Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0000313

Physical Location & Seq

Genomic Coordinates Forward (+)

24569711 .. 24571385

Gene Structure 1675 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1157000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGTACTTGTTTTGCGAGGTTTTGGTGAAGCTCGAAGCAGCTAGTCTAAATCCAAGTGATTTCAAAATTCAGAAATGCCTTGCACGGCCGCTTTTTCCACGAAAACTGCCTCACACCCCTGGTAATGCCCTTTTGCCTGTGGACTATTTGGCATTTGCAGTAGTTGATGTGCTAACTTTGGATGGTTCATATGAGGGGACAGTTACCGATGTGGCCGGAGAGATTGTAGAAGTTGGACAAGACGTTCAAAAGTTCAAAGTAGCGGCTGAAGGTTCAGGCCTACCAATTGCTGGCCTCACAGCTCTCCAGGCTCTAACCGAAGCCGCAGGTATCAAGTTGGATGGAACTGGCCAGCATAAGAACATACTCATCACCGGTGCCTCTGGTGGAGTTGGTCTCTACGCAGTCCAGCTAGCAAAGCTAGGAAACACTCATGTAACAGCTACTTGTGGAACAAGAAACATTGAATTGGTTAAAAGCTTAGGGGCAGACGAGGTCCTTAACTACAACACACCTGATGGGGCAGCCCTAAAGAGCCCATCAGATCGAAAATATGATTTCGTAATCCACAGCGCATCGTCAGCGATTCCTTGGTCGATTTTCGAGCCAAATTTGAGCGAAAGAGGGCTGGTTATAGACCTAACTCCGGGTGCAAGTTCATTGTTCACTTTTGTTCTGAAGAAAATCACCTTCTCCAAGAAGAAGATGGTGCCGCTGATGATAAATGCAAAGGCTGAGAACCTGGATTGTCTTGTGAAGTTGGTGAAGGAAGGAAAGCTCAAGACGGTGATTGACTCGAAGCATCCTCTGAGCAAGGCTGAAGATGCTTGGGCTAAGAGACTCAATAGCAAATGCACAGGGAAGATCGTTGTGGAGCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N_2

Protein Analysis

294

Amino Acids

31.29

Weight (kDa)

8.46

Isoelectric Point (pI)

