Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0000313

Physical Location & Seq

Genomic Coordinates Forward (+)

45453646 .. 45455463

Gene Structure 1818 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G023210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGCAGAAGTGGCTGCAAAGCTTATGCATGCTGTTCAGTATGAAAACTATGGTGGAGGGCTTTCTGGTTTGAAGCATGTAGAGATTCCAATCCCCAGTCCTAAGAGAGATGAGGTTTTAGTGAAATTAGAAGCAGCTAGCCTAAATCCAGCTGATTGGAAAATTCAGAAAGGCACGCTGCGTCCTCTTGTTCCATGCAAATTCCCTTTTCTACCTGGATTTGATGTGGCTGGAGAGATTGTAGAGGTTGGAGAAAGAGTTAAAAAGTTCAAAGCCGGTGATAAAGTTGTGGCAGTGCTCCACCTTTTGGATGGAGGTGGACTGGCTGAGTTTGCTACAGCTAGTGAGAAATTGACAGTTGCTAGGCCCCAAGAAATTTCAGCAGCTGAAGGTGCAGGCTTACCTACTTGTGGTCTCACAGCTCACCAGGCTCTAACACAAGCTGGAGAGACCGAACTTTATGGAACTGGCCAGCTGAAGAGCATACTCATTACTGGTGCTTCTGGTGGTGTTGGCCATTATGCAGTCCAACTAGCAAAGCTGGCGAACGCTCATGTGACAGTGACTTGTGGAGCTCGTAACATTGAATTTGTCAAGAGATTGGGGGCTGATGAAGTTCTCGACTACAGTACCCCAGATGGGGCAGCTTTAAGGAGTCCATCTGGTCGAAAGTATGATGTGTTACCTTCTCCAAGAAGCAGGTGCCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N_2

Protein Analysis

236

Amino Acids

24.84

Weight (kDa)

7.69

Isoelectric Point (pI)

