Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0000313

Physical Location & Seq

Genomic Coordinates Forward (+)

24577598 .. 24579632

Gene Structure 2035 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1157100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGGCGGCGAAGCTTATGCATGCGGTTCAGTACGACAGCTATGGCGGAGAAGCAGCTGGTTTGAAGCATGTTGAGGTTCCGATTCCCGCCCCGAAGAAGAATGAGGTTTTGCTGAAATTGGAAGCAGTTAGTCTCAATCCAGTTGATTGGAAAATTCAGAAAGGCGAGCTGCGGCCTCTTTTCCCCAGAAAATTCCCTCAAATACCTGTAACTGATGTGGCCGGAGAGGTTGTAGAAGTTGGACAAGGTGCCAAAAAGTTCAAAGTCGGAGACAAAGTTGTTGTACTGCTCAGCCATTTCAGTGGAGGAGGACTGGCTGAGTTTGCTGTAACTAATGAGAGATTAATGGTTGCTAGGCCACCTGAAGTTTCAGCTGCCGAAGGCGCATGCTTACCTGTTGCTGGCCTCACGGCTCACCAAGCTCTCACCCAATGTGCAGGGATCAAGCTTGACGGAACAGGTCAAAATAAGAACATATTGATCACTGCTGCCTCTGGAGGCGTGGGACACTATGCAGTCCAACTAGCAAAGCTCGGAAATACTCACGTTACAGCCACATGTGGAGCGCGTAACATCGAATTGGTCAAGAGCTTAGGGGCAGATGAGGTTCTTGACTACAAGACCGAGGATGGGGCAGCTCTAAAGAGCCCGTCTGGACGAAAATATGATTTCGTAATCAATTGTGCAAAAGGCATTCCTTGGTCAACTTTTGAGCCTAGTTTGAGTGCAAAAGGGAAGGTTATAGACATTGCTCCGACTACGAGTTCTTTCGCTACTTTTGTCGTGAAGAAACTCACCTTCTCAAAGAAGCAGTTGGTGCCACTGCTCATGATTCCCAAGGGTGCGAACCTGGAGTTTCTTGTTAGCTTGGTGAAGGAAAAGAAGCTCAAGGCAGTGATCGACTCGACGCATTCTCTCAGCAAGGCTGAAGATGCTTGGATTAAGAGTATCGAGGGCCATGCTACAGGGAAGATCATTTTGGAGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N_2

Protein Analysis

330

Amino Acids

34.94

Weight (kDa)

9.14

Isoelectric Point (pI)

28.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	33 - 118	1.4e-15	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	167 - 272	3.9e-11	Zinc-binding dehydrogenase
ADH_zinc_N_2	PF13602	198 - 327	1.2e-20	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13010
fragaria_vesca	FvH4_2g18240 FvH4_2g18280 FvH4_2g18310 FvH4_2g18320 FvH4_2g18330 FvH4_2g18340 FvH4_2g18350
malus_domestica	MD05G1166800.v1.1 MD05G1167200.v1.1 MD05G1167300.v1.1 MD05G1167400.v1.1 MD05G1167600.v1.1 MD05G1168000.v1.1 MD05G1168200.v1.1 MD05G1168400.v1.1 MD05G1168600.v1.1 MD05G1168700.v1.1 MD05G1168800.v1.1 MD10G1156900.v1.1 MD10G1157000.v1.1 MD10G1157100.v1.1 MD10G1157200.v1.1
prunus_persica	Prupe.8G195100_v2.0.a1 Prupe.8G195100_v2.0.a1 Prupe.8G195300_v2.0.a1 Prupe.8G195600_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G196000_v2.0.a1 Prupe.8G196000_v2.0.a1
pyrus_communis	pycom05g15560 pycom05g15600 pycom05g15610 pycom05g15620 pycom05g15630 pycom10g13550 pycom10g13570
rosa_chinensis	RchiOBHm_Chr6g0283611 RchiOBHm_Chr6g0283631 RchiOBHm_Chr6g0283641 RchiOBHm_Chr6g0283661 RchiOBHm_Chr6g0283681 RchiOBHm_Chr6g0283691 RchiOBHm_Chr6g0283701 RchiOBHm_Chr6g0283711 RchiOBHm_Chr6g0283721
rosa_laevigata	RLG00000012804 RLG00000012807 RLG00000012811
rosa_multiflora	Rmu_co8263921.1_g000001 Rmu_sc0001521.1_g000009 Rmu_sc0002906.1_g000002 Rmu_sc0002906.1_g000011 Rmu_sc0002906.1_g000013 Rmu_sc0005719.1_g000016 Rmu_sc0005719.1_g000022 Rmu_sc0029460.1_g000001
rosa_roxburghii	Rroxscaffold_7G00185240 Rroxscaffold_7G00185250 Rroxscaffold_7G00185270 Rroxscaffold_7G00185280 Rroxscaffold_7G00185290 Rroxscaffold_7G00185330 Rroxscaffold_7G00185350
rosa_rugosa	Rorug06G0156100 Rorug06G0156300 Rorug06G0156400 Rorug06G0156500 Rorug06G0156600 Rorug06G0156700 Rorug06G0156800 Rorug06G0156900 Rorug06G0157000
rosa_samantha	Rh6AG267900 Rh6AG268100 Rh6AG268200 Rh6AG268400 Rh6AG268600 Rh6AG268700 Rh6AG268900 Rh6AG269100 Rh6BG270700 Rh6BG270900 Rh6BG271000 Rh6BG271200 Rh6BG271400 Rh6BG271500 Rh6CG270200 Rh6CG270400 Rh6CG270500 Rh6CG270800 Rh6CG270900 Rh6CG271000 Rh6CG271100 Rh6CG271300 Rh6DG263900 Rh6DG264100 Rh6DG264200 Rh6DG264400 Rh6DG264600 Rh6DG264800 Rh6DG265200
rosa_wichuraiana	Rw6G023210 Rw6G023220 Rw6G023230 Rw6G023240 Rw6G023250 Rw6G023260 Rw6G023270 Rw6G023280

