Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0000313

Physical Location & Seq

Genomic Coordinates Forward (+)

15694506 .. 15695283

Gene Structure 778 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g18280.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGCCCACTAAGGTTGATGGAACAAACGAGCAGAAGAACATACTCATTACCGGTGCCTCTGGTAACGTCGGTCTTTATGCAATCCAACTAGCAAAGCTCGGAAATGCTCATGTCACTGTCACATGTGGAGATCGTAACATTGAACTTGTCAAGAGCTTAGGGGCAGATGAGGTTCTTGACTACAAGACCCCTGAAGGGGAAAATGTCAAGAGCCCATCTGGTCGGAAATATGATTTCGTGATCCATTCTTCATCGAAAGCAATTCTTTGGTCAGTCTTTGAGCCGAACTTGAGCTCAAATGGGAAGGTTATAGACCTTACTGCCAACCTGAGCTGCTTCTTTACATTTGTTCTTAAGAAACTCACCTTCTCCAAGAAGACACTGGTGCCATTGATCATAAATGGGAAGGGTGAGAACCTGGATTTTCTTGTTAAGTTGGTGAAGGAAGGAAAGCTCAAGACAGTGATTGACTCGACTTATATTTTAAGCAAGGCTGAAGATGCTTGGGCTTGGAGACTTGATGGCTGCAATACTGGGAAGATCATTGTGGAGCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N_2

Protein Analysis

186

Amino Acids

20.23

Weight (kDa)

8.67

Isoelectric Point (pI)

