FvH4_1g10790

GDSL esterase lipase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000448
Physical Location & Seq
Forward (+)
5893469 .. 5895535
2067 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g10790.t1

Sequence Viewer

Length: 1128 bp
ATGGCCAATAACAACGGGTGGATTTTTTTGTTTTCTGTTTGGCTCTTTGTGTACAATCTGGCCATGCTAGATTTCCATGCAACCTCTGCACAGGAAAATATTACTGTGCCTGCAATTTACATATTTGGAGATTCTACAGTAGATGTTGGAACCAATAGTTACTTGCCTAAATGTAAAGCCAGGGCAGATATGCCTCACAATGGGATTGATTATCCAGGCTCTAAAGCAACAGGAAGATTTAGCAACGGTCACAACGTCGCAGATTTCCTCGCACAGTTCCTGGGTTACAAGGAGAGCCCGCCACCTTTTCTCTCTCTTTTAAACAAGAAGAAGCAGATTCCTAAGAGGAGGATTCCAACAAAGGGAGTTAACTTTGCATCAGGTGGATCAGGACTTCTGGATGATACTGGTAAACTACTATGGGGAGATGTTGTTTCCTTTGGGAAACAAGTGCAGCAATTCCGAACTGTACGTAACAATATATCGGAATCATGGGGTGCTGGTGGATTGGCTAACATTTCAAAGTCCATATTCATTATCAGCGTCGGAAGCAACGACATGTTTGAATTGTTCGCTGCCAATAAGTATAACCTAACGAAGAAAACCGAAAAAGACTTCTTGAGCAGACTCATCTCCTCTTACGAAACTCATCTAAGGGACCTGTTCAAGCTCGGAGCAAGGAAGTTTGGGATCATCGGCGTCCCGGCGATTGGGTGCTGCCCCGTCCAGAGAAAACTCAGTGAAACAGGTGGGTGTTTGGAGGCCATGAATGCTTATTCTCACTTGTTCTTCACGTCACTCCAAGTCCTCTTGAAGGAGTTAAGCTCAGAATGCAAAGGGATGCTATACTCACTTGGAGATACTTATACAATGACCAACGTTATTATGGAGACACCTCTCCCATTGGGGTTGGTGGAGGTGGCAAAAGCTTGTTGTGGTAAAGGGAAGTTGAATGCAGAGTTACGATGTGAACAAGATTCAAATTTGTGTGAAAATCGCCATGGCTACTTGTTCTGGGATCAATACCATTCATCACAGGCTGCGTCTGGAATGTTAGCCATGTATCTGTTTGGTGGTGCTCCATTTATGGTGTCACCCATGAGTTTCAGTCAATTGGCCGTTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

376

Amino Acids

41.25

Weight (kDa)

8.73

Isoelectric Point (pI)

36.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 39 - 355 5.6e-28 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000448)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10790 FvH4_1g10790 FvH4_1g10790 FvH4_1g10791 FvH4_1g10800 FvH4_2g15970 FvH4_2g15980 FvH4_2g15990
malus_domestica MD02G1121900.v1.1 MD05G1128700.v1.1 MD10G1131900.v1.1 MD15G1235500.v1.1 MD15G1235600.v1.1
prunus_persica Prupe.7G177500_v2.0.a1 Prupe.7G177600_v2.0.a1 Prupe.8G172800_v2.0.a1
pyrus_communis pycom05g12460 pycom05g12470 pycom10g11300
rosa_chinensis RchiOBHm_Chr2g0097971 RchiOBHm_Chr2g0098021 RchiOBHm_Chr2g0098061 RchiOBHm_Chr6g0257301 RchiOBHm_Chr6g0279511 RchiOBHm_Chr6g0279521
rosa_laevigata RLG00000013139 RLG00000013140 RLG00000013141 RLG00000016747 RLG00000016749 RLG00000016750 RLG00000016751 RLG00000016752
rosa_multiflora Rmu_sc0002648.1_g000005 Rmu_sc0002648.1_g000006 Rmu_sc0004649.1_g000019 Rmu_sc0004649.1_g000021 Rmu_sc0009572.1_g000002 Rmu_sc0013919.1_g000008 Rmu_sc0013919.1_g000009
rosa_roxburghii Rroxscaffold_2G00144370 Rroxscaffold_2G00144380 Rroxscaffold_2G00144390 Rroxscaffold_2G00144410 Rroxscaffold_4G00294600 Rroxscaffold_7G00188840 Rroxscaffold_7G00188850 Rroxscaffold_7G00188860
rosa_rugosa Rorug02G0069400 Rorug02G0069600 Rorug02G0069700 Rorug02G0069800 Rorug06G0098000.1 Rorug06G0125000 Rorug06G0125100 Rorug06G0125200
rosa_samantha Rh2AG116400 Rh2AG116800 Rh2AG116900 Rh2AG117000 Rh2BG119300 Rh2BG119500 Rh2BG119600 Rh2BG119700 Rh2BG119800 Rh2CG120900 Rh2CG121000 Rh2CG121200 Rh2CG121300 Rh2CG121400 Rh2CG121500 Rh2DG120600 Rh2DG121100 Rh2DG121200 Rh2DG121500 Rh6AG091200 Rh6AG234100 Rh6BG238400 Rh6BG238500 Rh6BG238600 Rh6CG078800 Rh6CG240400 Rh6CG240500 Rh6CG240600 Rh6DG074600 Rh6DG232000 Rh6DG232100
rosa_wichuraiana Rw2G009120 Rw2G009130 Rw2G009140 Rw6G020420 Rw6G020430 Rw6G020440

Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 299
AclI AACGTT 1 cut(s) 879
AclWI GGATC 3 cut(s) 394, 698, 1026
AcoI YGGCCR 3 cut(s) 3, 60, 1116
AcsI RAATTY 1 cut(s) 982
AcyI GRCGYC 1 cut(s) 699
AfaI GTAC 2 cut(s) 53, 471
AfiI CCNNNNNNNGG 4 cut(s) 200, 362, 710, 814
AflIII ACRYGT 1 cut(s) 558
AgsI TTSAA 6 cut(s) 522, 566, 667, 814, 952, 981
AjiI CACGTC 1 cut(s) 795
AjnI CCWGG 3 cut(s) 179, 214, 279
AluBI AGCT 3 cut(s) 670, 825, 929
AluI AGCT 3 cut(s) 670, 825, 929
Alw21I GWGCWC 1 cut(s) 1081
Alw26I GTCTC 1 cut(s) 884
AlwI GGATC 3 cut(s) 394, 698, 1026
AlwNI CAGNNNCTG 1 cut(s) 280
AoxI GGCC 4 cut(s) 3, 60, 762, 1116
ApeKI GCWGC 4 cut(s) 454, 575, 717, 1040
ApoI RAATTY 1 cut(s) 982
AspS9I GGNCC 1 cut(s) 658
AsuC2I CCSGG 1 cut(s) 704
AsuHPI GGTGA 1 cut(s) 1086
AvaII GGWCC 1 cut(s) 658
BalI TGGCCA 2 cut(s) 5, 62
BanII GRGCYC 1 cut(s) 299
Bbv12I GWGCWC 1 cut(s) 1081
BbvI GCAGC 4 cut(s) 466, 562, 704, 1027
BceAI ACGGC 1 cut(s) 1103
BciT130I CCWGG 3 cut(s) 181, 216, 281
BcnI CCSGG 1 cut(s) 704
BcoDI GTCTC 1 cut(s) 884
BfaI CTAG 1 cut(s) 68
BfmI CTRYAG 1 cut(s) 135
BisI GCNGC 4 cut(s) 455, 576, 718, 1041
BlsI GCNGC 4 cut(s) 456, 577, 719, 1042
Bme1390I CCNGG 4 cut(s) 181, 216, 281, 704
Bme18I GGWCC 1 cut(s) 658
BmgBI CACGTC 1 cut(s) 795
BmgT120I GGNCC 1 cut(s) 658
BmiI GGNNCC 2 cut(s) 151, 659
BmrFI CCNGG 4 cut(s) 181, 216, 281, 704
BmsI GCATC 2 cut(s) 386, 831
BplI GAGNNNNNCTC 2 cut(s) 809, 841
BpuEI CTTGAG 1 cut(s) 640
BpuMI CCSGG 1 cut(s) 704
BsaAI YACGTR 1 cut(s) 473
BsaHI GRCGYC 1 cut(s) 699
BsaJI CCNNGG 3 cut(s) 180, 280, 1000
BsaXI ACNNNNNCTCC 2 cut(s) 417, 447
Bsc4I CCNNNNNNNGG 4 cut(s) 200, 362, 710, 814
Bse1I ACTGG 1 cut(s) 412
BseBI CCWGG 3 cut(s) 181, 216, 281
BseDI CCNNGG 3 cut(s) 180, 280, 1000
BseGI GGATG 2 cut(s) 406, 846
BseLI CCNNNNNNNGG 4 cut(s) 200, 362, 710, 814
BseMII CTCAG 2 cut(s) 751, 840
BseNI ACTGG 1 cut(s) 412
BseRI GAGGAG 2 cut(s) 361, 625
BseXI GCAGC 4 cut(s) 466, 562, 704, 1027
BsgI GTGCAG 2 cut(s) 72, 473
BshFI GGCC 4 cut(s) 5, 62, 764, 1118
BsiHKAI GWGCWC 1 cut(s) 1081
BsiSI CCGG 1 cut(s) 704
BslFI GGGAC 2 cut(s) 671, 686
BslI CCNNNNNNNGG 4 cut(s) 200, 362, 710, 814
BsmAI GTCTC 1 cut(s) 884
