Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0000313

Physical Location & Seq

Genomic Coordinates Forward (+)

22390597 .. 22391124

Gene Structure 528 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0156300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGAACGTTTCACTTTCAGGGTCCTCCTGCCTGTAGGAAGGTCTCTATATGTTGAGACAAGCAAGTTACGCAAACCTATTGTTATTCTTAGTGCAGGAAAAAAAACTGCTAATGAGGATAACTTGCTAGCTCTGGTACCTGTGGACACCGAGCATCAAGCAAAGAAGGATATGCCCTTCCCTTCCCCAAAAAAGCTACAATTCCTGATGTCTGATTTAATGGAAGGCAAGACAAGCCCTGTTGCTCCTTCCAAGAAGGTAAAAGTGCCCGAATTACCTACTAAGTTTAGTGCCAAATTTCTGGGATTAGTGGAGACACCAAGTGGTATGTTGGTGCCTGCTGAGGTAATGATGCCCAAACTGTTTAAGTCAACCTTCCTGGTGGAAAAAAGAAGAGAGGTCGGCCTTTTGGGATCCAAAAATAAAAATCCCTCTAAAGCAAAGAAAGTTCCTACTGAAGATATCCTGAGTGTTCTGTTTTCAGTTAAGCCTCCTAGCCCTAGCTTGAAGGGCAAGGAGAAGATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N_2

Protein Analysis

175

Amino Acids

19.37

Weight (kDa)

10.03

Isoelectric Point (pI)