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	248, 817
AccII	CGCG	1 cut(s)	568
AciI	CCGC	5 cut(s)	5, 23, 45, 87, 172
AclWI	GGATC	1 cut(s)	449
AcoI	YGGCCR	1 cut(s)	219
AcsI	RAATTY	2 cut(s)	153, 191
AcuI	CTGAAG	2 cut(s)	384, 948
AfaI	GTAC	2 cut(s)	32, 285
AfiI	CCNNNNNNNGG	2 cut(s)	401, 630
AflIII	ACRYGT	1 cut(s)	557
AgsI	TTSAA	2 cut(s)	64, 262
AjnI	CCWGG	1 cut(s)	849
AjuI	GAANNNNNNNTTGG	1 cut(s)	962
Alw26I	GTCTC	2 cut(s)	137, 264
AlwI	GGATC	1 cut(s)	449
AoxI	GGCC	5 cut(s)	173, 219, 356, 403, 955
ApeKI	GCWGC	5 cut(s)	53, 169, 374, 488, 635
ApoI	RAATTY	2 cut(s)	153, 191
AseI	ATTAAT	1 cut(s)	344
AspLEI	GCGC	2 cut(s)	386, 568
AspS9I	GGNCC	1 cut(s)	955
AsuHPI	GGTGA	4 cut(s)	407, 418, 787, 883
BanI	GGYRCC	2 cut(s)	248, 817
BanII	GRGCYC	1 cut(s)	650
BbvI	GCAGC	5 cut(s)	65, 156, 361, 475, 647
BccI	CCATC	1 cut(s)	623
BceAI	ACGGC	1 cut(s)	426
BcgI	CGANNNNNNTGC	3 cut(s)	32, 941, 975
BciT130I	CCWGG	1 cut(s)	851
BclI	TGATCA	1 cut(s)	480
BcoDI	GTCTC	2 cut(s)	137, 264
BfaI	CTAG	3 cut(s)	354, 524, 717
BfmI	CTRYAG	1 cut(s)	963
BisI	GCNGC	7 cut(s)	6, 54, 170, 173, 375, 489, 636
BlpI	GCTNAGC	1 cut(s)	290
BlsI	GCNGC	7 cut(s)	7, 55, 171, 174, 376, 490, 637
Bme1390I	CCNGG	1 cut(s)	851
BmgT120I	GGNCC	1 cut(s)	955
BmiI	GGNNCC	3 cut(s)	78, 250, 819
BmrFI	CCNGG	1 cut(s)	851
BmsI	GCATC	1 cut(s)	922
BpmI	CTGGAG	2 cut(s)	516, 872
Bpu10I	CCTNAGC	1 cut(s)	592
Bpu1102I	GCTNAGC	1 cut(s)	290
BpuEI	CTTGAG	1 cut(s)	872
BsaJI	CCNNGG	3 cut(s)	624, 698, 837
BsaXI	ACNNNNNCTCC	4 cut(s)	216, 246, 261, 291
Bsc4I	CCNNNNNNNGG	2 cut(s)	401, 630
Bse1I	ACTGG	2 cut(s)	140, 318
Bse3DI	GCAATG	1 cut(s)	747
BseBI	CCWGG	1 cut(s)	851
BseDI	CCNNGG	3 cut(s)	624, 698, 837
BseGI	GGATG	1 cut(s)	634
BseLI	CCNNNNNNNGG	2 cut(s)	401, 630
BseMI	GCAATG	1 cut(s)	747
BseMII	CTCAG	3 cut(s)	304, 309, 931
BseNI	ACTGG	2 cut(s)	140, 318
BseRI	GAGGAG	1 cut(s)	321
BseXI	GCAGC	5 cut(s)	65, 156, 361, 475, 647
BsgI	GTGCAG	1 cut(s)	456
Bsh1236I	CGCG	1 cut(s)	568
BshFI	GGCC	5 cut(s)	175, 221, 358, 405, 957
BshNI	GGYRCC	2 cut(s)	248, 817
BsiSI	CCGG	1 cut(s)	222
BslFI	GGGAC	1 cut(s)	519
