FvH4_2g18330

Quinone-oxidoreductase homolog, chloroplastic

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Forward (+)
15729408 .. 15730648
1241 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g18330.t1

Sequence Viewer

Length: 789 bp
ATGGATCTCAATGAGACTGTTATTAGTGATGTGGCCGGAGAGGTTGTCGAGATTGGACAGGAAGTTCGAAAGTTCAAAGTGGGCGACAAAGTTGTGGCGATTCTCAGCCTCTATGTGAGTGTTCTAATCTTCCTTCAGAGCTTAACGGTTCCTAGGCCGGCTGAAGTTTCAGCAGCTGAAGCTGCAGGGTTACCTGTTGCTGGAATCACAGCTCACAAGTGTCTTACTGAAGCAGCAGGAATCAAGCTGGACAGCACAGGCCCGGCGAAGAACATATTGGTTACTGCTGCCTCTGGAGGTGTAGGACACTATGCAGTCCAACTAGCTAAGCTGGGAAACCATCATGTCACAGCCACTTGTGGAGCTCGTAACATTGATTTCGTCAAGAGCTTAGGCGCTGACGAGATTCTTGACTACAAGACTCCTGAAGGGGCAGCCCTGAAGAGCCCTTCTGGTCGGAAATATGATGTTGTGATCGACTGTACAACGGGCATTCCCTGGTCCATTTTGAAGCGGAATTTGAGTCCAAATGGAAAGGCCGTAGTCATTACATTCGGGCCAAAGGCTGTGCTTACTTTCGCTCTACAGAAACTCACCTTCTCCAAGCAGAAGCTGGTGCCATTGCTGGTGTTTCGCAAGGCTGAGAACCTGGAATATCTTGTTAAGTTGGTAAAGGAAGGAAAGTTGAAGACGGTGTTTGACTCGAGGCATCCTCTGAGCAAGGCTGAAGATGCTTGGGGTAAGAGCATCGGCGGCCACGCTACCGGGAAGATCATTGTGGAACCTTAA

Protein Analysis

263

Amino Acids

27.79

Weight (kDa)

9.21

Isoelectric Point (pI)