40.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	36 - 121	1.2e-16	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	170 - 216	4.6e-09	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13010
fragaria_vesca	FvH4_2g18240 FvH4_2g18280 FvH4_2g18310 FvH4_2g18320 FvH4_2g18330 FvH4_2g18340 FvH4_2g18350
malus_domestica	MD05G1166800.v1.1 MD05G1167200.v1.1 MD05G1167300.v1.1 MD05G1167400.v1.1 MD05G1167600.v1.1 MD05G1168000.v1.1 MD05G1168200.v1.1 MD05G1168400.v1.1 MD05G1168600.v1.1 MD05G1168700.v1.1 MD05G1168800.v1.1 MD10G1156900.v1.1 MD10G1157000.v1.1 MD10G1157100.v1.1 MD10G1157200.v1.1
prunus_persica	Prupe.8G195100_v2.0.a1 Prupe.8G195100_v2.0.a1 Prupe.8G195300_v2.0.a1 Prupe.8G195600_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G196000_v2.0.a1 Prupe.8G196000_v2.0.a1
pyrus_communis	pycom05g15560 pycom05g15600 pycom05g15610 pycom05g15620 pycom05g15630 pycom10g13550 pycom10g13570
rosa_chinensis	RchiOBHm_Chr6g0283611 RchiOBHm_Chr6g0283631 RchiOBHm_Chr6g0283641 RchiOBHm_Chr6g0283661 RchiOBHm_Chr6g0283681 RchiOBHm_Chr6g0283691 RchiOBHm_Chr6g0283701 RchiOBHm_Chr6g0283711 RchiOBHm_Chr6g0283721
rosa_laevigata	RLG00000012804 RLG00000012807 RLG00000012811
rosa_multiflora	Rmu_co8263921.1_g000001 Rmu_sc0001521.1_g000009 Rmu_sc0002906.1_g000002 Rmu_sc0002906.1_g000011 Rmu_sc0002906.1_g000013 Rmu_sc0005719.1_g000016 Rmu_sc0005719.1_g000022 Rmu_sc0029460.1_g000001
rosa_roxburghii	Rroxscaffold_7G00185240 Rroxscaffold_7G00185250 Rroxscaffold_7G00185270 Rroxscaffold_7G00185280 Rroxscaffold_7G00185290 Rroxscaffold_7G00185330 Rroxscaffold_7G00185350
rosa_rugosa	Rorug06G0156100 Rorug06G0156300 Rorug06G0156400 Rorug06G0156500 Rorug06G0156600 Rorug06G0156700 Rorug06G0156800 Rorug06G0156900 Rorug06G0157000
rosa_samantha	Rh6AG267900 Rh6AG268100 Rh6AG268200 Rh6AG268400 Rh6AG268600 Rh6AG268700 Rh6AG268900 Rh6AG269100 Rh6BG270700 Rh6BG270900 Rh6BG271000 Rh6BG271200 Rh6BG271400 Rh6BG271500 Rh6CG270200 Rh6CG270400 Rh6CG270500 Rh6CG270800 Rh6CG270900 Rh6CG271000 Rh6CG271100 Rh6CG271300 Rh6DG263900 Rh6DG264100 Rh6DG264200 Rh6DG264400 Rh6DG264600 Rh6DG264800 Rh6DG265200
rosa_wichuraiana	Rw6G023210 Rw6G023220 Rw6G023230 Rw6G023240 Rw6G023250 Rw6G023260 Rw6G023270 Rw6G023280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	690
Acc36I	ACCTGC	1 cut(s)	690
AccB1I	GGYRCC	1 cut(s)	702
AccB7I	CCANNNNNTGG	1 cut(s)	307