55.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13010
fragaria_vesca	FvH4_2g18240 FvH4_2g18280 FvH4_2g18310 FvH4_2g18320 FvH4_2g18330 FvH4_2g18340 FvH4_2g18350
malus_domestica	MD05G1166800.v1.1 MD05G1167200.v1.1 MD05G1167300.v1.1 MD05G1167400.v1.1 MD05G1167600.v1.1 MD05G1168000.v1.1 MD05G1168200.v1.1 MD05G1168400.v1.1 MD05G1168600.v1.1 MD05G1168700.v1.1 MD05G1168800.v1.1 MD10G1156900.v1.1 MD10G1157000.v1.1 MD10G1157100.v1.1 MD10G1157200.v1.1
prunus_persica	Prupe.8G195100_v2.0.a1 Prupe.8G195100_v2.0.a1 Prupe.8G195300_v2.0.a1 Prupe.8G195600_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G196000_v2.0.a1 Prupe.8G196000_v2.0.a1
pyrus_communis	pycom05g15560 pycom05g15600 pycom05g15610 pycom05g15620 pycom05g15630 pycom10g13550 pycom10g13570
rosa_chinensis	RchiOBHm_Chr6g0283611 RchiOBHm_Chr6g0283631 RchiOBHm_Chr6g0283641 RchiOBHm_Chr6g0283661 RchiOBHm_Chr6g0283681 RchiOBHm_Chr6g0283691 RchiOBHm_Chr6g0283701 RchiOBHm_Chr6g0283711 RchiOBHm_Chr6g0283721
rosa_laevigata	RLG00000012804 RLG00000012807 RLG00000012811
rosa_multiflora	Rmu_co8263921.1_g000001 Rmu_sc0001521.1_g000009 Rmu_sc0002906.1_g000002 Rmu_sc0002906.1_g000011 Rmu_sc0002906.1_g000013 Rmu_sc0005719.1_g000016 Rmu_sc0005719.1_g000022 Rmu_sc0029460.1_g000001
rosa_roxburghii	Rroxscaffold_7G00185240 Rroxscaffold_7G00185250 Rroxscaffold_7G00185270 Rroxscaffold_7G00185280 Rroxscaffold_7G00185290 Rroxscaffold_7G00185330 Rroxscaffold_7G00185350
rosa_rugosa	Rorug06G0156100 Rorug06G0156300 Rorug06G0156400 Rorug06G0156500 Rorug06G0156600 Rorug06G0156700 Rorug06G0156800 Rorug06G0156900 Rorug06G0157000
rosa_samantha	Rh6AG267900 Rh6AG268100 Rh6AG268200 Rh6AG268400 Rh6AG268600 Rh6AG268700 Rh6AG268900 Rh6AG269100 Rh6BG270700 Rh6BG270900 Rh6BG271000 Rh6BG271200 Rh6BG271400 Rh6BG271500 Rh6CG270200 Rh6CG270400 Rh6CG270500 Rh6CG270800 Rh6CG270900 Rh6CG271000 Rh6CG271100 Rh6CG271300 Rh6DG263900 Rh6DG264100 Rh6DG264200 Rh6DG264400 Rh6DG264600 Rh6DG264800 Rh6DG265200
rosa_wichuraiana	Rw6G023210 Rw6G023220 Rw6G023230 Rw6G023240 Rw6G023250 Rw6G023260 Rw6G023270 Rw6G023280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	136
AccB1I	GGYRCC	2 cut(s)	136, 334
AclI	AACGTT	1 cut(s)	7
AclWI	GGATC	2 cut(s)	408, 421
AcsI	RAATTY	1 cut(s)	296
AcuI	CTGAAG	1 cut(s)	477
AdeI	CACNNNGTG	1 cut(s)	323
AfaI	GTAC	1 cut(s)	138
AgsI	TTSAA	1 cut(s)	508
AjnI	CCWGG	1 cut(s)	378
AluBI	AGCT	3 cut(s)	131, 196, 504
AluI	AGCT	3 cut(s)	131, 196, 504
Alw26I	GTCTC	3 cut(s)	48, 50, 308
AlwI	GGATC	2 cut(s)	408, 421
AoxI	GGCC	1 cut(s)	403
ApoI	RAATTY	1 cut(s)	296
Asp718I	GGTACC	1 cut(s)	136
AspS9I	GGNCC	1 cut(s)	22
AsuNHI	GCTAGC	1 cut(s)	127
AvaII	GGWCC	1 cut(s)	22
BaeGI	GKGCMC	1 cut(s)	270
BamHI	GGATCC	1 cut(s)	413
BanI	GGYRCC	2 cut(s)	136, 334
BbvCI	CCTCAGC	1 cut(s)	342
BciT130I	CCWGG	1 cut(s)	380
BcoDI	GTCTC	3 cut(s)	48, 50, 308
BfaI	CTAG	3 cut(s)	128, 495, 501
BfmI	CTRYAG	1 cut(s)	33
Bme1390I	CCNGG	1 cut(s)	380
Bme18I	GGWCC	1 cut(s)	22
BmgT120I	GGNCC	1 cut(s)	22
BmiI	GGNNCC	4 cut(s)	23, 138, 336, 415
BmrFI	CCNGG	1 cut(s)	380
BmsI	GCATC	2 cut(s)	163, 342
BmtI	GCTAGC	1 cut(s)	131
Bpu10I	CCTNAGC	1 cut(s)	342
BsaI	GGTCTC	1 cut(s)	48
BseBI	CCWGG	1 cut(s)	380
BseMII	CTCAG	2 cut(s)	333, 458
BseSI	GKGCMC	1 cut(s)	270
BsgI	GTGCAG	1 cut(s)	114
BshFI	GGCC	1 cut(s)	405
BshNI	GGYRCC	2 cut(s)	136, 334
BsmAI	GTCTC	3 cut(s)	48, 50, 308
BsnI	GGCC	1 cut(s)	405
Bso31I	GGTCTC	1 cut(s)	48
Bsp1286I	GDGCHC	1 cut(s)	270
