GGGAC	2 cut(s)	104, 141
BsnI	GGCC	4 cut(s)	95, 224, 266, 421
Bso31I	GGTCTC	1 cut(s)	361
Bsp119I	TTCGAA	1 cut(s)	291
Bsp143I	GATC	2 cut(s)	332, 358
BspACI	CCGC	1 cut(s)	125
BspANI	GGCC	4 cut(s)	95, 224, 266, 421
BspFNI	CGCG	1 cut(s)	177
BspMAI	CTGCAG	1 cut(s)	161
BspPI	GGATC	2 cut(s)	327, 366
BspT104I	TTCGAA	1 cut(s)	291
BspTNI	GGTCTC	1 cut(s)	361
BssECI	CCNNGG	2 cut(s)	225, 430
BssHII	GCGCGC	1 cut(s)	175
BssMI	GATC	2 cut(s)	332, 358
BssNI	GRCGYC	1 cut(s)	117
Bst2UI	CCWGG	5 cut(s)	255, 316, 353, 418, 431
Bst4CI	ACNGT	1 cut(s)	451
Bst6I	CTCTTC	1 cut(s)	288
BstACI	GRCGYC	1 cut(s)	117
BstAPI	GCANNNNNTGC	1 cut(s)	156
BstBI	TTCGAA	1 cut(s)	291
BstC8I	GCNNGC	4 cut(s)	71, 105, 177, 222
BstF5I	GGATG	4 cut(s)	267, 312, 415, 441
BstFNI	CGCG	1 cut(s)	177
BstHHI	GCGC	4 cut(s)	85, 109, 177, 179
BstKTI	GATC	2 cut(s)	335, 361
BstMAI	GTCTC	1 cut(s)	361
BstMBI	GATC	2 cut(s)	332, 358
BstMWI	GCNNNNNNNGC	3 cut(s)	150, 156, 217
BstNI	CCWGG	5 cut(s)	255, 316, 353, 418, 431
BstSCI	CCNGG	7 cut(s)	7, 253, 314, 335, 351, 416, 429
BstSFI	CTRYAG	1 cut(s)	157
BstUI	CGCG	1 cut(s)	177
BstV1I	GCAGC	4 cut(s)	143, 162, 165, 384
BstX2I	RGATCY	2 cut(s)	332, 358
BstYI	RGATCY	2 cut(s)	332, 358
BsuRI	GGCC	4 cut(s)	95, 224, 266, 421
BtrI	CACGTC	1 cut(s)	133
BtsCI	GGATG	4 cut(s)	267, 312, 415, 441
Cac8I	GCNNGC	4 cut(s)	71, 105, 177, 222
CaiI	CAGNNNCTG	1 cut(s)	156
CfoI	GCGC	4 cut(s)	85, 109, 177, 179
Cfr13I	GGNCC	1 cut(s)	257
CseI	GACGC	1 cut(s)	45
Csp6I	GTAC	1 cut(s)	235
CviAII	CATG	2 cut(s)	273, 377
CviQI	GTAC	1 cut(s)	235
DpnI	GATC	2 cut(s)	334, 360
DpnII	GATC	2 cut(s)	332, 358
DriI	GACNNNNNGTC	1 cut(s)	41
EaeI	YGGCCR	1 cut(s)	264
Eam1104I	CTCTTC	1 cut(s)	288
Eam1105I	GACNNNNNGTC	1 cut(s)	41
EarI	CTCTTC	1 cut(s)	288
Eco147I	AGGCCT	1 cut(s)	95
Eco31I	GGTCTC	1 cut(s)	361
Eco47I	GGWCC	1 cut(s)	257
EcoO109I	RGGNCCY	1 cut(s)	257
EcoRII	CCWGG	5 cut(s)	253, 314, 351, 416, 429
FaeI	CATG	2 cut(s)	276, 380
FaiI	YATR	3 cut(s)	274, 378, 454
FalI	AAGNNNNNCTT	2 cut(s)	285, 317
FaqI	GGGAC	2 cut(s)	104, 141
FatI	CATG	2 cut(s)	272, 376
FauI	CCCGC	1 cut(s)	118
Fnu4HI	GCNGC	4 cut(s)	151, 154, 157, 398
FokI	GGATG	4 cut(s)	254, 319, 422, 448
Fsp4HI	GCNGC	4 cut(s)	151, 154, 157, 398
GlaI	GCGC	4 cut(s)	84, 108, 176, 178
GluI	GCNGC	4 cut(s)	151, 154, 157, 398
GsaI	CCCAGC	1 cut(s)	125
GsuI	CTGGAG	4 cut(s)	298, 347, 374, 413
HaeIII	GGCC	4 cut(s)	95, 224, 266, 421
HapII	CCGG	2 cut(s)	8, 336
HgaI	GACGC	1 cut(s)	45
HhaI	GCGC	4 cut(s)	85, 109, 177, 179
Hin1I	GRCGYC	1 cut(s)	117
Hin1II	CATG	2 cut(s)	276, 380
Hin6I	GCGC	4 cut(s)	83, 107, 175, 177
HinP1I	GCGC	4 cut(s)	83, 107, 175, 177
HindIII	AAGCTT	1 cut(s)	209
HinfI	GANTC	4 cut(s)	48, 281, 323, 413
HpaII	CCGG	2 cut(s)	8, 336
Hpy188I	TCNGA	5 cut(s)	35, 47, 115, 306, 322
Hpy188III	TCNNGA	4 cut(s)	205, 346, 364, 407