AcoI	YGGCCR	2 cut(s)	469, 514
AcsI	RAATTY	4 cut(s)	162, 200, 375, 587
AcuI	CTGAAG	2 cut(s)	408, 497
AfaI	GTAC	1 cut(s)	631
AfiI	CCNNNNNNNGG	4 cut(s)	307, 410, 639, 640
AgsI	TTSAA	3 cut(s)	73, 271, 587
AjnI	CCWGG	2 cut(s)	214, 426
Alw21I	GWGCWC	2 cut(s)	300, 577
Alw26I	GTCTC	2 cut(s)	419, 443
AlwNI	CAGNNNCTG	1 cut(s)	386
AoxI	GGCC	3 cut(s)	365, 469, 514
ApeKI	GCWGC	5 cut(s)	14, 134, 178, 383, 644
ApoI	RAATTY	4 cut(s)	162, 200, 375, 587
AspS9I	GGNCC	1 cut(s)	366
AsuHPI	GGTGA	2 cut(s)	290, 416
AsuNHI	GCTAGC	1 cut(s)	137
BaeI	ACNNNNGTAYC	2 cut(s)	613, 646
BalI	TGGCCA	2 cut(s)	471, 516
BanI	GGYRCC	1 cut(s)	702
BanII	GRGCYC	1 cut(s)	577
Bbv12I	GWGCWC	2 cut(s)	300, 577
BbvI	GCAGC	4 cut(s)	146, 165, 395, 656
BccI	CCATC	3 cut(s)	305, 632, 667
BciT130I	CCWGG	2 cut(s)	216, 428
BcoDI	GTCTC	2 cut(s)	419, 443
BfaI	CTAG	4 cut(s)	138, 342, 363, 533
BfmI	CTRYAG	2 cut(s)	336, 625
BfuAI	ACCTGC	1 cut(s)	690
BisI	GCNGC	5 cut(s)	15, 135, 179, 384, 645
BlsI	GCNGC	5 cut(s)	16, 136, 180, 385, 646
Bme1390I	CCNGG	2 cut(s)	216, 428
BmgT120I	GGNCC	1 cut(s)	366
BmiI	GGNNCC	2 cut(s)	368, 704
BmrFI	CCNGG	2 cut(s)	216, 428
BmrI	ACTGGG	1 cut(s)	90
BmtI	GCTAGC	1 cut(s)	141
BmuI	ACTGGG	1 cut(s)	90
BpmI	CTGGAG	2 cut(s)	252, 465
BsaBI	GATNNNNATC	1 cut(s)	89
BsaI	GGTCTC	2 cut(s)	419, 443
BsaXI	ACNNNNNCTCC	4 cut(s)	225, 243, 255, 273
Bsc4I	CCNNNNNNNGG	4 cut(s)	307, 410, 639, 640
Bse118I	RCCGGY	1 cut(s)	275
Bse1I	ACTGG	4 cut(s)	96, 327, 472, 499
Bse8I	GATNNNNATC	1 cut(s)	89
BseBI	CCWGG	2 cut(s)	216, 428
BseGI	GGATG	1 cut(s)	316
BseJI	GATNNNNATC	1 cut(s)	89
BseLI	CCNNNNNNNGG	4 cut(s)	307, 410, 639, 640
BseMII	CTCAG	1 cut(s)	318
BseNI	ACTGG	4 cut(s)	96, 327, 472, 499
BseXI	GCAGC	4 cut(s)	146, 165, 395, 656
BsgI	GTGCAG	1 cut(s)	414
BshFI	GGCC	3 cut(s)	367, 471, 516
BshNI	GGYRCC	1 cut(s)	702
BsiHKAI	GWGCWC	2 cut(s)	300, 577
BsiSI	CCGG	1 cut(s)	276
BslI	CCNNNNNNNGG	4 cut(s)	307, 410, 639, 640
BsmAI	GTCTC	2 cut(s)	419, 443
BsnI	GGCC	3 cut(s)	367, 471, 516
Bso31I	GGTCTC	2 cut(s)	419, 443
Bsp1286I	GDGCHC	2 cut(s)	300, 577
BspANI	GGCC	3 cut(s)	367, 471, 516
BspCNI	CTCAG	1 cut(s)	319
BspLI	GGNNCC	2 cut(s)	368, 704
BspMI	ACCTGC	1 cut(s)	690
BspOI	GCTAGC	1 cut(s)	141
BspQI	GCTCTTC	1 cut(s)	473
BspT107I	GGYRCC	1 cut(s)	702
BspTNI	GGTCTC	2 cut(s)	419, 443
BsrFI	RCCGGY	1 cut(s)	275
BsrI	ACTGG	4 cut(s)	96, 327, 472, 499
BssAI	RCCGGY	1 cut(s)	275
Bst2UI	CCWGG	2 cut(s)	216, 428
