Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0000313

Physical Location & Seq

Genomic Coordinates Forward (+)

48936945 .. 48937181

Gene Structure 237 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG270700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

ATGTCTTCCGACGTTTCAGCGGCAGAAGGTGCAGGTTTACCCATTGCCGCTCTCTCTGCTCACTGGGATCTCACCAAAGATGCAGAGATCAAGCTTGATGGGACAGGCGAGCAGAAGAACATACTCATTACCGGTGCCTCTGGTAATGTCGGTCTCTATGCAATCCAACTGGCAAAGCTCGGAAACGCTCATGTCAGTATGTCACCGCCACTTGTGGAGCTCGTAACATTGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N_2

Protein Analysis

78

Amino Acids

7.96

Weight (kDa)

4.73

Isoelectric Point (pI)

33.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13010
fragaria_vesca	FvH4_2g18240 FvH4_2g18280 FvH4_2g18310 FvH4_2g18320 FvH4_2g18330 FvH4_2g18340 FvH4_2g18350
malus_domestica	MD05G1166800.v1.1 MD05G1167200.v1.1 MD05G1167300.v1.1 MD05G1167400.v1.1 MD05G1167600.v1.1 MD05G1168000.v1.1 MD05G1168200.v1.1 MD05G1168400.v1.1 MD05G1168600.v1.1 MD05G1168700.v1.1 MD05G1168800.v1.1 MD10G1156900.v1.1 MD10G1157000.v1.1 MD10G1157100.v1.1 MD10G1157200.v1.1
prunus_persica	Prupe.8G195100_v2.0.a1 Prupe.8G195100_v2.0.a1 Prupe.8G195300_v2.0.a1 Prupe.8G195600_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195700_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195800_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G195900_v2.0.a1 Prupe.8G196000_v2.0.a1 Prupe.8G196000_v2.0.a1
pyrus_communis	pycom05g15560 pycom05g15600 pycom05g15610 pycom05g15620 pycom05g15630 pycom10g13550 pycom10g13570
rosa_chinensis	RchiOBHm_Chr6g0283611 RchiOBHm_Chr6g0283631 RchiOBHm_Chr6g0283641 RchiOBHm_Chr6g0283661 RchiOBHm_Chr6g0283681 RchiOBHm_Chr6g0283691 RchiOBHm_Chr6g0283701 RchiOBHm_Chr6g0283711 RchiOBHm_Chr6g0283721
rosa_laevigata	RLG00000012804 RLG00000012807 RLG00000012811
rosa_multiflora	Rmu_co8263921.1_g000001 Rmu_sc0001521.1_g000009 Rmu_sc0002906.1_g000002 Rmu_sc0002906.1_g000011 Rmu_sc0002906.1_g000013 Rmu_sc0005719.1_g000016 Rmu_sc0005719.1_g000022 Rmu_sc0029460.1_g000001
rosa_roxburghii	Rroxscaffold_7G00185240 Rroxscaffold_7G00185250 Rroxscaffold_7G00185270 Rroxscaffold_7G00185280 Rroxscaffold_7G00185290 Rroxscaffold_7G00185330 Rroxscaffold_7G00185350
rosa_rugosa	Rorug06G0156100 Rorug06G0156300 Rorug06G0156400 Rorug06G0156500 Rorug06G0156600 Rorug06G0156700 Rorug06G0156800 Rorug06G0156900 Rorug06G0157000