35.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_zinc_N PF00107 100 - 224 9.9e-15 Zinc-binding dehydrogenase
ADH_zinc_N_2 PF13602 131 - 260 3.3e-21 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000313)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G13010
fragaria_vesca FvH4_2g18240 FvH4_2g18280 FvH4_2g18310 FvH4_2g18320 FvH4_2g18330 FvH4_2g18340 FvH4_2g18350
malus_domestica MD05G1166800.v1.1 MD05G1167200.v1.1 MD05G1167300.v1.1 MD05G1167400.v1.1 MD05G1167600.v1.1 MD05G1168000.v1.1 MD05G1168200.v1.1 MD05G1168400.v1.1 MD05G1168600.v1.1 MD05G1168700.v1.1 MD05G1168800.v1.1 MD10G1156900.v1.1 MD10G1157000.v1.1 MD10G1157100.v1.1 MD10G1157200.v1.1
prunus_persica Prupe.8G195100_v2.0.a1 Prupe.8G195100_v2.0.a1 Prupe.8G195300_v2.0.a1 Prupe.8G195600_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G196000_v2.0.a1 Prupe.8G196000_v2.0.a1
pyrus_communis pycom05g15560 pycom05g15600 pycom05g15610 pycom05g15620 pycom05g15630 pycom10g13550 pycom10g13570
rosa_chinensis RchiOBHm_Chr6g0283611 RchiOBHm_Chr6g0283631 RchiOBHm_Chr6g0283641 RchiOBHm_Chr6g0283661 RchiOBHm_Chr6g0283681 RchiOBHm_Chr6g0283691 RchiOBHm_Chr6g0283701 RchiOBHm_Chr6g0283711 RchiOBHm_Chr6g0283721
rosa_laevigata RLG00000012804 RLG00000012807 RLG00000012811
rosa_multiflora Rmu_co8263921.1_g000001 Rmu_sc0001521.1_g000009 Rmu_sc0002906.1_g000002 Rmu_sc0002906.1_g000011 Rmu_sc0002906.1_g000013 Rmu_sc0005719.1_g000016 Rmu_sc0005719.1_g000022 Rmu_sc0029460.1_g000001
rosa_roxburghii Rroxscaffold_7G00185240 Rroxscaffold_7G00185250 Rroxscaffold_7G00185270 Rroxscaffold_7G00185280 Rroxscaffold_7G00185290 Rroxscaffold_7G00185330 Rroxscaffold_7G00185350
rosa_rugosa Rorug06G0156100 Rorug06G0156300 Rorug06G0156400 Rorug06G0156500 Rorug06G0156600 Rorug06G0156700 Rorug06G0156800 Rorug06G0156900 Rorug06G0157000
rosa_samantha Rh6AG267900 Rh6AG268100 Rh6AG268200 Rh6AG268400 Rh6AG268600 Rh6AG268700 Rh6AG268900 Rh6AG269100 Rh6BG270700 Rh6BG270900 Rh6BG271000 Rh6BG271200 Rh6BG271400 Rh6BG271500 Rh6CG270200 Rh6CG270400 Rh6CG270500 Rh6CG270800 Rh6CG270900 Rh6CG271000 Rh6CG271100 Rh6CG271300 Rh6DG263900 Rh6DG264100 Rh6DG264200 Rh6DG264400 Rh6DG264600 Rh6DG264800 Rh6DG265200
rosa_wichuraiana Rw6G023210 Rw6G023220 Rw6G023230 Rw6G023240 Rw6G023250 Rw6G023260 Rw6G023270 Rw6G023280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 616
AciI CCGC 2 cut(s) 514, 753
AclWI GGATC 1 cut(s) 12
AcoI YGGCCR 2 cut(s) 33, 754
AcsI RAATTY 1 cut(s) 517
AcuI CTGAAG 7 cut(s) 119, 183, 198, 249, 447, 461, 747
AfaI GTAC 1 cut(s) 484
AfiI CCNNNNNNNGG 1 cut(s) 200
AgsI TTSAA 3 cut(s) 76, 511, 688
AjnI CCWGG 2 cut(s) 497, 648
AjuI GAANNNNNNNTTGG 2 cut(s) 260, 292
AloI GAACNNNNNNTCC 2 cut(s) 48, 80
Alw21I GWGCWC 1 cut(s) 367
Alw26I GTCTC 1 cut(s) 8
AlwI GGATC 1 cut(s) 12
AlwNI CAGNNNCTG 2 cut(s) 176, 613
Ama87I CYCGRG 1 cut(s) 703