23.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_zinc_N	PF00107	23 - 93	1.8e-10	Zinc-binding dehydrogenase
ADH_zinc_N_2	PF13602	53 - 183	6.7e-16	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13010
fragaria_vesca	FvH4_2g18240 FvH4_2g18280 FvH4_2g18310 FvH4_2g18320 FvH4_2g18330 FvH4_2g18340 FvH4_2g18350
malus_domestica	MD05G1166800.v1.1 MD05G1167200.v1.1 MD05G1167300.v1.1 MD05G1167400.v1.1 MD05G1167600.v1.1 MD05G1168000.v1.1 MD05G1168200.v1.1 MD05G1168400.v1.1 MD05G1168600.v1.1 MD05G1168700.v1.1 MD05G1168800.v1.1 MD10G1156900.v1.1 MD10G1157000.v1.1 MD10G1157100.v1.1 MD10G1157200.v1.1
prunus_persica	Prupe.8G195100_v2.0.a1 Prupe.8G195100_v2.0.a1 Prupe.8G195300_v2.0.a1 Prupe.8G195600_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G196000_v2.0.a1 Prupe.8G196000_v2.0.a1
pyrus_communis	pycom05g15560 pycom05g15600 pycom05g15610 pycom05g15620 pycom05g15630 pycom10g13550 pycom10g13570
rosa_chinensis	RchiOBHm_Chr6g0283611 RchiOBHm_Chr6g0283631 RchiOBHm_Chr6g0283641 RchiOBHm_Chr6g0283661 RchiOBHm_Chr6g0283681 RchiOBHm_Chr6g0283691 RchiOBHm_Chr6g0283701 RchiOBHm_Chr6g0283711 RchiOBHm_Chr6g0283721
rosa_laevigata	RLG00000012804 RLG00000012807 RLG00000012811
rosa_multiflora	Rmu_co8263921.1_g000001 Rmu_sc0001521.1_g000009 Rmu_sc0002906.1_g000002 Rmu_sc0002906.1_g000011 Rmu_sc0002906.1_g000013 Rmu_sc0005719.1_g000016 Rmu_sc0005719.1_g000022 Rmu_sc0029460.1_g000001
rosa_roxburghii	Rroxscaffold_7G00185240 Rroxscaffold_7G00185250 Rroxscaffold_7G00185270 Rroxscaffold_7G00185280 Rroxscaffold_7G00185290 Rroxscaffold_7G00185330 Rroxscaffold_7G00185350
rosa_rugosa	Rorug06G0156100 Rorug06G0156300 Rorug06G0156400 Rorug06G0156500 Rorug06G0156600 Rorug06G0156700 Rorug06G0156800 Rorug06G0156900 Rorug06G0157000
rosa_samantha	Rh6AG267900 Rh6AG268100 Rh6AG268200 Rh6AG268400 Rh6AG268600 Rh6AG268700 Rh6AG268900 Rh6AG269100 Rh6BG270700 Rh6BG270900 Rh6BG271000 Rh6BG271200 Rh6BG271400 Rh6BG271500 Rh6CG270200 Rh6CG270400 Rh6CG270500 Rh6CG270800 Rh6CG270900 Rh6CG271000 Rh6CG271100 Rh6CG271300 Rh6DG263900 Rh6DG264100 Rh6DG264200 Rh6DG264400 Rh6DG264600 Rh6DG264800 Rh6DG265200
rosa_wichuraiana	Rw6G023210 Rw6G023220 Rw6G023230 Rw6G023240 Rw6G023250 Rw6G023260 Rw6G023270 Rw6G023280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	53, 385
AclWI	GGATC	1 cut(s)	235
AcuI	CTGAAG	2 cut(s)	213, 516
AfiI	CCNNNNNNNGG	2 cut(s)	195, 196
AflII	CTTAAG	1 cut(s)	353
AflIII	ACRYGT	1 cut(s)	122
AgeI	ACCGGT	1 cut(s)	50
AgsI	TTSAA	1 cut(s)	143
AjnI	CCWGG	1 cut(s)	417
AluBI	AGCT	5 cut(s)	97, 156, 294, 333, 454
AluI	AGCT	5 cut(s)	97, 156, 294, 333, 454
Alw21I	GWGCWC	1 cut(s)	296
Alw26I	GTCTC	1 cut(s)	508
