Rmu_sc0013919.1_g000008

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013919.1
OG0000448
Physical Location & Seq
Reverse (-)
23015 .. 23708
694 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013919.1_g000008.1.cds

Sequence Viewer

Length: 522 bp
atgaacttactgaagggagaagttgtgccactgggagatcaggtcaaacaatttgcgacggttcgtggaaatatcacagaactaatcggtcttggggcaactgagataatgttttccaagtctttgttcgttattagtatagggagcaatgacctgttcgagttagtgaattggtatccaaatatcacttcattgggtatggatgagtacttggaaactcttaaactcaactacagtaaccatctgaaggacttatacaatctgggagctagaaaattcgggattgtaagtgttcctccaattggatgctgtcctgctgcacgtgttggaccaaaatcgaatgactccagtgtttgtgtagaggaactaaacaatcttgccttaacatttcttgcaaaaactgaggatctcctccaaaaattgagctcagagttgaaaggactcatgtactcgcttggaaatgcttatgaaatgactatgagtatacttgaagacccattagcatttggtaaggaaccctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

173

Amino Acids

18.97

Weight (kDa)

4.81

Isoelectric Point (pI)

32.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000448)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10790 FvH4_1g10790 FvH4_1g10790 FvH4_1g10791 FvH4_1g10800 FvH4_2g15970 FvH4_2g15980 FvH4_2g15990
malus_domestica MD02G1121900.v1.1 MD05G1128700.v1.1 MD10G1131900.v1.1 MD15G1235500.v1.1 MD15G1235600.v1.1
prunus_persica Prupe.7G177500_v2.0.a1 Prupe.7G177600_v2.0.a1 Prupe.8G172800_v2.0.a1
pyrus_communis pycom05g12460 pycom05g12470 pycom10g11300
rosa_chinensis RchiOBHm_Chr2g0097971 RchiOBHm_Chr2g0098021 RchiOBHm_Chr2g0098061 RchiOBHm_Chr6g0257301 RchiOBHm_Chr6g0279511 RchiOBHm_Chr6g0279521
rosa_laevigata RLG00000013139 RLG00000013140 RLG00000013141 RLG00000016747 RLG00000016749 RLG00000016750 RLG00000016751 RLG00000016752
rosa_multiflora Rmu_sc0002648.1_g000005 Rmu_sc0002648.1_g000006 Rmu_sc0004649.1_g000019 Rmu_sc0004649.1_g000021 Rmu_sc0009572.1_g000002 Rmu_sc0013919.1_g000008 Rmu_sc0013919.1_g000009
rosa_roxburghii Rroxscaffold_2G00144370 Rroxscaffold_2G00144380 Rroxscaffold_2G00144390 Rroxscaffold_2G00144410 Rroxscaffold_4G00294600 Rroxscaffold_7G00188840 Rroxscaffold_7G00188850 Rroxscaffold_7G00188860
rosa_rugosa Rorug02G0069400 Rorug02G0069600 Rorug02G0069700 Rorug02G0069800 Rorug06G0098000.1 Rorug06G0125000 Rorug06G0125100 Rorug06G0125200
rosa_samantha Rh2AG116400 Rh2AG116800 Rh2AG116900 Rh2AG117000 Rh2BG119300 Rh2BG119500 Rh2BG119600 Rh2BG119700 Rh2BG119800 Rh2CG120900 Rh2CG121000 Rh2CG121200 Rh2CG121300 Rh2CG121400 Rh2CG121500 Rh2DG120600 Rh2DG121100 Rh2DG121200 Rh2DG121500 Rh6AG091200 Rh6AG234100 Rh6BG238400 Rh6BG238500 Rh6BG238600 Rh6CG078800 Rh6CG240400 Rh6CG240500 Rh6CG240600 Rh6DG074600 Rh6DG232000 Rh6DG232100
rosa_wichuraiana Rw2G009120 Rw2G009130 Rw2G009140 Rw6G020420 Rw6G020430 Rw6G020440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 484
AclWI GGATC 1 cut(s) 414
AcsI RAATTY 1 cut(s) 275
AcuI CTGAAG 2 cut(s) 32, 266
AcvI CACGTG 1 cut(s) 323
