Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0000313

Physical Location & Seq

Genomic Coordinates Forward (+)

18766588 .. 18769917

Gene Structure 3330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G195300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGGTGGCAAAGCTTATGCATGCGGTTCAGTACAAAAGCTATGGTGGAGGACCTTCTGGTTTAAAGCATGTTGAGATTCCAATCCCCTCTCTGAAGAAAGATGAAGTTTTGCTGAAAACAGAAGCAGCTAGTCTGAATCCAAGTGATTTTAAAATTCAGAAAGGCCTGGCACGCCCTTTTTTACCACGCAAATTGCCTCACACACCTGTTACTGATGTAGCCGGAGAGATAGTAGAGGTTGGACAAGGAGTCAAGAAGTTCAAAGTGGGAGACAAAGTTGTGGCATTACTGAGCTATGGTAATGGAGGTGGACTGGCTGAGTTTGCTGTAGCTAAAGAGAAACGAGTAGTTGCTAGGCCTCCCGAAGTTTCGGCAGCTGAAGGTGCAGGCTTACCTATGGCTGGTCTCACAGCTCACCAGGCTGTCACCAAGGATGCAAGGATCAAGCTTGATGGAACTGGCCAGCTGAAGAACATACTGATTACTGGTGCCGCCGGTGGTGTTGGTCTCTATGCAGTCCAACTAGCAAAGCTTGGAAACACTCATGTTACCGCCACCTGTGGAGCTCGGAACATTGAATTGGTGAAGAGCTTAGGGGCAGATGAGATTCTTGACTACAAAACACCTGAAGGGGCATCCCTGAAGAGCCCGTCAGGTCGAAAATATGATGTTGTGATCCACAGTGCATCATCAGCCATTCCTTGGTCAGTCTTCGAGGCAAATTTGAGTGCAAGAGGGAAGGTAATAGACCTTACTATTGGTGCAAGTAATCTGTTTACTTTTGTTCTGAAGAAAATCACTTTCTCCAAGAAGAAGCTGGTGCTACTGGCTATAAGTGCCAAGGCTGAGAACCTGGATTGTCTTGTTAAGTTGGCCAAGGAAGGAAAACTCAAGACAGTAATTGACTCAAACTACCCTCTGAGCAAGGCTGAAGATGCTTGGGCTAAAAGAATCAATACCCAATGCACTGGGAAGATCATTGTGGAGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N_2

Protein Analysis

331

Amino Acids

34.88

Weight (kDa)

9.6

Isoelectric Point (pI)