BslI	CCNNNNNNNGG	2 cut(s)	401, 630
BsmAI	GTCTC	2 cut(s)	137, 264
BsmFI	GGGAC	1 cut(s)	519
BsmI	GAATGC	2 cut(s)	693, 910
BsnI	GGCC	5 cut(s)	175, 221, 358, 405, 957
Bsp1286I	GDGCHC	1 cut(s)	650
Bsp143I	GATC	4 cut(s)	441, 480, 897, 972
Bsp1720I	GCTNAGC	1 cut(s)	290
BspACI	CCGC	5 cut(s)	5, 23, 45, 87, 172
BspANI	GGCC	5 cut(s)	175, 221, 358, 405, 957
BspCNI	CTCAG	3 cut(s)	303, 310, 930
BspFNI	CGCG	1 cut(s)	568
BspHI	TCATGA	1 cut(s)	828
BspLI	GGNNCC	3 cut(s)	78, 250, 819
BspPI	GGATC	1 cut(s)	449
BspT107I	GGYRCC	2 cut(s)	248, 817
BsrDI	GCAATG	1 cut(s)	747
BsrI	ACTGG	2 cut(s)	140, 318
BssECI	CCNNGG	3 cut(s)	624, 698, 837
BssMI	GATC	4 cut(s)	441, 480, 897, 972
BssT1I	CCWWGG	2 cut(s)	698, 837
Bst2UI	CCWGG	1 cut(s)	851
BstAPI	GCANNNNNTGC	1 cut(s)	817
BstC8I	GCNNGC	4 cut(s)	21, 167, 388, 403
BstDEI	CTNAG	4 cut(s)	290, 318, 592, 917
BstF5I	GGATG	1 cut(s)	634
BstFNI	CGCG	1 cut(s)	568
BstHHI	GCGC	2 cut(s)	386, 568
BstKTI	GATC	4 cut(s)	444, 483, 900, 975
BstMAI	GTCTC	2 cut(s)	137, 264
BstMBI	GATC	4 cut(s)	441, 480, 897, 972
BstMWI	GCNNNNNNNGC	5 cut(s)	323, 383, 419, 817, 932
BstNI	CCWGG	1 cut(s)	851
BstNSI	RCATGY	4 cut(s)	23, 71, 390, 561
BstSCI	CCNGG	1 cut(s)	849
BstSFI	CTRYAG	1 cut(s)	963
BstUI	CGCG	1 cut(s)	568
BstV1I	GCAGC	5 cut(s)	65, 156, 361, 475, 647
BstXI	CCANNNNNNTGG	2 cut(s)	147, 302
BsuRI	GGCC	5 cut(s)	175, 221, 358, 405, 957
BtsCI	GGATG	1 cut(s)	634
BtsI	GCAGTG	3 cut(s)	483, 821, 900
BtsIMutI	CAGTG	4 cut(s)	307, 483, 821, 900
Cac8I	GCNNGC	4 cut(s)	21, 167, 388, 403
CciI	TCATGA	1 cut(s)	828
CfoI	GCGC	2 cut(s)	386, 568
Cfr13I	GGNCC	1 cut(s)	955
CseI	GACGC	1 cut(s)	916
Csp6I	GTAC	2 cut(s)	31, 284
CviAII	CATG	6 cut(s)	20, 68, 387, 558, 829, 959
CviQI	GTAC	2 cut(s)	31, 284
DdeI	CTNAG	4 cut(s)	290, 318, 592, 917
DpnI	GATC	4 cut(s)	443, 482, 899, 974
DpnII	GATC	4 cut(s)	441, 480, 897, 972
EaeI	YGGCCR	1 cut(s)	219
EciI	GGCGGA	1 cut(s)	60
Eco130I	CCWWGG	2 cut(s)	698, 837
Eco24I	GRGCYC	1 cut(s)	650
Eco57I	CTGAAG	2 cut(s)	384, 948
EcoRII	CCWGG	1 cut(s)	849
EcoT14I	CCWWGG	2 cut(s)	698, 837
EcoT22I	ATGCAT	1 cut(s)	21
EcoT38I	GRGCYC	1 cut(s)	650
ErhI	CCWWGG	2 cut(s)	698, 837