23.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_zinc_N	PF00107	130 - 194	3.3e-09	Zinc-binding dehydrogenase
ADH_zinc_N_2	PF13602	161 - 291	3.3e-15	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13010
fragaria_vesca	FvH4_2g18240 FvH4_2g18280 FvH4_2g18310 FvH4_2g18320 FvH4_2g18330 FvH4_2g18340 FvH4_2g18350
malus_domestica	MD05G1166800.v1.1 MD05G1167200.v1.1 MD05G1167300.v1.1 MD05G1167400.v1.1 MD05G1167600.v1.1 MD05G1168000.v1.1 MD05G1168200.v1.1 MD05G1168400.v1.1 MD05G1168600.v1.1 MD05G1168700.v1.1 MD05G1168800.v1.1 MD10G1156900.v1.1 MD10G1157000.v1.1 MD10G1157100.v1.1 MD10G1157200.v1.1
prunus_persica	Prupe.8G195100_v2.0.a1 Prupe.8G195100_v2.0.a1 Prupe.8G195300_v2.0.a1 Prupe.8G195600_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G196000_v2.0.a1 Prupe.8G196000_v2.0.a1
pyrus_communis	pycom05g15560 pycom05g15600 pycom05g15610 pycom05g15620 pycom05g15630 pycom10g13550 pycom10g13570
rosa_chinensis	RchiOBHm_Chr6g0283611 RchiOBHm_Chr6g0283631 RchiOBHm_Chr6g0283641 RchiOBHm_Chr6g0283661 RchiOBHm_Chr6g0283681 RchiOBHm_Chr6g0283691 RchiOBHm_Chr6g0283701 RchiOBHm_Chr6g0283711 RchiOBHm_Chr6g0283721
rosa_laevigata	RLG00000012804 RLG00000012807 RLG00000012811
rosa_multiflora	Rmu_co8263921.1_g000001 Rmu_sc0001521.1_g000009 Rmu_sc0002906.1_g000002 Rmu_sc0002906.1_g000011 Rmu_sc0002906.1_g000013 Rmu_sc0005719.1_g000016 Rmu_sc0005719.1_g000022 Rmu_sc0029460.1_g000001
rosa_roxburghii	Rroxscaffold_7G00185240 Rroxscaffold_7G00185250 Rroxscaffold_7G00185270 Rroxscaffold_7G00185280 Rroxscaffold_7G00185290 Rroxscaffold_7G00185330 Rroxscaffold_7G00185350
rosa_rugosa	Rorug06G0156100 Rorug06G0156300 Rorug06G0156400 Rorug06G0156500 Rorug06G0156600 Rorug06G0156700 Rorug06G0156800 Rorug06G0156900 Rorug06G0157000
rosa_samantha	Rh6AG267900 Rh6AG268100 Rh6AG268200 Rh6AG268400 Rh6AG268600 Rh6AG268700 Rh6AG268900 Rh6AG269100 Rh6BG270700 Rh6BG270900 Rh6BG271000 Rh6BG271200 Rh6BG271400 Rh6BG271500 Rh6CG270200 Rh6CG270400 Rh6CG270500 Rh6CG270800 Rh6CG270900 Rh6CG271000 Rh6CG271100 Rh6CG271300 Rh6DG263900 Rh6DG264100 Rh6DG264200 Rh6DG264400 Rh6DG264600 Rh6DG264800 Rh6DG265200
rosa_wichuraiana	Rw6G023210 Rw6G023220 Rw6G023230 Rw6G023240 Rw6G023250 Rw6G023260 Rw6G023270 Rw6G023280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	317
AccB1I	GGYRCC	2 cut(s)	377, 709
AccB7I	CCANNNNNTGG	1 cut(s)	290
AciI	CCGC	4 cut(s)	89, 263, 324, 713
AcoI	YGGCCR	3 cut(s)	86, 213, 349
AcsI	RAATTY	2 cut(s)	66, 610
AcuI	CTGAAG	3 cut(s)	288, 698, 840
AfaI	GTAC	1 cut(s)	5
AfiI	CCNNNNNNNGG	2 cut(s)	290, 646
AgeI	ACCGGT	1 cut(s)	374
AgsI	TTSAA	4 cut(s)	64, 248, 256, 467
AjnI	CCWGG	3 cut(s)	118, 306, 741
AloI	GAACNNNNNNTCC	2 cut(s)	228, 260