22.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13010
fragaria_vesca	FvH4_2g18240 FvH4_2g18280 FvH4_2g18310 FvH4_2g18320 FvH4_2g18330 FvH4_2g18340 FvH4_2g18350
malus_domestica	MD05G1166800.v1.1 MD05G1167200.v1.1 MD05G1167300.v1.1 MD05G1167400.v1.1 MD05G1167600.v1.1 MD05G1168000.v1.1 MD05G1168200.v1.1 MD05G1168400.v1.1 MD05G1168600.v1.1 MD05G1168700.v1.1 MD05G1168800.v1.1 MD10G1156900.v1.1 MD10G1157000.v1.1 MD10G1157100.v1.1 MD10G1157200.v1.1
prunus_persica	Prupe.8G195100_v2.0.a1 Prupe.8G195100_v2.0.a1 Prupe.8G195300_v2.0.a1 Prupe.8G195600_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G196000_v2.0.a1 Prupe.8G196000_v2.0.a1
pyrus_communis	pycom05g15560 pycom05g15600 pycom05g15610 pycom05g15620 pycom05g15630 pycom10g13550 pycom10g13570
rosa_chinensis	RchiOBHm_Chr6g0283611 RchiOBHm_Chr6g0283631 RchiOBHm_Chr6g0283641 RchiOBHm_Chr6g0283661 RchiOBHm_Chr6g0283681 RchiOBHm_Chr6g0283691 RchiOBHm_Chr6g0283701 RchiOBHm_Chr6g0283711 RchiOBHm_Chr6g0283721
rosa_laevigata	RLG00000012804 RLG00000012807 RLG00000012811
rosa_multiflora	Rmu_co8263921.1_g000001 Rmu_sc0001521.1_g000009 Rmu_sc0002906.1_g000002 Rmu_sc0002906.1_g000011 Rmu_sc0002906.1_g000013 Rmu_sc0005719.1_g000016 Rmu_sc0005719.1_g000022 Rmu_sc0029460.1_g000001
rosa_roxburghii	Rroxscaffold_7G00185240 Rroxscaffold_7G00185250 Rroxscaffold_7G00185270 Rroxscaffold_7G00185280 Rroxscaffold_7G00185290 Rroxscaffold_7G00185330 Rroxscaffold_7G00185350
rosa_rugosa	Rorug06G0156100 Rorug06G0156300 Rorug06G0156400 Rorug06G0156500 Rorug06G0156600 Rorug06G0156700 Rorug06G0156800 Rorug06G0156900 Rorug06G0157000
rosa_samantha	Rh6AG267900 Rh6AG268100 Rh6AG268200 Rh6AG268400 Rh6AG268600 Rh6AG268700 Rh6AG268900 Rh6AG269100 Rh6BG270700 Rh6BG270900 Rh6BG271000 Rh6BG271200 Rh6BG271400 Rh6BG271500 Rh6CG270200 Rh6CG270400 Rh6CG270500 Rh6CG270800 Rh6CG270900 Rh6CG271000 Rh6CG271100 Rh6CG271300 Rh6DG263900 Rh6DG264100 Rh6DG264200 Rh6DG264400 Rh6DG264600 Rh6DG264800 Rh6DG265200
rosa_wichuraiana	Rw6G023210 Rw6G023220 Rw6G023230 Rw6G023240 Rw6G023250 Rw6G023260 Rw6G023270 Rw6G023280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	488
AccB7I	CCANNNNNTGG	1 cut(s)	702
AciI	CCGC	3 cut(s)	23, 492, 552
AclWI	GGATC	2 cut(s)	449, 670
AcoI	YGGCCR	2 cut(s)	460, 873
AcsI	RAATTY	2 cut(s)	153, 721
AcuI	CTGAAG	7 cut(s)	113, 399, 488, 648, 662, 809, 951
AfaI	GTAC	1 cut(s)	32
AfiI	CCNNNNNNNGG	2 cut(s)	401, 702
AgsI	TTSAA	2 cut(s)	262, 578
AhdI	GACNNNNNGTC	1 cut(s)	248
AjnI	CCWGG	3 cut(s)	165, 417, 852
AjuI	GAANNNNNNNTTGG	2 cut(s)	563, 595
Alw21I	GWGCWC	1 cut(s)	568
Alw26I	GTCTC	3 cut(s)	264, 410, 512
AlwI	GGATC	2 cut(s)	449, 670
AoxI	GGCC	4 cut(s)	163, 356, 460, 873
ApeKI	GCWGC	2 cut(s)	125, 374
ApoI	RAATTY	2 cut(s)	153, 721