BsmFI GGGAC 2 cut(s) 671, 686
BsmI GAATGC 3 cut(s) 775, 836, 958
BsnI GGCC 4 cut(s) 5, 62, 764, 1118
Bsp1286I GDGCHC 2 cut(s) 299, 1081
Bsp1407I TGTACA 1 cut(s) 51
Bsp143I GATC 3 cut(s) 386, 690, 1018
Bsp19I CCATGG 1 cut(s) 1000
BspACI CCGC 1 cut(s) 299
BspANI GGCC 4 cut(s) 5, 62, 764, 1118
BspCNI CTCAG 2 cut(s) 750, 839
BspLI GGNNCC 2 cut(s) 151, 659
BspPI GGATC 3 cut(s) 394, 698, 1026
BsrGI TGTACA 1 cut(s) 51
BsrI ACTGG 1 cut(s) 412
BssECI CCNNGG 3 cut(s) 180, 280, 1000
BssMI GATC 3 cut(s) 386, 690, 1018
BssNI GRCGYC 1 cut(s) 699
BssT1I CCWWGG 1 cut(s) 1000
Bst2UI CCWGG 3 cut(s) 181, 216, 281
Bst4CI ACNGT 5 cut(s) 106, 139, 248, 276, 469
BstACI GRCGYC 1 cut(s) 699
BstAPI GCANNNNNTGC 1 cut(s) 86
BstAUI TGTACA 1 cut(s) 51
BstBAI YACGTR 1 cut(s) 473
BstC8I GCNNGC 2 cut(s) 111, 299
BstDEI CTNAG 4 cut(s) 342, 653, 737, 826
BstDSI CCRYGG 1 cut(s) 1000
BstENI CCTNNNNNAGG 1 cut(s) 812
BstF5I GGATG 2 cut(s) 406, 846
BstKTI GATC 3 cut(s) 389, 693, 1021
BstMAI GTCTC 1 cut(s) 884
BstMBI GATC 3 cut(s) 386, 690, 1018
BstMWI GCNNNNNNNGC 4 cut(s) 86, 549, 770, 831
BstNI CCWGG 3 cut(s) 181, 216, 281
BstNSI RCATGY 1 cut(s) 562
BstSCI CCNGG 4 cut(s) 179, 214, 279, 702
BstSFI CTRYAG 1 cut(s) 135
BstSNI TACGTA 1 cut(s) 473
BstV1I GCAGC 4 cut(s) 466, 562, 704, 1027
BsuRI GGCC 4 cut(s) 5, 62, 764, 1118
BtgI CCRYGG 1 cut(s) 1000
BtrI CACGTC 1 cut(s) 795
BtsCI GGATG 2 cut(s) 406, 846
BtsIMutI CAGTG 1 cut(s) 745
Cac8I GCNNGC 2 cut(s) 111, 299
CaiI CAGNNNCTG 1 cut(s) 280
Cfr13I GGNCC 1 cut(s) 658
CseI GACGC 3 cut(s) 532, 688, 1032
Csp6I GTAC 2 cut(s) 52, 470
CviAII CATG 8 cut(s) 64, 77, 492, 559, 766, 1001, 1060, 1099
CviQI GTAC 2 cut(s) 52, 470
DdeI CTNAG 4 cut(s) 342, 653, 737, 826
DpnI GATC 3 cut(s) 388, 692, 1020
DpnII GATC 3 cut(s) 386, 690, 1018
DraI TTTAAA 1 cut(s) 321
EaeI YGGCCR 3 cut(s) 3, 60, 1116
Eco105I TACGTA 1 cut(s) 473
Eco130I CCWWGG 1 cut(s) 1000
Eco24I GRGCYC 1 cut(s) 299
Eco47I GGWCC 1 cut(s) 658
EcoNI CCTNNNNNAGG 1 cut(s) 812
EcoO109I RGGNCCY 1 cut(s) 658
EcoRII CCWGG 3 cut(s) 179, 214, 279
EcoT14I CCWWGG 1 cut(s) 1000
EcoT38I GRGCYC 1 cut(s) 299
ErhI CCWWGG 1 cut(s) 1000
FaeI CATG 8 cut(s) 67, 80, 495, 562, 769, 1004, 1063, 1102