Bst4CI	ACNGT	3 cut(s)	358, 562, 629
Bst6I	CTCTTC	1 cut(s)	473
BstC8I	GCNNGC	6 cut(s)	30, 139, 176, 397, 473, 543
BstDEI	CTNAG	2 cut(s)	102, 327
BstF5I	GGATG	1 cut(s)	316
BstMAI	GTCTC	2 cut(s)	419, 443
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 332, 392, 428, 542
BstNI	CCWGG	2 cut(s)	216, 428
BstNSI	RCATGY	2 cut(s)	32, 80
BstSCI	CCNGG	2 cut(s)	214, 426
BstSFI	CTRYAG	2 cut(s)	336, 625
BstV1I	GCAGC	4 cut(s)	146, 165, 395, 656
BstXI	CCANNNNNNTGG	1 cut(s)	156
BsuRI	GGCC	3 cut(s)	367, 471, 516
BtsCI	GGATG	1 cut(s)	316
BtsI	GCAGTG	1 cut(s)	300
BtsIMutI	CAGTG	2 cut(s)	300, 567
BveI	ACCTGC	1 cut(s)	690
Cac8I	GCNNGC	6 cut(s)	30, 139, 176, 397, 473, 543
CaiI	CAGNNNCTG	1 cut(s)	386
Cfr10I	RCCGGY	1 cut(s)	275
Cfr13I	GGNCC	1 cut(s)	366
CseI	GACGC	1 cut(s)	170
Csp6I	GTAC	1 cut(s)	630
CviAII	CATG	4 cut(s)	29, 77, 195, 554
CviQI	GTAC	1 cut(s)	630
DdeI	CTNAG	2 cut(s)	102, 327
EaeI	YGGCCR	2 cut(s)	469, 514
Eam1104I	CTCTTC	1 cut(s)	473
EarI	CTCTTC	1 cut(s)	473
Ecl136II	GAGCTC	1 cut(s)	575
Eco24I	GRGCYC	1 cut(s)	577
Eco31I	GGTCTC	2 cut(s)	419, 443
Eco53kI	GAGCTC	1 cut(s)	575
Eco57I	CTGAAG	2 cut(s)	408, 497
EcoICRI	GAGCTC	1 cut(s)	575
EcoO109I	RGGNCCY	1 cut(s)	366
EcoRII	CCWGG	2 cut(s)	214, 426
EcoT22I	ATGCAT	1 cut(s)	30
EcoT38I	GRGCYC	1 cut(s)	577
FaeI	CATG	4 cut(s)	32, 80, 198, 557
FatI	CATG	4 cut(s)	28, 76, 194, 553
Fnu4HI	GCNGC	5 cut(s)	15, 135, 179, 384, 645
FokI	GGATG	1 cut(s)	323
FriOI	GRGCYC	1 cut(s)	577
Fsp4HI	GCNGC	5 cut(s)	15, 135, 179, 384, 645
FspBI	CTAG	4 cut(s)	138, 342, 363, 533
GluI	GCNGC	5 cut(s)	15, 135, 179, 384, 645
GsuI	CTGGAG	2 cut(s)	252, 465
HaeIII	GGCC	3 cut(s)	367, 471, 516
HapII	CCGG	1 cut(s)	276
HgaI	GACGC	1 cut(s)	170
Hin1II	CATG	4 cut(s)	32, 80, 198, 557
HindIII	AAGCTT	1 cut(s)	20
HinfI	GANTC	2 cut(s)	85, 655
HpaII	CCGG	1 cut(s)	276
HphI	GGTGA	2 cut(s)	290, 416
Hpy166II	GTNNAC	1 cut(s)	320
Hpy188I	TCNGA	1 cut(s)	168
Hpy188III	TCNNGA	2 cut(s)	595, 620
Hpy8I	GTNNAC	1 cut(s)	320
HpyAV	CCTTC	2 cut(s)	383, 696
HpyCH4III	ACNGT	3 cut(s)	358, 562, 629
HpyCH4V	TGCA	5 cut(s)	17, 28, 198, 395, 524
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 332, 392, 428, 542
HpyF3I	CTNAG	2 cut(s)	102, 327
Hsp92II	CATG	4 cut(s)	32, 80, 198, 557
LguI	GCTCTTC	1 cut(s)	473
LmnI	GCTCC	2 cut(s)	303, 572
Lsp1109I	GCAGC	4 cut(s)	146, 165, 395, 656
MaeI	CTAG	4 cut(s)	138, 342, 363, 533