AspS9I	GGNCC	1 cut(s)	50
AsuHPI	GGTGA	3 cut(s)	407, 418, 595
AvaII	GGWCC	1 cut(s)	50
BalI	TGGCCA	2 cut(s)	462, 875
BanI	GGYRCC	1 cut(s)	488
BanII	GRGCYC	2 cut(s)	568, 650
BbsI	GAAGAC	1 cut(s)	703
Bbv12I	GWGCWC	1 cut(s)	568
BbvI	GCAGC	2 cut(s)	137, 386
BccI	CCATC	1 cut(s)	446
BciT130I	CCWGG	3 cut(s)	167, 419, 854
BcoDI	GTCTC	3 cut(s)	264, 410, 512
BfaI	CTAG	3 cut(s)	129, 354, 524
BfmI	CTRYAG	1 cut(s)	327
BisI	GCNGC	3 cut(s)	126, 375, 492
BlsI	GCNGC	3 cut(s)	127, 376, 493
Bme1390I	CCNGG	3 cut(s)	167, 419, 854
Bme18I	GGWCC	1 cut(s)	50
BmeRI	GACNNNNNGTC	1 cut(s)	248
BmgT120I	GGNCC	1 cut(s)	50
BmiI	GGNNCC	2 cut(s)	490, 987
BmrFI	CCNGG	3 cut(s)	167, 419, 854
BmrI	ACTGGG	1 cut(s)	978
BmsI	GCATC	4 cut(s)	424, 644, 695, 925
BmuI	ACTGGG	1 cut(s)	978
BpiI	GAAGAC	1 cut(s)	703
Bpu10I	CCTNAGC	1 cut(s)	592
BpuEI	CTTGAG	1 cut(s)	875
BsaBI	GATNNNNATC	1 cut(s)	80
BsaI	GGTCTC	2 cut(s)	410, 512
BsaJI	CCNNGG	4 cut(s)	429, 701, 840, 876
BsaXI	ACNNNNNCTCC	4 cut(s)	216, 246, 261, 291
Bsc4I	CCNNNNNNNGG	2 cut(s)	401, 702
Bse118I	RCCGGY	1 cut(s)	494
Bse1I	ACTGG	5 cut(s)	318, 463, 490, 831, 973
Bse8I	GATNNNNATC	1 cut(s)	80
BseBI	CCWGG	3 cut(s)	167, 419, 854
BseDI	CCNNGG	4 cut(s)	429, 701, 840, 876
BseGI	GGATG	2 cut(s)	439, 635
BseJI	GATNNNNATC	1 cut(s)	80
BseLI	CCNNNNNNNGG	2 cut(s)	401, 702
BseMII	CTCAG	4 cut(s)	281, 309, 837, 911
BseNI	ACTGG	5 cut(s)	318, 463, 490, 831, 973
BseXI	GCAGC	2 cut(s)	137, 386
BsgI	GTGCAG	1 cut(s)	405
BshFI	GGCC	4 cut(s)	165, 358, 462, 875
BshNI	GGYRCC	1 cut(s)	488
BsiHKAI	GWGCWC	1 cut(s)	568
BsiSI	CCGG	2 cut(s)	222, 495
BslI	CCNNNNNNNGG	2 cut(s)	401, 702
BsmAI	GTCTC	3 cut(s)	264, 410, 512
BsnI	GGCC	4 cut(s)	165, 358, 462, 875
Bso31I	GGTCTC	2 cut(s)	410, 512
Bsp1286I	GDGCHC	2 cut(s)	568, 650
Bsp143I	GATC	3 cut(s)	441, 675, 975
BspACI	CCGC	3 cut(s)	23, 492, 552
BspANI	GGCC	4 cut(s)	165, 358, 462, 875
BspCNI	CTCAG	4 cut(s)	282, 310, 838, 912
BspLI	GGNNCC	2 cut(s)	490, 987
BspPI	GGATC	2 cut(s)	449, 670
BspQI	GCTCTTC	2 cut(s)	581, 638
BspT107I	GGYRCC	1 cut(s)	488
BspTNI	GGTCTC	2 cut(s)	410, 512
BsrFI	RCCGGY	1 cut(s)	494
BsrI	ACTGG	5 cut(s)	318, 463, 490, 831, 973
BssAI	RCCGGY	1 cut(s)	494
BssECI	CCNNGG	4 cut(s)	429, 701, 840, 876
BssMI	GATC	3 cut(s)	441, 675, 975
BssT1I	CCWWGG	4 cut(s)	429, 701, 840, 876
Bst2UI	CCWGG	3 cut(s)	167, 419, 854
Bst4CI	ACNGT	2 cut(s)	683, 898
Bst6I	CTCTTC	2 cut(s)	581, 638
BstC8I	GCNNGC	4 cut(s)	21, 172, 388, 464
BstDEI	CTNAG	5 cut(s)	290, 318, 592, 846, 920
BstF5I	GGATG	2 cut(s)	439, 635
BstKTI	GATC	3 cut(s)	444, 678, 978
BstMAI	GTCTC	3 cut(s)	264, 410, 512
BstMBI	GATC	3 cut(s)	441, 675, 975
BstMWI	GCNNNNNNNGC	7 cut(s)	171, 323, 383, 419, 692, 836, 935
BstNI	CCWGG	3 cut(s)	167, 419, 854