AoxI GGCC 6 cut(s) 33, 155, 259, 537, 557, 754
ApeKI GCWGC 5 cut(s) 173, 182, 233, 287, 434
ApoI RAATTY 1 cut(s) 517
ArsI GACNNNNNNTTYG 2 cut(s) 48, 80
AspA2I CCTAGG 1 cut(s) 152
AspLEI GCGC 1 cut(s) 398
AspS9I GGNCC 3 cut(s) 260, 501, 557
AsuC2I CCSGG 2 cut(s) 263, 766
AsuHPI GGTGA 1 cut(s) 586
AsuII TTCGAA 1 cut(s) 67
AvaI CYCGRG 1 cut(s) 703
AvaII GGWCC 1 cut(s) 501
AvrII CCTAGG 1 cut(s) 152
BanI GGYRCC 1 cut(s) 616
BanII GRGCYC 2 cut(s) 367, 449
BbsI GAAGAC 1 cut(s) 695
Bbv12I GWGCWC 1 cut(s) 367
BbvI GCAGC 5 cut(s) 169, 185, 245, 274, 446
BccI CCATC 1 cut(s) 348
BceAI ACGGC 1 cut(s) 524
BciT130I CCWGG 2 cut(s) 499, 650
BcnI CCSGG 2 cut(s) 263, 766
BcoDI GTCTC 1 cut(s) 8
BfaI CTAG 2 cut(s) 153, 323
BfmI CTRYAG 2 cut(s) 183, 584
BfoI RGCGCY 1 cut(s) 399
BisI GCNGC 6 cut(s) 174, 183, 234, 288, 435, 754
BlnI CCTAGG 1 cut(s) 152
BlpI GCTNAGC 1 cut(s) 327
BlsI GCNGC 6 cut(s) 175, 184, 235, 289, 436, 755
Bme1390I CCNGG 4 cut(s) 263, 499, 650, 766
Bme18I GGWCC 1 cut(s) 501
BmeT110I CYCGRG 1 cut(s) 703
BmgT120I GGNCC 3 cut(s) 260, 501, 557
BmiI GGNNCC 3 cut(s) 150, 618, 783
BmrFI CCNGG 4 cut(s) 263, 499, 650, 766
BmsI GCATC 3 cut(s) 718, 721, 756
BpiI GAAGAC 1 cut(s) 695
BplI GAGNNNNNCTC 2 cut(s) 697, 729
BpmI CTGGAG 1 cut(s) 315
Bpu10I CCTNAGC 1 cut(s) 391
Bpu1102I GCTNAGC 1 cut(s) 327
Bpu14I TTCGAA 1 cut(s) 67
BpuMI CCSGG 2 cut(s) 263, 766
BsaJI CCNNGG 2 cut(s) 152, 497
BsaXI ACNNNNNCTCC 2 cut(s) 30, 60
Bsc4I CCNNNNNNNGG 1 cut(s) 200
Bse118I RCCGGY 1 cut(s) 157
Bse3DI GCAATG 1 cut(s) 620
BseBI CCWGG 2 cut(s) 499, 650
BseDI CCNNGG 2 cut(s) 152, 497
BseGI GGATG 1 cut(s) 709
BseLI CCNNNNNNNGG 1 cut(s) 200
BseMI GCAATG 1 cut(s) 620
BseMII CTCAG 3 cut(s) 118, 633, 707
BseXI GCAGC 5 cut(s) 169, 185, 245, 274, 446
BseYI CCCAGC 1 cut(s) 331
BshFI GGCC 6 cut(s) 35, 157, 261, 539, 559, 756
BshNI GGYRCC 1 cut(s) 616
BsiHKAI GWGCWC 1 cut(s) 367
BsiHKCI CYCGRG 1 cut(s) 703
BsiSI CCGG 4 cut(s) 36, 158, 263, 765
BslI CCNNNNNNNGG 1 cut(s) 200
BsmAI GTCTC 1 cut(s) 8
BsmI GAATGC 1 cut(s) 492
BsnI GGCC 6 cut(s) 35, 157, 261, 539, 559, 756
BsoBI CYCGRG 1 cut(s) 703
Bsp119I TTCGAA 1 cut(s) 67
Bsp1286I GDGCHC 2 cut(s) 367, 449
Bsp1407I TGTACA 1 cut(s) 482
Bsp143I GATC 3 cut(s) 4, 474, 771
Bsp1720I GCTNAGC 1 cut(s) 327
BspACI CCGC 2 cut(s) 514, 753
BspANI GGCC 6 cut(s) 35, 157, 261, 539, 559, 756
BspCNI CTCAG 3 cut(s) 117, 634, 708
BspLI GGNNCC 3 cut(s) 150, 618, 783
BspMAI CTGCAG 1 cut(s) 187
BspPI GGATC 1 cut(s) 12
BspQI GCTCTTC 1 cut(s) 437
BspT104I TTCGAA 1 cut(s) 67
BspT107I GGYRCC 1 cut(s) 616
BsrDI GCAATG 1 cut(s) 620
BsrFI RCCGGY 1 cut(s) 157
BsrGI TGTACA 1 cut(s) 482
BssAI RCCGGY 1 cut(s) 157
BssECI CCNNGG 2 cut(s) 152, 497
BssMI GATC 3 cut(s) 4, 474, 771
BssT1I CCWWGG 1 cut(s) 152
Bst2UI CCWGG 2 cut(s) 499, 650
Bst4CI ACNGT 4 cut(s) 19, 148, 482, 694
Bst6I CTCTTC 1 cut(s) 437