FaeI	CATG	6 cut(s)	23, 71, 390, 561, 832, 962
FaqI	GGGAC	1 cut(s)	519
FatI	CATG	6 cut(s)	19, 67, 386, 557, 828, 958
FauI	CCCGC	1 cut(s)	94
FbaI	TGATCA	1 cut(s)	480
Fnu4HI	GCNGC	7 cut(s)	6, 54, 170, 173, 375, 489, 636
FokI	GGATG	1 cut(s)	641
FriOI	GRGCYC	1 cut(s)	650
Fsp4HI	GCNGC	7 cut(s)	6, 54, 170, 173, 375, 489, 636
FspBI	CTAG	3 cut(s)	354, 524, 717
GlaI	GCGC	2 cut(s)	385, 567
GluI	GCNGC	7 cut(s)	6, 54, 170, 173, 375, 489, 636
GsuI	CTGGAG	2 cut(s)	516, 872
HaeIII	GGCC	5 cut(s)	175, 221, 358, 405, 957
HapII	CCGG	1 cut(s)	222
HgaI	GACGC	1 cut(s)	916
HhaI	GCGC	2 cut(s)	386, 568
Hin1II	CATG	6 cut(s)	23, 71, 390, 561, 832, 962
Hin6I	GCGC	2 cut(s)	384, 566
HinP1I	GCGC	2 cut(s)	384, 566
HincII	GTYRAC	1 cut(s)	705
HindII	GTYRAC	1 cut(s)	705
HindIII	AAGCTT	2 cut(s)	11, 446
HinfI	GANTC	3 cut(s)	82, 832, 902
HpaII	CCGG	1 cut(s)	222
HphI	GGTGA	4 cut(s)	407, 418, 787, 883
Hpy166II	GTNNAC	1 cut(s)	705
Hpy188I	TCNGA	5 cut(s)	81, 159, 269, 536, 756
Hpy188III	TCNNGA	6 cut(s)	495, 586, 611, 654, 784, 829
Hpy8I	GTNNAC	1 cut(s)	705
Hpy99I	CGWCG	1 cut(s)	910
HpyAV	CCTTC	4 cut(s)	374, 730, 808, 868
HpyCH4IV	ACGT	1 cut(s)	546
HpyCH4V	TGCA	5 cut(s)	19, 437, 515, 686, 728
HpyF10VI	GCNNNNNNNGC	5 cut(s)	323, 383, 419, 817, 932
HpyF3I	CTNAG	4 cut(s)	290, 318, 592, 917
HpySE526I	ACGT	1 cut(s)	546
Hsp92II	CATG	6 cut(s)	23, 71, 390, 561, 832, 962
HspAI	GCGC	2 cut(s)	384, 566
Ksp22I	TGATCA	1 cut(s)	480
Kzo9I	GATC	4 cut(s)	441, 480, 897, 972
LmnI	GCTCC	3 cut(s)	563, 757, 982
Lsp1109I	GCAGC	5 cut(s)	65, 156, 361, 475, 647
LweI	GCATC	1 cut(s)	922
MaeI	CTAG	3 cut(s)	354, 524, 717
MaeII	ACGT	1 cut(s)	546
MaeIII	GTNAC	4 cut(s)	208, 328, 547, 569
MalI	GATC	4 cut(s)	443, 482, 899, 974
MboI	GATC	4 cut(s)	441, 480, 897, 972
MboII	GAAGA	5 cut(s)	106, 109, 799, 941, 982
MfeI	CAATTG	1 cut(s)	679
MhlI	GDGCHC	1 cut(s)	650
MluCI	AATT	5 cut(s)	116, 153, 191, 578, 679
MlyI	GAGTC	1 cut(s)	896
MmeI	TCCRAC	4 cut(s)	220, 247, 544, 779
Mph1103I	ATGCAT	1 cut(s)	21
MseI	TTAA	3 cut(s)	344, 942, 988
MslI	CAYNNNNRTG	1 cut(s)	300
MspA1I	CMGCKG	2 cut(s)	56, 374
MspI	CCGG	1 cut(s)	222