BstNSI	RCATGY	2 cut(s)	23, 71
BstSCI	CCNGG	3 cut(s)	165, 417, 852
BstSFI	CTRYAG	1 cut(s)	327
BstV1I	GCAGC	2 cut(s)	137, 386
BstV2I	GAAGAC	1 cut(s)	703
BstXI	CCANNNNNNTGG	1 cut(s)	968
BsuRI	GGCC	4 cut(s)	165, 358, 462, 875
BtsCI	GGATG	2 cut(s)	439, 635
BtsIMutI	CAGTG	2 cut(s)	688, 966
Cac8I	GCNNGC	4 cut(s)	21, 172, 388, 464
Cfr10I	RCCGGY	1 cut(s)	494
Cfr13I	GGNCC	1 cut(s)	50
Csp6I	GTAC	1 cut(s)	31
CspCI	CAANNNNNGTGG	2 cut(s)	174, 209
CviAII	CATG	3 cut(s)	20, 68, 545
CviQI	GTAC	1 cut(s)	31
DdeI	CTNAG	5 cut(s)	290, 318, 592, 846, 920
DpnI	GATC	3 cut(s)	443, 677, 977
DpnII	GATC	3 cut(s)	441, 675, 975
DraI	TTTAAA	2 cut(s)	63, 151
DriI	GACNNNNNGTC	1 cut(s)	248
EaeI	YGGCCR	2 cut(s)	460, 873
Eam1104I	CTCTTC	2 cut(s)	581, 638
Eam1105I	GACNNNNNGTC	1 cut(s)	248
EarI	CTCTTC	2 cut(s)	581, 638
Ecl136II	GAGCTC	1 cut(s)	566
Eco130I	CCWWGG	4 cut(s)	429, 701, 840, 876
Eco147I	AGGCCT	2 cut(s)	165, 358
Eco24I	GRGCYC	2 cut(s)	568, 650
Eco31I	GGTCTC	2 cut(s)	410, 512
Eco47I	GGWCC	1 cut(s)	50
Eco53kI	GAGCTC	1 cut(s)	566
Eco57I	CTGAAG	7 cut(s)	113, 399, 488, 648, 662, 809, 951
EcoICRI	GAGCTC	1 cut(s)	566
EcoO109I	RGGNCCY	1 cut(s)	50
EcoRII	CCWGG	3 cut(s)	165, 417, 852
EcoT14I	CCWWGG	4 cut(s)	429, 701, 840, 876
EcoT22I	ATGCAT	1 cut(s)	21
EcoT38I	GRGCYC	2 cut(s)	568, 650
ErhI	CCWWGG	4 cut(s)	429, 701, 840, 876
FaeI	CATG	3 cut(s)	23, 71, 548
FatI	CATG	3 cut(s)	19, 67, 544
Fnu4HI	GCNGC	3 cut(s)	126, 375, 492
FokI	GGATG	2 cut(s)	446, 622
FriOI	GRGCYC	2 cut(s)	568, 650
Fsp4HI	GCNGC	3 cut(s)	126, 375, 492
FspBI	CTAG	3 cut(s)	129, 354, 524
GluI	GCNGC	3 cut(s)	126, 375, 492
HaeIII	GGCC	4 cut(s)	165, 358, 462, 875
HapII	CCGG	2 cut(s)	222, 495
Hin1II	CATG	3 cut(s)	23, 71, 548
HindIII	AAGCTT	3 cut(s)	11, 446, 530
HinfI	GANTC	6 cut(s)	76, 136, 249, 607, 905, 951
HpaII	CCGG	2 cut(s)	222, 495
HphI	GGTGA	3 cut(s)	407, 418, 595
Hpy166II	GTNNAC	2 cut(s)	311, 777
Hpy188I	TCNGA	6 cut(s)	93, 135, 159, 570, 789, 921
Hpy188III	TCNNGA	4 cut(s)	253, 362, 611, 892
Hpy8I	GTNNAC	2 cut(s)	311, 777
HpyAV	CCTTC	5 cut(s)	63, 374, 623, 733, 875
HpyCH4III	ACNGT	2 cut(s)	683, 898
HpyCH4V	TGCA	8 cut(s)	19, 386, 437, 515, 686, 731, 764, 966
HpyF10VI	GCNNNNNNNGC	7 cut(s)	171, 323, 383, 419, 692, 836, 935
HpyF3I	CTNAG	5 cut(s)	290, 318, 592, 846, 920
Hsp92II	CATG	3 cut(s)	23, 71, 548
Kzo9I	GATC	3 cut(s)	441, 675, 975
LguI	GCTCTTC	2 cut(s)	581, 638
LmnI	GCTCC	2 cut(s)	563, 985
Lsp1109I	GCAGC	2 cut(s)	137, 386
LweI	GCATC	4 cut(s)	424, 644, 695, 925
MaeI	CTAG	3 cut(s)	129, 354, 524
MaeIII	GTNAC	3 cut(s)	208, 424, 547
MalI	GATC	3 cut(s)	443, 677, 977
MboI	GATC	3 cut(s)	441, 675, 975
MboII	GAAGA	9 cut(s)	106, 481, 598, 655, 703, 802, 823, 944, 985
MhlI	GDGCHC	2 cut(s)	568, 650
MlsI	TGGCCA	2 cut(s)	462, 875