BstAUI TGTACA 1 cut(s) 482
BstBI TTCGAA 1 cut(s) 67
BstC8I GCNNGC 1 cut(s) 159
BstDEI CTNAG 5 cut(s) 104, 327, 391, 642, 716
BstEII GGTNACC 1 cut(s) 189
BstF5I GGATG 1 cut(s) 709
BstH2I RGCGCY 1 cut(s) 399
BstHHI GCGC 1 cut(s) 398
BstKTI GATC 3 cut(s) 7, 477, 774
BstMAI GTCTC 1 cut(s) 8
BstMBI GATC 3 cut(s) 4, 474, 771
BstMWI GCNNNNNNNGC 4 cut(s) 179, 182, 731, 753
BstNI CCWGG 2 cut(s) 499, 650
BstPI GGTNACC 1 cut(s) 189
BstSCI CCNGG 4 cut(s) 261, 497, 648, 764
BstSFI CTRYAG 2 cut(s) 183, 584
BstV1I GCAGC 5 cut(s) 169, 185, 245, 274, 446
BstV2I GAAGAC 1 cut(s) 695
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BsuRI GGCC 6 cut(s) 35, 157, 261, 539, 559, 756
BtsCI GGATG 1 cut(s) 709
Cac8I GCNNGC 1 cut(s) 159
CaiI CAGNNNCTG 2 cut(s) 176, 613
CfoI GCGC 1 cut(s) 398
Cfr10I RCCGGY 1 cut(s) 157
Cfr13I GGNCC 3 cut(s) 260, 501, 557
Csp6I GTAC 1 cut(s) 483
CviAII CATG 1 cut(s) 344
CviQI GTAC 1 cut(s) 483
DdeI CTNAG 5 cut(s) 104, 327, 391, 642, 716
DpnI GATC 3 cut(s) 6, 476, 773
DpnII GATC 3 cut(s) 4, 474, 771
EaeI YGGCCR 2 cut(s) 33, 754
Eam1104I CTCTTC 1 cut(s) 437
EarI CTCTTC 1 cut(s) 437
Ecl136II GAGCTC 1 cut(s) 365
Eco130I CCWWGG 1 cut(s) 152
Eco24I GRGCYC 2 cut(s) 367, 449
Eco47I GGWCC 1 cut(s) 501
Eco53kI GAGCTC 1 cut(s) 365
Eco57I CTGAAG 7 cut(s) 119, 183, 198, 249, 447, 461, 747
Eco88I CYCGRG 1 cut(s) 703
Eco91I GGTNACC 1 cut(s) 189
EcoICRI GAGCTC 1 cut(s) 365
EcoO65I GGTNACC 1 cut(s) 189
EcoRII CCWGG 2 cut(s) 497, 648
EcoT14I CCWWGG 1 cut(s) 152
EcoT38I GRGCYC 2 cut(s) 367, 449
ErhI CCWWGG 1 cut(s) 152
FaeI CATG 1 cut(s) 347
FaiI YATR 5 cut(s) 114, 275, 312, 345, 465
FatI CATG 1 cut(s) 343
Fnu4HI GCNGC 6 cut(s) 174, 183, 234, 288, 435, 754
FokI GGATG 1 cut(s) 696
FriOI GRGCYC 2 cut(s) 367, 449
Fsp4HI GCNGC 6 cut(s) 174, 183, 234, 288, 435, 754
FspBI CTAG 2 cut(s) 153, 323
GlaI GCGC 1 cut(s) 397
GluI GCNGC 6 cut(s) 174, 183, 234, 288, 435, 754
GsaI CCCAGC 1 cut(s) 335
GsuI CTGGAG 1 cut(s) 315
HaeII RGCGCY 1 cut(s) 399
HaeIII GGCC 6 cut(s) 35, 157, 261, 539, 559, 756
HapII CCGG 4 cut(s) 36, 158, 263, 765
HhaI GCGC 1 cut(s) 398
Hin1II CATG 1 cut(s) 347
Hin6I GCGC 1 cut(s) 396
HinP1I GCGC 1 cut(s) 396
HinfI GANTC 7 cut(s) 100, 204, 240, 406, 421, 523, 701
HpaII CCGG 4 cut(s) 36, 158, 263, 765
HphI GGTGA 1 cut(s) 586
Hpy188I TCNGA 3 cut(s) 138, 459, 717
Hpy188III TCNNGA 5 cut(s) 49, 294, 385, 410, 425
HpyAV CCTTC 5 cut(s) 143, 422, 459, 607, 671
HpyCH4III ACNGT 4 cut(s) 19, 148, 482, 694
HpyCH4V TGCA 2 cut(s) 185, 314
HpyF10VI GCNNNNNNNGC 4 cut(s) 179, 182, 731, 753
HpyF3I CTNAG 5 cut(s) 104, 327, 391, 642, 716
Hsp92II CATG 1 cut(s) 347
HspAI GCGC 1 cut(s) 396
KroI GCCGGC 1 cut(s) 157
KroNI GCCGGC 1 cut(s) 159
Kzo9I GATC 3 cut(s) 4, 474, 771
LguI GCTCTTC 1 cut(s) 437
LmnI GCTCC 1 cut(s) 362
Lsp1109I GCAGC 5 cut(s) 169, 185, 245, 274, 446
LweI GCATC 3 cut(s) 718, 721, 756