FaqI GGGAC 2 cut(s) 671, 686
FatI CATG 8 cut(s) 63, 76, 491, 558, 765, 1000, 1059, 1098
FauI CCCGC 1 cut(s) 306
Fnu4HI GCNGC 4 cut(s) 455, 576, 718, 1041
FokI GGATG 2 cut(s) 413, 853
FriOI GRGCYC 1 cut(s) 299
Fsp4HI GCNGC 4 cut(s) 455, 576, 718, 1041
FspBI CTAG 1 cut(s) 68
GluI GCNGC 4 cut(s) 455, 576, 718, 1041
HaeIII GGCC 4 cut(s) 5, 62, 764, 1118
HapII CCGG 1 cut(s) 704
HgaI GACGC 3 cut(s) 532, 688, 1032
Hin1I GRCGYC 1 cut(s) 699
Hin1II CATG 8 cut(s) 67, 80, 495, 562, 769, 1004, 1063, 1102
HincII GTYRAC 1 cut(s) 370
HindII GTYRAC 1 cut(s) 370
HindIII AAGCTT 1 cut(s) 927
HinfI GANTC 6 cut(s) 131, 337, 352, 488, 627, 977
HpaI GTTAAC 1 cut(s) 370
HpaII CCGG 1 cut(s) 704
HphI GGTGA 1 cut(s) 1086
Hpy166II GTNNAC 4 cut(s) 52, 370, 413, 971
Hpy188I TCNGA 5 cut(s) 464, 487, 548, 674, 829
Hpy188III TCNNGA 6 cut(s) 390, 398, 619, 727, 811, 1047
Hpy8I GTNNAC 4 cut(s) 52, 370, 413, 971
Hpy99I CGWCG 2 cut(s) 260, 548
HpyAV CCTTC 1 cut(s) 808
HpyCH4III ACNGT 5 cut(s) 106, 139, 248, 276, 469
HpyCH4IV ACGT 4 cut(s) 255, 472, 794, 879
HpyCH4V TGCA 8 cut(s) 80, 89, 113, 377, 454, 834, 956, 1124
HpyF10VI GCNNNNNNNGC 4 cut(s) 86, 549, 770, 831
HpyF3I CTNAG 4 cut(s) 342, 653, 737, 826
HpySE526I ACGT 4 cut(s) 255, 472, 794, 879
Hsp92I GRCGYC 1 cut(s) 699
Hsp92II CATG 8 cut(s) 67, 80, 495, 562, 769, 1004, 1063, 1102
KspAI GTTAAC 1 cut(s) 370
Kzo9I GATC 3 cut(s) 386, 690, 1018
LmnI GCTCC 2 cut(s) 674, 1084
Lsp1109I GCAGC 4 cut(s) 466, 562, 704, 1027
LweI GCATC 2 cut(s) 386, 831
MaeI CTAG 1 cut(s) 68
MaeII ACGT 4 cut(s) 255, 472, 794, 879
MaeIII GTNAC 7 cut(s) 158, 248, 284, 473, 795, 960, 1092
MalI GATC 3 cut(s) 388, 692, 1020
MboI GATC 3 cut(s) 386, 690, 1018
MboII GAAGA 4 cut(s) 246, 340, 610, 781
MfeI CAATTG 1 cut(s) 1112
MhlI GDGCHC 2 cut(s) 299, 1081
MlsI TGGCCA 2 cut(s) 5, 62
MluCI AATT 5 cut(s) 114, 458, 566, 982, 1112
MluNI TGGCCA 2 cut(s) 5, 62
MlyI GAGTC 1 cut(s) 621
MmeI TCCRAC 3 cut(s) 127, 380, 526
Mox20I TGGCCA 2 cut(s) 5, 62
MscI TGGCCA 2 cut(s) 5, 62
MseI TTAA 3 cut(s) 320, 369, 821
Msp20I TGGCCA 2 cut(s) 5, 62
MspI CCGG 1 cut(s) 704
MspR9I CCNGG 4 cut(s) 181, 216, 281, 704
MunI CAATTG 1 cut(s) 1112
Mva1269I GAATGC 3 cut(s) 775, 836, 958