AluBI	AGCT	8 cut(s)	31, 41, 302, 412, 421, 443, 480, 778
AluI	AGCT	8 cut(s)	31, 41, 302, 412, 421, 443, 480, 778
Alw26I	GTCTC	2 cut(s)	401, 832
AoxI	GGCC	5 cut(s)	86, 213, 277, 292, 349
ApeKI	GCWGC	2 cut(s)	38, 524
ApoI	RAATTY	2 cut(s)	66, 610
AsiGI	ACCGGT	1 cut(s)	374
AspLEI	GCGC	1 cut(s)	575
AspS9I	GGNCC	1 cut(s)	496
AsuC2I	CCSGG	1 cut(s)	648
AsuHPI	GGTGA	5 cut(s)	37, 364, 679, 775, 799
AsuNHI	GCTAGC	1 cut(s)	412
AvaII	GGWCC	1 cut(s)	496
BalI	TGGCCA	1 cut(s)	351
BanI	GGYRCC	2 cut(s)	377, 709
BanII	GRGCYC	1 cut(s)	539
BbvI	GCAGC	2 cut(s)	50, 536
BccI	CCATC	5 cut(s)	176, 335, 512, 547, 700
BceAI	ACGGC	1 cut(s)	101
BciT130I	CCWGG	3 cut(s)	120, 308, 743
BcnI	CCSGG	1 cut(s)	648
BcoDI	GTCTC	2 cut(s)	401, 832
BfaI	CTAG	3 cut(s)	42, 413, 422
BfuAI	ACCTGC	1 cut(s)	317
BisI	GCNGC	6 cut(s)	39, 89, 264, 324, 525, 713
BlsI	GCNGC	6 cut(s)	40, 90, 265, 325, 526, 714
Bme1390I	CCNGG	4 cut(s)	120, 308, 648, 743
Bme18I	GGWCC	1 cut(s)	496
BmgT120I	GGNCC	1 cut(s)	496
BmiI	GGNNCC	3 cut(s)	379, 711, 876
BmrFI	CCNGG	4 cut(s)	120, 308, 648, 743
BmsI	GCATC	3 cut(s)	584, 811, 814
BmtI	GCTAGC	1 cut(s)	416
BplI	GAGNNNNNCTC	2 cut(s)	381, 413
BpmI	CTGGAG	1 cut(s)	290
Bpu10I	CCTNAGC	1 cut(s)	481
BpuEI	CTTGAG	1 cut(s)	764
BpuMI	CCSGG	1 cut(s)	648
BsaI	GGTCTC	1 cut(s)	401
BsaJI	CCNNGG	2 cut(s)	118, 590
BsaWI	WCCGGW	1 cut(s)	374
BsaXI	ACNNNNNCTCC	2 cut(s)	210, 240
Bsc4I	CCNNNNNNNGG	2 cut(s)	290, 646
Bse118I	RCCGGY	1 cut(s)	374
Bse1I	ACTGG	1 cut(s)	352
BseBI	CCWGG	3 cut(s)	120, 308, 743
BseDI	CCNNGG	2 cut(s)	118, 590
BseGI	GGATG	3 cut(s)	187, 346, 802
BseLI	CCNNNNNNNGG	2 cut(s)	290, 646
BseMII	CTCAG	2 cut(s)	726, 800
BseNI	ACTGG	1 cut(s)	352
BseX3I	CGGCCG	1 cut(s)	86
BseXI	GCAGC	2 cut(s)	50, 536
Bsh1285I	CGRYCG	1 cut(s)	89
BshFI	GGCC	5 cut(s)	88, 215, 279, 294, 351
BshNI	GGYRCC	2 cut(s)	377, 709
BshTI	ACCGGT	1 cut(s)	374
BsiEI	CGRYCG	1 cut(s)	89
BsiSI	CCGG	3 cut(s)	216, 375, 647
BslFI	GGGAC	1 cut(s)	211
BslI	CCNNNNNNNGG	2 cut(s)	290, 646
BsmAI	GTCTC	2 cut(s)	401, 832
BsmFI	GGGAC	1 cut(s)	211
BsnI	GGCC	5 cut(s)	88, 215, 279, 294, 351
Bso31I	GGTCTC	1 cut(s)	401
Bsp1286I	GDGCHC	1 cut(s)	539
Bsp143I	GATC	2 cut(s)	544, 864
BspACI	CCGC	4 cut(s)	89, 263, 324, 713
BspANI	GGCC	5 cut(s)	88, 215, 279, 294, 351
BspCNI	CTCAG	2 cut(s)	727, 801
BspLI	GGNNCC	3 cut(s)	379, 711, 876
BspMI	ACCTGC	1 cut(s)	317
BspOI	GCTAGC	1 cut(s)	416
BspT107I	GGYRCC	2 cut(s)	377, 709
BspTNI	GGTCTC	1 cut(s)	401
BsrFI	RCCGGY	1 cut(s)	374
BsrI	ACTGG	1 cut(s)	352
BssAI	RCCGGY	1 cut(s)	374
BssECI	CCNNGG	2 cut(s)	118, 590
BssMI	GATC	2 cut(s)	544, 864
BssT1I	CCWWGG	1 cut(s)	590
Bst2UI	CCWGG	3 cut(s)	120, 308, 743
Bst4CI	ACNGT	2 cut(s)	202, 787