Bsp143I	GATC	1 cut(s)	413
BspANI	GGCC	1 cut(s)	405
BspCNI	CTCAG	2 cut(s)	334, 459
BspLI	GGNNCC	4 cut(s)	23, 138, 336, 415
BspOI	GCTAGC	1 cut(s)	131
BspPI	GGATC	2 cut(s)	408, 421
BspT107I	GGYRCC	2 cut(s)	136, 334
BspTNI	GGTCTC	1 cut(s)	48
BssMI	GATC	1 cut(s)	413
Bst2UI	CCWGG	1 cut(s)	380
Bst4CI	ACNGT	1 cut(s)	363
Bst6I	CTCTTC	1 cut(s)	388
BstC8I	GCNNGC	2 cut(s)	129, 339
BstDEI	CTNAG	4 cut(s)	89, 282, 342, 467
BstKTI	GATC	1 cut(s)	416
BstMAI	GTCTC	3 cut(s)	48, 50, 308
BstMBI	GATC	1 cut(s)	413
BstMWI	GCNNNNNNNGC	3 cut(s)	69, 234, 510
BstNI	CCWGG	1 cut(s)	380
BstSCI	CCNGG	1 cut(s)	378
BstSFI	CTRYAG	1 cut(s)	33
BstSLI	GKGCMC	1 cut(s)	270
BstX2I	RGATCY	1 cut(s)	413
BstXI	CCANNNNNNTGG	1 cut(s)	301
BstYI	RGATCY	1 cut(s)	413
BsuRI	GGCC	1 cut(s)	405
Cac8I	GCNNGC	2 cut(s)	129, 339
Cfr13I	GGNCC	1 cut(s)	22
Csp6I	GTAC	1 cut(s)	137
CviJI	RGCY	7 cut(s)	131, 196, 237, 405, 490, 498, 504
CviKI_1	RGCY	7 cut(s)	131, 196, 237, 405, 490, 498, 504
CviQI	GTAC	1 cut(s)	137
DdeI	CTNAG	4 cut(s)	89, 282, 342, 467
DpnI	GATC	1 cut(s)	415
DpnII	GATC	1 cut(s)	413
DraIII	CACNNNGTG	1 cut(s)	323
Eam1104I	CTCTTC	1 cut(s)	388
EarI	CTCTTC	1 cut(s)	388
Eco31I	GGTCTC	1 cut(s)	48
Eco32I	GATATC	1 cut(s)	463
Eco47I	GGWCC	1 cut(s)	22
Eco57I	CTGAAG	1 cut(s)	477
EcoO109I	RGGNCCY	1 cut(s)	22
EcoRII	CCWGG	1 cut(s)	378
EcoRV	GATATC	1 cut(s)	463
FaiI	YATR	5 cut(s)	49, 51, 173, 329, 526
FalI	AAGNNNNNCTT	2 cut(s)	359, 391
FspBI	CTAG	3 cut(s)	128, 495, 501
HaeIII	GGCC	1 cut(s)	405
HincII	GTYRAC	1 cut(s)	372
HindII	GTYRAC	1 cut(s)	372
Hpy166II	GTNNAC	2 cut(s)	145, 372
Hpy188I	TCNGA	1 cut(s)	214
Hpy188III	TCNNGA	2 cut(s)	205, 466
Hpy8I	GTNNAC	2 cut(s)	145, 372
HpyAV	CCTTC	9 cut(s)	33, 160, 187, 192, 218, 250, 258, 385, 502
HpyCH4III	ACNGT	1 cut(s)	363
HpyCH4IV	ACGT	1 cut(s)	7
HpyCH4V	TGCA	1 cut(s)	95
HpyF10VI	GCNNNNNNNGC	3 cut(s)	69, 234, 510
HpyF3I	CTNAG	4 cut(s)	89, 282, 342, 467
HpySE526I	ACGT	1 cut(s)	7
KpnI	GGTACC	1 cut(s)	140
Kzo9I	GATC	1 cut(s)	413
LmnI	GCTCC	1 cut(s)	250
LweI	GCATC	2 cut(s)	163, 342
MaeI	CTAG	3 cut(s)	128, 495, 501
MaeII	ACGT	1 cut(s)	7
MaeIII	GTNAC	1 cut(s)	66
MalI	GATC	1 cut(s)	415
MboI	GATC	1 cut(s)	413
MboII	GAAGA	2 cut(s)	405, 470
MflI	RGATCY	1 cut(s)	413
MhlI	GDGCHC	1 cut(s)	270
MluCI	AATT	3 cut(s)	200, 272, 296
MnlI	CCTC	6 cut(s)	35, 109, 337, 391, 442, 501
MseI	TTAA	3 cut(s)	218, 366, 486
MspR9I	CCNGG	1 cut(s)	380
MvaI	CCWGG	1 cut(s)	380
MwoI	GCNNNNNNNGC	3 cut(s)	69, 234, 510
NdeII	GATC	1 cut(s)	413
NheI	GCTAGC	1 cut(s)	127
NlaIV	GGNNCC	4 cut(s)	23, 138, 336, 415
PpuMI	RGGWCCY	1 cut(s)	22
Psp1406I	AACGTT	1 cut(s)	7
Psp5II	RGGWCCY	1 cut(s)	22
Psp6I	CCWGG	1 cut(s)	378
PspGI	CCWGG	1 cut(s)	378
PspN4I	GGNNCC	4 cut(s)	23, 138, 336, 415
PspPI	GGNCC	1 cut(s)	22
PspPPI	RGGWCCY	1 cut(s)	22
PsuI	RGATCY	1 cut(s)	413
RsaI	GTAC	1 cut(s)	138
RsaNI	GTAC	1 cut(s)	137
SaqAI	TTAA	3 cut(s)	218, 366, 486
Sau3AI	GATC	1 cut(s)	413
Sau96I	GGNCC	1 cut(s)	22
ScrFI	CCNGG	1 cut(s)	380
SduI	GDGCHC	1 cut(s)	270
SfaNI	GCATC	2 cut(s)	163, 342
SfcI	CTRYAG	1 cut(s)	33
SinI	GGWCC	1 cut(s)	22
Sse9I	AATT	3 cut(s)	200, 272, 296
SspMI	CTAG	3 cut(s)	128, 495, 501
StyD4I	CCNGG	1 cut(s)	378
TaaI	ACNGT	1 cut(s)	363
TaiI	ACGT	1 cut(s)	10
TasI	AATT	3 cut(s)	200, 272, 296
Tru1I	TTAA	3 cut(s)	218, 366, 486
Tru9I	TTAA	3 cut(s)	218, 366, 486
VpaK11BI	GGWCC	1 cut(s)	22
XapI	RAATTY	1 cut(s)	296
XspI	CTAG	3 cut(s)	128, 495, 501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.