MluCI	AATT	5 cut(s)	153, 191, 578, 721, 900
MluNI	TGGCCA	2 cut(s)	462, 875
MlyI	GAGTC	2 cut(s)	258, 899
MmeI	TCCRAC	2 cut(s)	220, 544
MnlI	CCTC	9 cut(s)	41, 97, 207, 229, 299, 369, 709, 728, 927
Mox20I	TGGCCA	2 cut(s)	462, 875
Mph1103I	ATGCAT	1 cut(s)	21
MscI	TGGCCA	2 cut(s)	462, 875
MseI	TTAA	3 cut(s)	62, 150, 867
Msp20I	TGGCCA	2 cut(s)	462, 875
MspA1I	CMGCKG	2 cut(s)	377, 466
MspI	CCGG	2 cut(s)	222, 495
MspR9I	CCNGG	3 cut(s)	167, 419, 854
MvaI	CCWGG	3 cut(s)	167, 419, 854
MwoI	GCNNNNNNNGC	7 cut(s)	171, 323, 383, 419, 692, 836, 935
NdeII	GATC	3 cut(s)	441, 675, 975
NlaIII	CATG	3 cut(s)	23, 71, 548
NlaIV	GGNNCC	2 cut(s)	490, 987
NmuCI	GTSAC	1 cut(s)	424
NsiI	ATGCAT	1 cut(s)	21
NspI	RCATGY	2 cut(s)	23, 71
PaeI	GCATGC	1 cut(s)	23
PceI	AGGCCT	2 cut(s)	165, 358
PciSI	GCTCTTC	2 cut(s)	581, 638
PfeI	GAWTC	4 cut(s)	76, 136, 607, 951
PflMI	CCANNNNNTGG	1 cut(s)	702
PkrI	GCNGC	3 cut(s)	127, 376, 493
PleI	GAGTC	2 cut(s)	257, 899
PpsI	GAGTC	2 cut(s)	257, 899
PpuMI	RGGWCCY	1 cut(s)	50
Psp124BI	GAGCTC	1 cut(s)	568
Psp5II	RGGWCCY	1 cut(s)	50
Psp6I	CCWGG	3 cut(s)	165, 417, 852
PspGI	CCWGG	3 cut(s)	165, 417, 852
PspN4I	GGNNCC	2 cut(s)	490, 987
PspPI	GGNCC	1 cut(s)	50
PspPPI	RGGWCCY	1 cut(s)	50
PvuII	CAGCTG	2 cut(s)	377, 466
RsaI	GTAC	1 cut(s)	32
RsaNI	GTAC	1 cut(s)	31
SacI	GAGCTC	1 cut(s)	568
SapI	GCTCTTC	2 cut(s)	581, 638
SaqAI	TTAA	3 cut(s)	62, 150, 867
SatI	GCNGC	3 cut(s)	126, 375, 492
Sau3AI	GATC	3 cut(s)	441, 675, 975
Sau96I	GGNCC	1 cut(s)	50
SchI	GAGTC	2 cut(s)	258, 899
ScrFI	CCNGG	3 cut(s)	167, 419, 854
SduI	GDGCHC	2 cut(s)	568, 650
SfaNI	GCATC	4 cut(s)	424, 644, 695, 925
SfcI	CTRYAG	1 cut(s)	327
SgrAI	CRCCGGYG	1 cut(s)	494
SinI	GGWCC	1 cut(s)	50
SmlI	CTYRAG	1 cut(s)	890
SmoI	CTYRAG	1 cut(s)	890
SphI	GCATGC	1 cut(s)	23
Sse9I	AATT	5 cut(s)	153, 191, 578, 721, 900
SseBI	AGGCCT	2 cut(s)	165, 358
SsiI	CCGC	3 cut(s)	23, 492, 552
SspMI	CTAG	3 cut(s)	129, 354, 524
SstI	GAGCTC	1 cut(s)	568
StuI	AGGCCT	2 cut(s)	165, 358
StyD4I	CCNGG	3 cut(s)	165, 417, 852
StyI	CCWWGG	4 cut(s)	429, 701, 840, 876
TaaI	ACNGT	2 cut(s)	683, 898
TaqI	TCGA	2 cut(s)	658, 714
TasI	AATT	5 cut(s)	153, 191, 578, 721, 900
TatI	WGTACW	1 cut(s)	30
TauI	GCSGC	1 cut(s)	494
TfiI	GAWTC	4 cut(s)	76, 136, 607, 951
Tru1I	TTAA	3 cut(s)	62, 150, 867
Tru9I	TTAA	3 cut(s)	62, 150, 867
TscAI	CASTG	2 cut(s)	688, 973
TseFI	GTSAC	1 cut(s)	424
TseI	GCWGC	2 cut(s)	125, 374
Tsp45I	GTSAC	1 cut(s)	424
TspDTI	ATGAA	1 cut(s)	117
TspRI	CASTG	2 cut(s)	688, 973
Van91I	CCANNNNNTGG	1 cut(s)	702
VpaK11BI	GGWCC	1 cut(s)	50
XapI	RAATTY	2 cut(s)	153, 721
XceI	RCATGY	2 cut(s)	23, 71
XcmI	CCANNNNNNNNNTGG	1 cut(s)	814
XspI	CTAG	3 cut(s)	129, 354, 524
Zsp2I	ATGCAT	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.