MvaI CCWGG 3 cut(s) 181, 216, 281
MwoI GCNNNNNNNGC 4 cut(s) 86, 549, 770, 831
NciI CCSGG 1 cut(s) 704
NcoI CCATGG 1 cut(s) 1000
NdeII GATC 3 cut(s) 386, 690, 1018
NlaIII CATG 8 cut(s) 67, 80, 495, 562, 769, 1004, 1063, 1102
NlaIV GGNNCC 2 cut(s) 151, 659
NmuCI GTSAC 3 cut(s) 248, 795, 1092
NspI RCATGY 1 cut(s) 562
PciI ACATGT 1 cut(s) 558
PcsI WCGNNNNNNNCGW 2 cut(s) 252, 552
PctI GAATGC 3 cut(s) 775, 836, 958
PfeI GAWTC 5 cut(s) 131, 337, 352, 488, 977
PkrI GCNGC 4 cut(s) 456, 577, 719, 1042
PleI GAGTC 1 cut(s) 621
PpsI GAGTC 1 cut(s) 621
Ppu21I YACGTR 1 cut(s) 473
PpuMI RGGWCCY 1 cut(s) 658
PscI ACATGT 1 cut(s) 558
Psp1406I AACGTT 1 cut(s) 879
Psp5II RGGWCCY 1 cut(s) 658
Psp6I CCWGG 3 cut(s) 179, 214, 279
PspGI CCWGG 3 cut(s) 179, 214, 279
PspN4I GGNNCC 2 cut(s) 151, 659
PspPI GGNCC 1 cut(s) 658
PspPPI RGGWCCY 1 cut(s) 658
PstNI CAGNNNCTG 1 cut(s) 280
RsaI GTAC 2 cut(s) 53, 471
RsaNI GTAC 2 cut(s) 52, 470
SaqAI TTAA 3 cut(s) 320, 369, 821
SatI GCNGC 4 cut(s) 455, 576, 718, 1041
Sau3AI GATC 3 cut(s) 386, 690, 1018
Sau96I GGNCC 1 cut(s) 658
SchI GAGTC 1 cut(s) 621
ScrFI CCNGG 4 cut(s) 181, 216, 281, 704
SduI GDGCHC 2 cut(s) 299, 1081
SfaNI GCATC 2 cut(s) 386, 831
SfcI CTRYAG 1 cut(s) 135
SinI GGWCC 1 cut(s) 658
SmlI CTYRAG 1 cut(s) 619
SmoI CTYRAG 1 cut(s) 619
SnaBI TACGTA 1 cut(s) 473
Sse9I AATT 5 cut(s) 114, 458, 566, 982, 1112
SsiI CCGC 1 cut(s) 299
SspI AATATT 1 cut(s) 100
SspMI CTAG 1 cut(s) 68
StyD4I CCNGG 4 cut(s) 179, 214, 279, 702
StyI CCWWGG 1 cut(s) 1000
TaaI ACNGT 5 cut(s) 106, 139, 248, 276, 469
TaiI ACGT 4 cut(s) 258, 475, 797, 882
TasI AATT 5 cut(s) 114, 458, 566, 982, 1112
TatI WGTACW 1 cut(s) 51
TfiI GAWTC 5 cut(s) 131, 337, 352, 488, 977
Tru1I TTAA 3 cut(s) 320, 369, 821
Tru9I TTAA 3 cut(s) 320, 369, 821
TscAI CASTG 1 cut(s) 745
TseFI GTSAC 3 cut(s) 248, 795, 1092
TseI GCWGC 4 cut(s) 454, 575, 717, 1040
Tsp45I GTSAC 3 cut(s) 248, 795, 1092
TspDTI ATGAA 3 cut(s) 523, 782, 1020
TspRI CASTG 1 cut(s) 745
VpaK11BI GGWCC 1 cut(s) 658
XagI CCTNNNNNAGG 1 cut(s) 812
XapI RAATTY 1 cut(s) 982
XceI RCATGY 1 cut(s) 562
XcmI CCANNNNNNNNNTGG 1 cut(s) 883
XspI CTAG 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.