MspR9I	CCNGG	1 cut(s)	851
MunI	CAATTG	1 cut(s)	679
Mva1269I	GAATGC	2 cut(s)	693, 910
MvaI	CCWGG	1 cut(s)	851
MvnI	CGCG	1 cut(s)	568
MwoI	GCNNNNNNNGC	5 cut(s)	323, 383, 419, 817, 932
NdeII	GATC	4 cut(s)	441, 480, 897, 972
NlaIII	CATG	6 cut(s)	23, 71, 390, 561, 832, 962
NlaIV	GGNNCC	3 cut(s)	78, 250, 819
NsiI	ATGCAT	1 cut(s)	21
NspI	RCATGY	4 cut(s)	23, 71, 390, 561
PaeI	GCATGC	2 cut(s)	23, 390
PagI	TCATGA	1 cut(s)	828
PciI	ACATGT	1 cut(s)	557
PctI	GAATGC	2 cut(s)	693, 910
PfeI	GAWTC	2 cut(s)	82, 832
PkrI	GCNGC	7 cut(s)	7, 55, 171, 174, 376, 490, 637
PleI	GAGTC	1 cut(s)	896
PpsI	GAGTC	1 cut(s)	896
PscI	ACATGT	1 cut(s)	557
PshBI	ATTAAT	1 cut(s)	344
Psp6I	CCWGG	1 cut(s)	849
PspGI	CCWGG	1 cut(s)	849
PspN4I	GGNNCC	3 cut(s)	78, 250, 819
PspPI	GGNCC	1 cut(s)	955
PvuII	CAGCTG	2 cut(s)	56, 374
RsaI	GTAC	2 cut(s)	32, 285
RsaNI	GTAC	2 cut(s)	31, 284
RseI	CAYNNNNRTG	1 cut(s)	300
SaqAI	TTAA	3 cut(s)	344, 942, 988
SatI	GCNGC	7 cut(s)	6, 54, 170, 173, 375, 489, 636
Sau3AI	GATC	4 cut(s)	441, 480, 897, 972
Sau96I	GGNCC	1 cut(s)	955
SchI	GAGTC	1 cut(s)	896
ScrFI	CCNGG	1 cut(s)	851
SduI	GDGCHC	1 cut(s)	650
SfaNI	GCATC	1 cut(s)	922
SfcI	CTRYAG	1 cut(s)	963
SmiMI	CAYNNNNRTG	1 cut(s)	300
SmlI	CTYRAG	1 cut(s)	887
SmoI	CTYRAG	1 cut(s)	887
SphI	GCATGC	2 cut(s)	23, 390
Sse9I	AATT	5 cut(s)	116, 153, 191, 578, 679
SsiI	CCGC	5 cut(s)	5, 23, 45, 87, 172
SspMI	CTAG	3 cut(s)	354, 524, 717
StyD4I	CCNGG	1 cut(s)	849
StyI	CCWWGG	2 cut(s)	698, 837
TaiI	ACGT	1 cut(s)	549
TaqI	TCGA	4 cut(s)	576, 900, 905, 951
TaqII	GACCGA	1 cut(s)	638
TasI	AATT	5 cut(s)	116, 153, 191, 578, 679
TatI	WGTACW	1 cut(s)	283
TauI	GCSGC	2 cut(s)	8, 175
TfiI	GAWTC	2 cut(s)	82, 832
Tru1I	TTAA	3 cut(s)	344, 942, 988
Tru9I	TTAA	3 cut(s)	344, 942, 988
TscAI	CASTG	4 cut(s)	307, 490, 828, 900
TseI	GCWGC	5 cut(s)	53, 169, 374, 488, 635
TspGWI	ACGGA	1 cut(s)	468
TspRI	CASTG	4 cut(s)	307, 490, 828, 900
VspI	ATTAAT	1 cut(s)	344
XapI	RAATTY	2 cut(s)	153, 191
XceI	RCATGY	4 cut(s)	23, 71, 390, 561
XspI	CTAG	3 cut(s)	354, 524, 717
Zsp2I	ATGCAT	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.