BstC8I	GCNNGC	3 cut(s)	292, 353, 414
BstDEI	CTNAG	4 cut(s)	481, 735, 809, 834
BstF5I	GGATG	3 cut(s)	187, 346, 802
BstHHI	GCGC	1 cut(s)	575
BstKTI	GATC	2 cut(s)	547, 867
BstMAI	GTCTC	2 cut(s)	401, 832
BstMBI	GATC	2 cut(s)	544, 864
BstMCI	CGRYCG	1 cut(s)	89
BstMWI	GCNNNNNNNGC	4 cut(s)	308, 418, 581, 824
BstNI	CCWGG	3 cut(s)	120, 308, 743
BstSCI	CCNGG	4 cut(s)	118, 306, 646, 741
BstV1I	GCAGC	2 cut(s)	50, 536
BstZI	CGGCCG	1 cut(s)	86
BsuRI	GGCC	5 cut(s)	88, 215, 279, 294, 351
BtsCI	GGATG	3 cut(s)	187, 346, 802
BveI	ACCTGC	1 cut(s)	317
Cac8I	GCNNGC	3 cut(s)	292, 353, 414
CfoI	GCGC	1 cut(s)	575
Cfr10I	RCCGGY	1 cut(s)	374
Cfr13I	GGNCC	1 cut(s)	496
Csp6I	GTAC	1 cut(s)	4
CspAI	ACCGGT	1 cut(s)	374
CviAII	CATG	1 cut(s)	434
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	4 cut(s)	481, 735, 809, 834
DpnI	GATC	2 cut(s)	546, 866
DpnII	GATC	2 cut(s)	544, 864
EaeI	YGGCCR	3 cut(s)	86, 213, 349
EagI	CGGCCG	1 cut(s)	86
EclXI	CGGCCG	1 cut(s)	86
Eco130I	CCWWGG	1 cut(s)	590
Eco147I	AGGCCT	1 cut(s)	279
Eco24I	GRGCYC	1 cut(s)	539
Eco31I	GGTCTC	1 cut(s)	401
Eco47I	GGWCC	1 cut(s)	496
Eco52I	CGGCCG	1 cut(s)	86
Eco57I	CTGAAG	3 cut(s)	288, 698, 840
EcoO109I	RGGNCCY	1 cut(s)	496
EcoRII	CCWGG	3 cut(s)	118, 306, 741
EcoT14I	CCWWGG	1 cut(s)	590
EcoT38I	GRGCYC	1 cut(s)	539
ErhI	CCWWGG	1 cut(s)	590
FaeI	CATG	1 cut(s)	437
FaiI	YATR	7 cut(s)	190, 192, 357, 365, 435, 555, 635
FaqI	GGGAC	1 cut(s)	211
FatI	CATG	1 cut(s)	433
FauNDI	CATATG	1 cut(s)	190
Fnu4HI	GCNGC	6 cut(s)	39, 89, 264, 324, 525, 713
FokI	GGATG	3 cut(s)	194, 353, 789
FriOI	GRGCYC	1 cut(s)	539
Fsp4HI	GCNGC	6 cut(s)	39, 89, 264, 324, 525, 713
FspBI	CTAG	3 cut(s)	42, 413, 422
GlaI	GCGC	1 cut(s)	574
GluI	GCNGC	6 cut(s)	39, 89, 264, 324, 525, 713
GsuI	CTGGAG	1 cut(s)	290
HaeIII	GGCC	5 cut(s)	88, 215, 279, 294, 351
HapII	CCGG	3 cut(s)	216, 375, 647
HhaI	GCGC	1 cut(s)	575
Hin1II	CATG	1 cut(s)	437
Hin6I	GCGC	1 cut(s)	573
HinP1I	GCGC	1 cut(s)	573
HindIII	AAGCTT	1 cut(s)	478
HinfI	GANTC	3 cut(s)	586, 794, 840
HpaII	CCGG	3 cut(s)	216, 375, 647
HphI	GGTGA	5 cut(s)	37, 364, 679, 775, 799
Hpy166II	GTNNAC	2 cut(s)	142, 666
Hpy188I	TCNGA	4 cut(s)	72, 544, 678, 810
Hpy188III	TCNNGA	1 cut(s)	781
Hpy8I	GTNNAC	2 cut(s)	142, 666
HpyAV	CCTTC	4 cut(s)	263, 700, 760, 764
HpyCH4III	ACNGT	2 cut(s)	202, 787
HpyCH4IV	ACGT	1 cut(s)	243
HpyCH4V	TGCA	5 cut(s)	83, 158, 653, 728, 855
HpyF10VI	GCNNNNNNNGC	4 cut(s)	308, 418, 581, 824
HpyF3I	CTNAG	4 cut(s)	481, 735, 809, 834
HpySE526I	ACGT	1 cut(s)	243
Hsp92II	CATG	1 cut(s)	437
HspAI	GCGC	1 cut(s)	573
Kzo9I	GATC	2 cut(s)	544, 864
LmnI	GCTCC	1 cut(s)	874
Lsp1109I	GCAGC	2 cut(s)	50, 536
LweI	GCATC	3 cut(s)	584, 811, 814