AlwI	GGATC	1 cut(s)	235
ApeKI	GCWGC	2 cut(s)	333, 525
AsiGI	ACCGGT	1 cut(s)	50
AsuHPI	GGTGA	3 cut(s)	355, 422, 451
BanI	GGYRCC	2 cut(s)	53, 385
BanII	GRGCYC	2 cut(s)	215, 296
BbsI	GAAGAC	1 cut(s)	383
Bbv12I	GWGCWC	1 cut(s)	296
BbvI	GCAGC	2 cut(s)	320, 512
BccI	CCATC	3 cut(s)	11, 223, 515
BciT130I	CCWGG	1 cut(s)	419
BclI	TGATCA	1 cut(s)	393
BcoDI	GTCTC	1 cut(s)	508
BfaI	CTAG	1 cut(s)	89
BfrI	CTTAAG	1 cut(s)	353
BisI	GCNGC	2 cut(s)	334, 526
BlsI	GCNGC	2 cut(s)	335, 527
Bme1390I	CCNGG	1 cut(s)	419
BmiI	GGNNCC	2 cut(s)	55, 387
BmrFI	CCNGG	1 cut(s)	419
BmrI	ACTGGG	1 cut(s)	543
BmsI	GCATC	1 cut(s)	490
BmuI	ACTGGG	1 cut(s)	543
BpiI	GAAGAC	1 cut(s)	383
Bpu10I	CCTNAGC	2 cut(s)	157, 329
BpuEI	CTTGAG	2 cut(s)	310, 440
BsaWI	WCCGGW	1 cut(s)	50
Bsc4I	CCNNNNNNNGG	2 cut(s)	195, 196
Bse118I	RCCGGY	1 cut(s)	50
Bse1I	ACTGG	2 cut(s)	387, 538
BseBI	CCWGG	1 cut(s)	419
BseLI	CCNNNNNNNGG	2 cut(s)	195, 196
BseMII	CTCAG	1 cut(s)	320
BseNI	ACTGG	2 cut(s)	387, 538
BseXI	GCAGC	2 cut(s)	320, 512
BshNI	GGYRCC	2 cut(s)	53, 385
BshTI	ACCGGT	1 cut(s)	50
BsiHKAI	GWGCWC	1 cut(s)	296
BsiSI	CCGG	1 cut(s)	51
BslI	CCNNNNNNNGG	2 cut(s)	195, 196
BsmAI	GTCTC	1 cut(s)	508
Bsp1286I	GDGCHC	2 cut(s)	215, 296
Bsp143I	GATC	4 cut(s)	130, 240, 393, 540
BspCNI	CTCAG	1 cut(s)	321
BspLI	GGNNCC	2 cut(s)	55, 387
BspPI	GGATC	1 cut(s)	235
BspT107I	GGYRCC	2 cut(s)	53, 385
BspTI	CTTAAG	1 cut(s)	353
BsrFI	RCCGGY	1 cut(s)	50
BsrI	ACTGG	2 cut(s)	387, 538
BssAI	RCCGGY	1 cut(s)	50
BssMI	GATC	4 cut(s)	130, 240, 393, 540
Bst2UI	CCWGG	1 cut(s)	419
Bst4CI	ACNGT	2 cut(s)	118, 463
BstAFI	CTTAAG	1 cut(s)	353
BstDEI	CTNAG	3 cut(s)	9, 157, 329
BstKTI	GATC	4 cut(s)	133, 243, 396, 543
BstMAI	GTCTC	1 cut(s)	508
BstMBI	GATC	4 cut(s)	130, 240, 393, 540
BstMWI	GCNNNNNNNGC	1 cut(s)	500
BstNI	CCWGG	1 cut(s)	419
BstNSI	RCATGY	1 cut(s)	126
BstSCI	CCNGG	1 cut(s)	417
BstV1I	GCAGC	2 cut(s)	320, 512
BstV2I	GAAGAC	1 cut(s)	383
BtsIMutI	CAGTG	3 cut(s)	114, 380, 468
Cfr10I	RCCGGY	1 cut(s)	50
CspAI	ACCGGT	1 cut(s)	50
CspCI	CAANNNNNGTGG	1 cut(s)	30
CviAII	CATG	2 cut(s)	110, 123
DdeI	CTNAG	3 cut(s)	9, 157, 329
DpnI	GATC	4 cut(s)	132, 242, 395, 542
DpnII	GATC	4 cut(s)	130, 240, 393, 540
Ecl136II	GAGCTC	1 cut(s)	294
Eco24I	GRGCYC	2 cut(s)	215, 296
Eco53kI	GAGCTC	1 cut(s)	294
Eco57I	CTGAAG	2 cut(s)	213, 516
EcoICRI	GAGCTC	1 cut(s)	294
EcoRII	CCWGG	1 cut(s)	417
EcoT38I	GRGCYC	2 cut(s)	215, 296
FaeI	CATG	2 cut(s)	113, 126
FaiI	YATR	8 cut(s)	41, 78, 111, 124, 231, 311, 398, 480
FalI	AAGNNNNNCTT	2 cut(s)	249, 281
FatI	CATG	2 cut(s)	109, 122
FbaI	TGATCA	1 cut(s)	393
Fnu4HI	GCNGC	2 cut(s)	334, 526
FriOI	GRGCYC	2 cut(s)	215, 296
Fsp4HI	GCNGC	2 cut(s)	334, 526