rosa_samantha	Rh6AG267900 Rh6AG268100 Rh6AG268200 Rh6AG268400 Rh6AG268600 Rh6AG268700 Rh6AG268900 Rh6AG269100 Rh6BG270700 Rh6BG270900 Rh6BG271000 Rh6BG271200 Rh6BG271400 Rh6BG271500 Rh6CG270200 Rh6CG270400 Rh6CG270500 Rh6CG270800 Rh6CG270900 Rh6CG271000 Rh6CG271100 Rh6CG271300 Rh6DG263900 Rh6DG264100 Rh6DG264200 Rh6DG264400 Rh6DG264600 Rh6DG264800 Rh6DG265200
rosa_wichuraiana	Rw6G023210 Rw6G023220 Rw6G023230 Rw6G023240 Rw6G023250 Rw6G023260 Rw6G023270 Rw6G023280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	23
AccB1I	GGYRCC	1 cut(s)	134
AccBSI	CCGCTC	1 cut(s)	50
AciI	CCGC	3 cut(s)	20, 48, 206
AclWI	GGATC	1 cut(s)	75
AgeI	ACCGGT	1 cut(s)	131
AgsI	TTSAA	1 cut(s)	232
AluBI	AGCT	3 cut(s)	94, 178, 220
AluI	AGCT	3 cut(s)	94, 178, 220
Alw21I	GWGCWC	1 cut(s)	222
Alw26I	GTCTC	1 cut(s)	158
AlwI	GGATC	1 cut(s)	75
AsiGI	ACCGGT	1 cut(s)	131
AsuHPI	GGTGA	2 cut(s)	64, 195
BanI	GGYRCC	1 cut(s)	134
BanII	GRGCYC	1 cut(s)	222
Bbv12I	GWGCWC	1 cut(s)	222
BccI	CCATC	1 cut(s)	92
BcoDI	GTCTC	1 cut(s)	158
BfaI	CTAG	1 cut(s)	235
BfuAI	ACCTGC	1 cut(s)	23
BisI	GCNGC	2 cut(s)	21, 48
BlsI	GCNGC	2 cut(s)	22, 49
BmiI	GGNNCC	1 cut(s)	136
BmrI	ACTGGG	1 cut(s)	73
BmsI	GCATC	1 cut(s)	70
BmuI	ACTGGG	1 cut(s)	73
BsaI	GGTCTC	1 cut(s)	158
BsaWI	WCCGGW	1 cut(s)	131
Bse118I	RCCGGY	1 cut(s)	131
Bse1I	ACTGG	2 cut(s)	68, 174
Bse3DI	GCAATG	1 cut(s)	42
BseMI	GCAATG	1 cut(s)	42
BseNI	ACTGG	2 cut(s)	68, 174
BsgI	GTGCAG	1 cut(s)	51
BshNI	GGYRCC	1 cut(s)	134
BshTI	ACCGGT	1 cut(s)	131
BsiHKAI	GWGCWC	1 cut(s)	222
BsiSI	CCGG	1 cut(s)	132
BslFI	GGGAC	1 cut(s)	115
BsmAI	GTCTC	1 cut(s)	158
BsmFI	GGGAC	1 cut(s)	115
Bso31I	GGTCTC	1 cut(s)	158
Bsp1286I	GDGCHC	1 cut(s)	222
Bsp143I	GATC	2 cut(s)	67, 87
BspACI	CCGC	3 cut(s)	20, 48, 206
BspLI	GGNNCC	1 cut(s)	136
BspMI	ACCTGC	1 cut(s)	23
BspPI	GGATC	1 cut(s)	75
BspT107I	GGYRCC	1 cut(s)	134
BspTNI	GGTCTC	1 cut(s)	158
BsrBI	CCGCTC	1 cut(s)	50
BsrDI	GCAATG	1 cut(s)	42
BsrFI	RCCGGY	1 cut(s)	131
BsrI	ACTGG	2 cut(s)	68, 174
BssAI	RCCGGY	1 cut(s)	131
BssMI	GATC	2 cut(s)	67, 87
BstAPI	GCANNNNNTGC	1 cut(s)	29
BstC8I	GCNNGC	1 cut(s)	110
BstKTI	GATC	2 cut(s)	70, 90
BstMAI	GTCTC	1 cut(s)	158
BstMBI	GATC	2 cut(s)	67, 87
BstMWI	GCNNNNNNNGC	2 cut(s)	29, 56
BstX2I	RGATCY	1 cut(s)	67
BstYI	RGATCY	1 cut(s)	67