MaeIII	GTNAC	4 cut(s)	556, 562, 578, 681
MboII	GAAGA	1 cut(s)	490
MhlI	GDGCHC	2 cut(s)	300, 577
MlsI	TGGCCA	2 cut(s)	471, 516
MluCI	AATT	6 cut(s)	125, 162, 200, 350, 375, 587
MluNI	TGGCCA	2 cut(s)	471, 516
MlyI	GAGTC	1 cut(s)	664
MmeI	TCCRAC	2 cut(s)	229, 553
MnlI	CCTC	5 cut(s)	50, 106, 195, 238, 308
Mox20I	TGGCCA	2 cut(s)	471, 516
Mph1103I	ATGCAT	1 cut(s)	30
MscI	TGGCCA	2 cut(s)	471, 516
MseI	TTAA	2 cut(s)	261, 650
Msp20I	TGGCCA	2 cut(s)	471, 516
MspA1I	CMGCKG	3 cut(s)	152, 386, 475
MspI	CCGG	1 cut(s)	276
MspR9I	CCNGG	2 cut(s)	216, 428
MvaI	CCWGG	2 cut(s)	216, 428
MwoI	GCNNNNNNNGC	5 cut(s)	11, 332, 392, 428, 542
NheI	GCTAGC	1 cut(s)	137
NlaIII	CATG	4 cut(s)	32, 80, 198, 557
NlaIV	GGNNCC	2 cut(s)	368, 704
NmuCI	GTSAC	2 cut(s)	556, 562
NsiI	ATGCAT	1 cut(s)	30
NspI	RCATGY	2 cut(s)	32, 80
PaeI	GCATGC	1 cut(s)	32
PaqCI	CACCTGC	1 cut(s)	690
PciSI	GCTCTTC	1 cut(s)	473
PfeI	GAWTC	1 cut(s)	85
PflMI	CCANNNNNTGG	1 cut(s)	307
PkrI	GCNGC	5 cut(s)	16, 136, 180, 385, 646
PleI	GAGTC	1 cut(s)	663
PpsI	GAGTC	1 cut(s)	663
Psp124BI	GAGCTC	1 cut(s)	577
Psp6I	CCWGG	2 cut(s)	214, 426
PspGI	CCWGG	2 cut(s)	214, 426
PspN4I	GGNNCC	2 cut(s)	368, 704
PspPI	GGNCC	1 cut(s)	366
PstNI	CAGNNNCTG	1 cut(s)	386
PvuII	CAGCTG	3 cut(s)	152, 386, 475
RsaI	GTAC	1 cut(s)	631
RsaNI	GTAC	1 cut(s)	630
SacI	GAGCTC	1 cut(s)	577
SapI	GCTCTTC	1 cut(s)	473
SaqAI	TTAA	2 cut(s)	261, 650
SatI	GCNGC	5 cut(s)	15, 135, 179, 384, 645
Sau96I	GGNCC	1 cut(s)	366
SchI	GAGTC	1 cut(s)	664
ScrFI	CCNGG	2 cut(s)	216, 428
SduI	GDGCHC	2 cut(s)	300, 577
SfcI	CTRYAG	2 cut(s)	336, 625
SphI	GCATGC	1 cut(s)	32
Sse9I	AATT	6 cut(s)	125, 162, 200, 350, 375, 587
SspMI	CTAG	4 cut(s)	138, 342, 363, 533
SstI	GAGCTC	1 cut(s)	577
StyD4I	CCNGG	2 cut(s)	214, 426
TaaI	ACNGT	3 cut(s)	358, 562, 629
TaqI	TCGA	2 cut(s)	621, 667
TaqII	GACCGA	1 cut(s)	467
TasI	AATT	6 cut(s)	125, 162, 200, 350, 375, 587
TfiI	GAWTC	1 cut(s)	85
Tru1I	TTAA	2 cut(s)	261, 650
Tru9I	TTAA	2 cut(s)	261, 650
TscAI	CASTG	2 cut(s)	300, 567
TseFI	GTSAC	2 cut(s)	556, 562
TseI	GCWGC	5 cut(s)	14, 134, 178, 383, 644
Tsp45I	GTSAC	2 cut(s)	556, 562
TspDTI	ATGAA	2 cut(s)	57, 627
TspRI	CASTG	2 cut(s)	300, 567
Van91I	CCANNNNNTGG	1 cut(s)	307
XapI	RAATTY	4 cut(s)	162, 200, 375, 587
XceI	RCATGY	2 cut(s)	32, 80
XcmI	CCANNNNNNNNNTGG	1 cut(s)	308
XspI	CTAG	4 cut(s)	138, 342, 363, 533
Zsp2I	ATGCAT	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.