FspBI	CTAG	1 cut(s)	89
GluI	GCNGC	2 cut(s)	334, 526
HapII	CCGG	1 cut(s)	51
Hin1II	CATG	2 cut(s)	113, 126
HinfI	GANTC	1 cut(s)	470
HpaII	CCGG	1 cut(s)	51
HphI	GGTGA	3 cut(s)	355, 422, 451
Hpy188I	TCNGA	2 cut(s)	101, 225
Hpy188III	TCNNGA	5 cut(s)	151, 176, 208, 238, 457
Hpy99I	CGWCG	1 cut(s)	71
HpyAV	CCTTC	6 cut(s)	188, 298, 376, 400, 436, 440
HpyCH4III	ACNGT	2 cut(s)	118, 463
HpyCH4IV	ACGT	1 cut(s)	66
HpyCH4V	TGCA	2 cut(s)	80, 528
HpyF10VI	GCNNNNNNNGC	1 cut(s)	500
HpyF3I	CTNAG	3 cut(s)	9, 157, 329
HpySE526I	ACGT	1 cut(s)	66
Hsp92II	CATG	2 cut(s)	113, 126
Ksp22I	TGATCA	1 cut(s)	393
Kzo9I	GATC	4 cut(s)	130, 240, 393, 540
LmnI	GCTCC	1 cut(s)	550
LpnPI	CCDG	9 cut(s)	45, 64, 204, 204, 341, 368, 404, 431, 519
Lsp1109I	GCAGC	2 cut(s)	320, 512
LweI	GCATC	1 cut(s)	490
MaeI	CTAG	1 cut(s)	89
MaeII	ACGT	1 cut(s)	66
MaeIII	GTNAC	4 cut(s)	62, 112, 118, 134
MalI	GATC	4 cut(s)	132, 242, 395, 542
MboI	GATC	4 cut(s)	130, 240, 393, 540
MboII	GAAGA	5 cut(s)	46, 240, 388, 509, 550
MhlI	GDGCHC	2 cut(s)	215, 296
MluCI	AATT	1 cut(s)	261
MlyI	GAGTC	1 cut(s)	464
MmeI	TCCRAC	2 cut(s)	109, 203
MnlI	CCTC	2 cut(s)	67, 163
MseI	TTAA	3 cut(s)	354, 432, 485
MspCI	CTTAAG	1 cut(s)	353
MspI	CCGG	1 cut(s)	51
MspR9I	CCNGG	1 cut(s)	419
MvaI	CCWGG	1 cut(s)	419
MwoI	GCNNNNNNNGC	1 cut(s)	500
NdeII	GATC	4 cut(s)	130, 240, 393, 540
NlaIII	CATG	2 cut(s)	113, 126
NlaIV	GGNNCC	2 cut(s)	55, 387
NmuCI	GTSAC	2 cut(s)	112, 118
NspI	RCATGY	1 cut(s)	126
PciI	ACATGT	1 cut(s)	122
PinAI	ACCGGT	1 cut(s)	50
PkrI	GCNGC	2 cut(s)	335, 527
PleI	GAGTC	1 cut(s)	464
PpsI	GAGTC	1 cut(s)	464
PscI	ACATGT	1 cut(s)	122
Psp124BI	GAGCTC	1 cut(s)	296
Psp6I	CCWGG	1 cut(s)	417
PspGI	CCWGG	1 cut(s)	417
PspN4I	GGNNCC	2 cut(s)	55, 387
SacI	GAGCTC	1 cut(s)	296
SaqAI	TTAA	3 cut(s)	354, 432, 485
SatI	GCNGC	2 cut(s)	334, 526
Sau3AI	GATC	4 cut(s)	130, 240, 393, 540
SchI	GAGTC	1 cut(s)	464
ScrFI	CCNGG	1 cut(s)	419
SduI	GDGCHC	2 cut(s)	215, 296
SfaNI	GCATC	1 cut(s)	490
SmlI	CTYRAG	3 cut(s)	289, 353, 455
SmoI	CTYRAG	3 cut(s)	289, 353, 455
Sse9I	AATT	1 cut(s)	261
SspMI	CTAG	1 cut(s)	89
SstI	GAGCTC	1 cut(s)	296
StyD4I	CCNGG	1 cut(s)	417
TaaI	ACNGT	2 cut(s)	118, 463
TaiI	ACGT	1 cut(s)	69
TaqI	TCGA	2 cut(s)	254, 473
TaqII	GACCGA	1 cut(s)	59
TasI	AATT	1 cut(s)	261
Tru1I	TTAA	3 cut(s)	354, 432, 485
Tru9I	TTAA	3 cut(s)	354, 432, 485
TscAI	CASTG	3 cut(s)	121, 387, 468
TseFI	GTSAC	2 cut(s)	112, 118
TseI	GCWGC	2 cut(s)	333, 525
Tsp45I	GTSAC	2 cut(s)	112, 118
TspDTI	ATGAA	1 cut(s)	240
TspRI	CASTG	3 cut(s)	121, 387, 468
Vha464I	CTTAAG	1 cut(s)	353
XceI	RCATGY	1 cut(s)	126
XcmI	CCANNNNNNNNNTGG	1 cut(s)	379
XspI	CTAG	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.