MaeI CTAG 2 cut(s) 153, 323
MaeIII GTNAC 4 cut(s) 189, 280, 346, 368
MalI GATC 3 cut(s) 6, 476, 773
MboI GATC 3 cut(s) 4, 474, 771
MboII GAAGA 6 cut(s) 121, 280, 454, 700, 740, 781
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 2 cut(s) 367, 449
MluCI AATT 1 cut(s) 517
MlyI GAGTC 3 cut(s) 415, 532, 695
MmeI TCCRAC 2 cut(s) 343, 437
MnlI CCTC 6 cut(s) 34, 119, 290, 301, 699, 723
MroNI GCCGGC 1 cut(s) 157
MseI TTAA 3 cut(s) 143, 663, 787
MspA1I CMGCKG 1 cut(s) 176
MspI CCGG 4 cut(s) 36, 158, 263, 765
MspR9I CCNGG 4 cut(s) 263, 499, 650, 766
Mva1269I GAATGC 1 cut(s) 492
MvaI CCWGG 2 cut(s) 499, 650
MwoI GCNNNNNNNGC 4 cut(s) 179, 182, 731, 753
NaeI GCCGGC 1 cut(s) 159
NciI CCSGG 2 cut(s) 263, 766
NdeII GATC 3 cut(s) 4, 474, 771
NgoMIV GCCGGC 1 cut(s) 157
NlaIII CATG 1 cut(s) 347
NlaIV GGNNCC 3 cut(s) 150, 618, 783
NmuCI GTSAC 1 cut(s) 346
NspV TTCGAA 1 cut(s) 67
PaeR7I CTCGAG 1 cut(s) 703
PciSI GCTCTTC 1 cut(s) 437
PctI GAATGC 1 cut(s) 492
PdiI GCCGGC 1 cut(s) 159
PfeI GAWTC 4 cut(s) 100, 204, 240, 406
PkrI GCNGC 6 cut(s) 175, 184, 235, 289, 436, 755
PleI GAGTC 3 cut(s) 415, 531, 695
PpsI GAGTC 3 cut(s) 415, 531, 695
Psp124BI GAGCTC 1 cut(s) 367
Psp6I CCWGG 2 cut(s) 497, 648
PspEI GGTNACC 1 cut(s) 189
PspFI CCCAGC 1 cut(s) 331
PspGI CCWGG 2 cut(s) 497, 648
PspN4I GGNNCC 3 cut(s) 150, 618, 783
PspPI GGNCC 3 cut(s) 260, 501, 557
PspXI VCTCGAGB 1 cut(s) 703
PstI CTGCAG 1 cut(s) 187
PstNI CAGNNNCTG 2 cut(s) 176, 613
PsuI RGATCY 1 cut(s) 4
PvuII CAGCTG 1 cut(s) 176
RsaI GTAC 1 cut(s) 484
RsaNI GTAC 1 cut(s) 483
SacI GAGCTC 1 cut(s) 367
SapI GCTCTTC 1 cut(s) 437
SaqAI TTAA 3 cut(s) 143, 663, 787
SatI GCNGC 6 cut(s) 174, 183, 234, 288, 435, 754
Sau3AI GATC 3 cut(s) 4, 474, 771
Sau96I GGNCC 3 cut(s) 260, 501, 557
SchI GAGTC 3 cut(s) 415, 532, 695
ScrFI CCNGG 4 cut(s) 263, 499, 650, 766
SduI GDGCHC 2 cut(s) 367, 449
SfaNI GCATC 3 cut(s) 718, 721, 756
SfcI CTRYAG 2 cut(s) 183, 584
Sfr274I CTCGAG 1 cut(s) 703
SfuI TTCGAA 1 cut(s) 67
SinI GGWCC 1 cut(s) 501
SlaI CTCGAG 1 cut(s) 703
SmlI CTYRAG 1 cut(s) 703
SmoI CTYRAG 1 cut(s) 703
Sse9I AATT 1 cut(s) 517
SsiI CCGC 2 cut(s) 514, 753
SspMI CTAG 2 cut(s) 153, 323
SstI GAGCTC 1 cut(s) 367
StyD4I CCNGG 4 cut(s) 261, 497, 648, 764
StyI CCWWGG 1 cut(s) 152
TaaI ACNGT 4 cut(s) 19, 148, 482, 694
TaqI TCGA 4 cut(s) 48, 67, 477, 704
TasI AATT 1 cut(s) 517
TatI WGTACW 1 cut(s) 482
TauI GCSGC 1 cut(s) 756
TfiI GAWTC 4 cut(s) 100, 204, 240, 406
Tru1I TTAA 3 cut(s) 143, 663, 787
Tru9I TTAA 3 cut(s) 143, 663, 787
TseFI GTSAC 1 cut(s) 346
TseI GCWGC 5 cut(s) 173, 182, 233, 287, 434
Tsp45I GTSAC 1 cut(s) 346
VpaK11BI GGWCC 1 cut(s) 501
XapI RAATTY 1 cut(s) 517
XcmI CCANNNNNNNNNTGG 1 cut(s) 610
XhoI CTCGAG 1 cut(s) 703
XmaJI CCTAGG 1 cut(s) 152
XspI CTAG 2 cut(s) 153, 323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.