Hpy99I	CGWCG	3 cut(s)	39, 137, 281
HpyAV	CCTTC	1 cut(s)	73
HpyCH4III	ACNGT	1 cut(s)	451
HpyCH4IV	ACGT	2 cut(s)	117, 132
HpyCH4V	TGCA	4 cut(s)	24, 159, 220, 400
HpyF10VI	GCNNNNNNNGC	3 cut(s)	150, 156, 217
HpySE526I	ACGT	2 cut(s)	117, 132
Hsp92I	GRCGYC	1 cut(s)	117
Hsp92II	CATG	2 cut(s)	276, 380
HspAI	GCGC	4 cut(s)	83, 107, 175, 177
Kzo9I	GATC	2 cut(s)	332, 358
LmnI	GCTCC	2 cut(s)	36, 432
Lsp1109I	GCAGC	4 cut(s)	143, 162, 165, 384
LweI	GCATC	2 cut(s)	48, 297
MaeII	ACGT	2 cut(s)	117, 132
MalI	GATC	2 cut(s)	334, 360
MboI	GATC	2 cut(s)	332, 358
MboII	GAAGA	4 cut(s)	193, 280, 293, 305
MflI	RGATCY	2 cut(s)	332, 358
MlsI	TGGCCA	1 cut(s)	266
MluNI	TGGCCA	1 cut(s)	266
MlyI	GAGTC	2 cut(s)	290, 317
MmeI	TCCRAC	2 cut(s)	58, 300
MnlI	CCTC	8 cut(s)	106, 156, 220, 223, 270, 289, 333, 349
Mox20I	TGGCCA	1 cut(s)	266
MroXI	GAANNNNTTC	1 cut(s)	297
MscI	TGGCCA	1 cut(s)	266
Msp20I	TGGCCA	1 cut(s)	266
MspA1I	CMGCKG	2 cut(s)	125, 156
MspI	CCGG	2 cut(s)	8, 336
MspR9I	CCNGG	7 cut(s)	9, 255, 316, 337, 353, 418, 431
MvaI	CCWGG	5 cut(s)	255, 316, 353, 418, 431
MvnI	CGCG	1 cut(s)	177
MwoI	GCNNNNNNNGC	3 cut(s)	150, 156, 217
NciI	CCSGG	2 cut(s)	9, 337
NdeII	GATC	2 cut(s)	332, 358
NlaIII	CATG	2 cut(s)	276, 380
NmeAIII	GCCGAG	1 cut(s)	250
NspV	TTCGAA	1 cut(s)	291
PauI	GCGCGC	1 cut(s)	175
PceI	AGGCCT	1 cut(s)	95
PcsI	WCGNNNNNNNCGW	1 cut(s)	141
PdmI	GAANNNNTTC	1 cut(s)	297
PfeI	GAWTC	2 cut(s)	48, 413
PflMI	CCANNNNNTGG	1 cut(s)	436
PfoI	TCCNGGA	1 cut(s)	335
PkrI	GCNGC	4 cut(s)	152, 155, 158, 399
PleI	GAGTC	2 cut(s)	289, 317
PpsI	GAGTC	2 cut(s)	289, 317
PpuMI	RGGWCCY	1 cut(s)	257
Psp5II	RGGWCCY	1 cut(s)	257
Psp6I	CCWGG	5 cut(s)	253, 314, 351, 416, 429
PspFI	CCCAGC	1 cut(s)	121
PspGI	CCWGG	5 cut(s)	253, 314, 351, 416, 429
PspPI	GGNCC	1 cut(s)	257
PspPPI	RGGWCCY	1 cut(s)	257
PstI	CTGCAG	1 cut(s)	161
PstNI	CAGNNNCTG	1 cut(s)	156
PsuI	RGATCY	2 cut(s)	332, 358
PteI	GCGCGC	1 cut(s)	175
PvuII	CAGCTG	1 cut(s)	156
RsaI	GTAC	1 cut(s)	236
RsaNI	GTAC	1 cut(s)	235
SatI	GCNGC	4 cut(s)	151, 154, 157, 398
Sau3AI	GATC	2 cut(s)	332, 358
Sau96I	GGNCC	1 cut(s)	257
SchI	GAGTC	2 cut(s)	290, 317
ScrFI	CCNGG	7 cut(s)	9, 255, 316, 337, 353, 418, 431
SfaNI	GCATC	2 cut(s)	48, 297
SfcI	CTRYAG	1 cut(s)	157
SfuI	TTCGAA	1 cut(s)	291
SinI	GGWCC	1 cut(s)	257
SmlI	CTYRAG	1 cut(s)	346
SmoI	CTYRAG	1 cut(s)	346
SseBI	AGGCCT	1 cut(s)	95
SsiI	CCGC	1 cut(s)	125
StuI	AGGCCT	1 cut(s)	95
StyD4I	CCNGG	7 cut(s)	7, 253, 314, 335, 351, 416, 429
TaaI	ACNGT	1 cut(s)	451
TaiI	ACGT	2 cut(s)	120, 135
TaqI	TCGA	1 cut(s)	291
TfiI	GAWTC	2 cut(s)	48, 413
TseI	GCWGC	4 cut(s)	150, 153, 156, 397
TspDTI	ATGAA	2 cut(s)	157, 426
TspGWI	ACGGA	1 cut(s)	41
Van91I	CCANNNNNTGG	1 cut(s)	436
VpaK11BI	GGWCC	1 cut(s)	257
XmnI	GAANNNNTTC	1 cut(s)	297
ZraI	GACGTC	1 cut(s)	118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.