MaeI	CTAG	3 cut(s)	42, 413, 422
MaeII	ACGT	1 cut(s)	243
MaeIII	GTNAC	2 cut(s)	202, 436
MalI	GATC	2 cut(s)	546, 866
MboI	GATC	2 cut(s)	544, 864
MboII	GAAGA	5 cut(s)	691, 712, 715, 833, 874
MfeI	CAATTG	1 cut(s)	285
MhlI	GDGCHC	1 cut(s)	539
MlsI	TGGCCA	1 cut(s)	351
MluCI	AATT	4 cut(s)	66, 285, 467, 610
MluNI	TGGCCA	1 cut(s)	351
MlyI	GAGTC	2 cut(s)	788, 834
MmeI	TCCRAC	2 cut(s)	214, 318
MnlI	CCTC	8 cut(s)	10, 120, 187, 305, 391, 487, 617, 816
Mox20I	TGGCCA	1 cut(s)	351
MscI	TGGCCA	1 cut(s)	351
MseI	TTAA	3 cut(s)	474, 501, 880
Msp20I	TGGCCA	1 cut(s)	351
MspA1I	CMGCKG	1 cut(s)	715
MspI	CCGG	3 cut(s)	216, 375, 647
MspR9I	CCNGG	4 cut(s)	120, 308, 648, 743
MunI	CAATTG	1 cut(s)	285
MvaI	CCWGG	3 cut(s)	120, 308, 743
MwoI	GCNNNNNNNGC	4 cut(s)	308, 418, 581, 824
NciI	CCSGG	1 cut(s)	648
NdeI	CATATG	1 cut(s)	190
NdeII	GATC	2 cut(s)	544, 864
NheI	GCTAGC	1 cut(s)	412
NlaIII	CATG	1 cut(s)	437
NlaIV	GGNNCC	3 cut(s)	379, 711, 876
PceI	AGGCCT	1 cut(s)	279
PfeI	GAWTC	1 cut(s)	586
PflFI	GACNNNGTC	1 cut(s)	494
PflMI	CCANNNNNTGG	1 cut(s)	290
PinAI	ACCGGT	1 cut(s)	374
PkrI	GCNGC	6 cut(s)	40, 90, 265, 325, 526, 714
PleI	GAGTC	2 cut(s)	788, 834
PpsI	GAGTC	2 cut(s)	788, 834
PpuMI	RGGWCCY	1 cut(s)	496
Psp5II	RGGWCCY	1 cut(s)	496
Psp6I	CCWGG	3 cut(s)	118, 306, 741
PspGI	CCWGG	3 cut(s)	118, 306, 741
PspN4I	GGNNCC	3 cut(s)	379, 711, 876
PspPI	GGNCC	1 cut(s)	496
PspPPI	RGGWCCY	1 cut(s)	496
PsyI	GACNNNGTC	1 cut(s)	494
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
SaqAI	TTAA	3 cut(s)	474, 501, 880
SatI	GCNGC	6 cut(s)	39, 89, 264, 324, 525, 713
Sau3AI	GATC	2 cut(s)	544, 864
Sau96I	GGNCC	1 cut(s)	496
SchI	GAGTC	2 cut(s)	788, 834
ScrFI	CCNGG	4 cut(s)	120, 308, 648, 743
SduI	GDGCHC	1 cut(s)	539
SfaNI	GCATC	3 cut(s)	584, 811, 814
SgrAI	CRCCGGYG	1 cut(s)	374
SinI	GGWCC	1 cut(s)	496
SmlI	CTYRAG	1 cut(s)	779
SmoI	CTYRAG	1 cut(s)	779
Sse9I	AATT	4 cut(s)	66, 285, 467, 610
SseBI	AGGCCT	1 cut(s)	279
SsiI	CCGC	4 cut(s)	89, 263, 324, 713
SspMI	CTAG	3 cut(s)	42, 413, 422
StuI	AGGCCT	1 cut(s)	279
StyD4I	CCNGG	4 cut(s)	118, 306, 646, 741
StyI	CCWWGG	1 cut(s)	590
TaaI	ACNGT	2 cut(s)	202, 787
TaiI	ACGT	1 cut(s)	246
TaqI	TCGA	5 cut(s)	33, 547, 596, 603, 797
TasI	AATT	4 cut(s)	66, 285, 467, 610
TatI	WGTACW	1 cut(s)	3
TauI	GCSGC	4 cut(s)	91, 266, 326, 715
TfiI	GAWTC	1 cut(s)	586
Tru1I	TTAA	3 cut(s)	474, 501, 880
Tru9I	TTAA	3 cut(s)	474, 501, 880
TseI	GCWGC	2 cut(s)	38, 524
TspDTI	ATGAA	2 cut(s)	177, 648
Tth111I	GACNNNGTC	1 cut(s)	494
Van91I	CCANNNNNTGG	1 cut(s)	290
VpaK11BI	GGWCC	1 cut(s)	496
XapI	RAATTY	2 cut(s)	66, 610
XcmI	CCANNNNNNNNNTGG	1 cut(s)	703
XspI	CTAG	3 cut(s)	42, 413, 422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.