BtsIMutI	CAGTG	1 cut(s)	61
BveI	ACCTGC	1 cut(s)	23
Cac8I	GCNNGC	1 cut(s)	110
Cfr10I	RCCGGY	1 cut(s)	131
CspAI	ACCGGT	1 cut(s)	131
CviAII	CATG	1 cut(s)	191
CviJI	RGCY	3 cut(s)	94, 178, 220
CviKI_1	RGCY	3 cut(s)	94, 178, 220
DpnI	GATC	2 cut(s)	69, 89
DpnII	GATC	2 cut(s)	67, 87
Ecl136II	GAGCTC	1 cut(s)	220
Eco24I	GRGCYC	1 cut(s)	222
Eco31I	GGTCTC	1 cut(s)	158
Eco53kI	GAGCTC	1 cut(s)	220
EcoICRI	GAGCTC	1 cut(s)	220
EcoT38I	GRGCYC	1 cut(s)	222
FaeI	CATG	1 cut(s)	194
FaiI	YATR	4 cut(s)	122, 159, 192, 200
FaqI	GGGAC	1 cut(s)	115
FatI	CATG	1 cut(s)	190
Fnu4HI	GCNGC	2 cut(s)	21, 48
FriOI	GRGCYC	1 cut(s)	222
Fsp4HI	GCNGC	2 cut(s)	21, 48
FspBI	CTAG	1 cut(s)	235
GluI	GCNGC	2 cut(s)	21, 48
HapII	CCGG	1 cut(s)	132
Hin1II	CATG	1 cut(s)	194
HindIII	AAGCTT	1 cut(s)	92
HpaII	CCGG	1 cut(s)	132
HphI	GGTGA	2 cut(s)	64, 195
Hpy166II	GTNNAC	1 cut(s)	38
Hpy188I	TCNGA	2 cut(s)	10, 182
Hpy8I	GTNNAC	1 cut(s)	38
Hpy99I	CGWCG	1 cut(s)	14
HpyAV	CCTTC	1 cut(s)	20
HpyCH4IV	ACGT	1 cut(s)	12
HpyCH4V	TGCA	3 cut(s)	32, 83, 161
HpyF10VI	GCNNNNNNNGC	2 cut(s)	29, 56
HpySE526I	ACGT	1 cut(s)	12
Hsp92II	CATG	1 cut(s)	194
Kzo9I	GATC	2 cut(s)	67, 87
LmnI	GCTCC	1 cut(s)	217
LpnPI	CCDG	6 cut(s)	18, 49, 90, 126, 145, 155
LweI	GCATC	1 cut(s)	70
MaeI	CTAG	1 cut(s)	235
MaeII	ACGT	1 cut(s)	12
MaeIII	GTNAC	2 cut(s)	201, 223
MalI	GATC	2 cut(s)	69, 89
MbiI	CCGCTC	1 cut(s)	50
MboI	GATC	2 cut(s)	67, 87
MboII	GAAGA	1 cut(s)	127
MflI	RGATCY	1 cut(s)	67
MhlI	GDGCHC	1 cut(s)	222
MmeI	TCCRAC	2 cut(s)	33, 190
MnlI	CCTC	1 cut(s)	148
MspA1I	CMGCKG	1 cut(s)	20
MspI	CCGG	1 cut(s)	132
MwoI	GCNNNNNNNGC	2 cut(s)	29, 56
NdeII	GATC	2 cut(s)	67, 87
NlaIII	CATG	1 cut(s)	194
NlaIV	GGNNCC	1 cut(s)	136
NmuCI	GTSAC	1 cut(s)	201
PinAI	ACCGGT	1 cut(s)	131
PkrI	GCNGC	2 cut(s)	22, 49
Psp124BI	GAGCTC	1 cut(s)	222
PspN4I	GGNNCC	1 cut(s)	136
PsuI	RGATCY	1 cut(s)	67
SacI	GAGCTC	1 cut(s)	222
SatI	GCNGC	2 cut(s)	21, 48
Sau3AI	GATC	2 cut(s)	67, 87
SduI	GDGCHC	1 cut(s)	222
SetI	ASST	6 cut(s)	15, 31, 37, 96, 180, 222
SfaNI	GCATC	1 cut(s)	70
SsiI	CCGC	3 cut(s)	20, 48, 206
SspMI	CTAG	1 cut(s)	235
SstI	GAGCTC	1 cut(s)	222
TaiI	ACGT	1 cut(s)	15
TaqII	GACCGA	1 cut(s)	140
TauI	GCSGC	2 cut(s)	23, 50
TscAI	CASTG	1 cut(s)	68
TseFI	GTSAC	1 cut(s)	201
Tsp45I	GTSAC	1 cut(s)	201
TspRI	CASTG	1 cut(s)	68
XspI	CTAG	1 cut(s)	235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.