AfaI GTAC 2 cut(s) 209, 449
AfiI CCNNNNNNNGG 2 cut(s) 247, 302
AflIII ACRYGT 1 cut(s) 322
AgsI TTSAA 2 cut(s) 436, 491
AjuI GAANNNNNNNTTGG 4 cut(s) 110, 142, 172, 204
AluBI AGCT 2 cut(s) 269, 426
AluI AGCT 2 cut(s) 269, 426
Alw21I GWGCWC 1 cut(s) 428
AlwI GGATC 1 cut(s) 414
ApeKI GCWGC 1 cut(s) 317
ApoI RAATTY 1 cut(s) 275
AspS9I GGNCC 1 cut(s) 329
AvaII GGWCC 1 cut(s) 329
BanII GRGCYC 1 cut(s) 428
BarI GAAGNNNNNNTAC 2 cut(s) 239, 271
BbrPI CACGTG 1 cut(s) 323
BbsI GAAGAC 1 cut(s) 498
Bbv12I GWGCWC 1 cut(s) 428
BbvI GCAGC 1 cut(s) 304
BccI CCATC 1 cut(s) 249
BciVI GTATCC 1 cut(s) 186
BfaI CTAG 1 cut(s) 270
BfmI CTRYAG 1 cut(s) 232
BfuI GTATCC 1 cut(s) 186
BisI GCNGC 1 cut(s) 318
BlsI GCNGC 1 cut(s) 319
BmcAI AGTACT 1 cut(s) 209
Bme18I GGWCC 1 cut(s) 329
BmgT120I GGNCC 1 cut(s) 329
BmiI GGNNCC 1 cut(s) 516
BmrI ACTGGG 1 cut(s) 41
BmsI GCATC 1 cut(s) 296
BmuI ACTGGG 1 cut(s) 41
BpiI GAAGAC 1 cut(s) 498
BpmI CTGGAG 1 cut(s) 331
BsaAI YACGTR 1 cut(s) 323
BsaXI ACNNNNNCTCC 4 cut(s) 9, 27, 39, 57
Bsc4I CCNNNNNNNGG 2 cut(s) 247, 302
Bse1I ACTGG 2 cut(s) 36, 348
Bse3DI GCAATG 1 cut(s) 154
BseGI GGATG 2 cut(s) 208, 311
BseLI CCNNNNNNNGG 2 cut(s) 247, 302
BseMI GCAATG 1 cut(s) 154
BseMII CTCAG 3 cut(s) 93, 393, 441
BseNI ACTGG 2 cut(s) 36, 348
BseRI GAGGAG 1 cut(s) 401
BseXI GCAGC 1 cut(s) 304
BsgI GTGCAG 1 cut(s) 303
BsiHKAI GWGCWC 1 cut(s) 428
BslI CCNNNNNNNGG 2 cut(s) 247, 302
Bsp1286I GDGCHC 1 cut(s) 428
Bsp143I GATC 2 cut(s) 37, 406
BspCNI CTCAG 3 cut(s) 94, 394, 440
BspLI GGNNCC 1 cut(s) 516
BspPI GGATC 1 cut(s) 414
BsrDI GCAATG 1 cut(s) 154
BsrI ACTGG 2 cut(s) 36, 348
BssMI GATC 2 cut(s) 37, 406
BssNAI GTATAC 1 cut(s) 485
Bst1107I GTATAC 1 cut(s) 485
Bst4CI ACNGT 2 cut(s) 61, 236
BstBAI YACGTR 1 cut(s) 323
BstDEI CTNAG 3 cut(s) 102, 402, 427
BstF5I GGATG 2 cut(s) 208, 311
BstKTI GATC 2 cut(s) 40, 409
BstMBI GATC 2 cut(s) 37, 406
BstSFI CTRYAG 1 cut(s) 232
BstV1I GCAGC 1 cut(s) 304
BstV2I GAAGAC 1 cut(s) 498
BstX2I RGATCY 1 cut(s) 406
BstYI RGATCY 1 cut(s) 406
BstZ17I GTATAC 1 cut(s) 485
BsuI GTATCC 1 cut(s) 186
BtsCI GGATG 2 cut(s) 208, 311
BtsIMutI CAGTG 2 cut(s) 29, 355
Cfr13I GGNCC 1 cut(s) 329
Csp6I GTAC 2 cut(s) 208, 448
CviAII CATG 1 cut(s) 445
CviJI RGCY 2 cut(s) 269, 426
CviKI_1 RGCY 2 cut(s) 269, 426
CviQI GTAC 2 cut(s) 208, 448
DdeI CTNAG 3 cut(s) 102, 402, 427
DpnI GATC 2 cut(s) 39, 408
DpnII GATC 2 cut(s) 37, 406
Ecl136II GAGCTC 1 cut(s) 426
Eco24I GRGCYC 1 cut(s) 428
Eco47I GGWCC 1 cut(s) 329
Eco53kI GAGCTC 1 cut(s) 426
Eco57I CTGAAG 2 cut(s) 32, 266
Eco72I CACGTG 1 cut(s) 323
EcoICRI GAGCTC 1 cut(s) 426
EcoT38I GRGCYC 1 cut(s) 428
FaeI CATG 1 cut(s) 448
FaiI YATR 7 cut(s) 140, 200, 256, 446, 468, 479, 485
FatI CATG 1 cut(s) 444
FblI GTMKAC 1 cut(s) 484
Fnu4HI GCNGC 1 cut(s) 318
FokI GGATG 2 cut(s) 215, 318
FriOI GRGCYC 1 cut(s) 428
Fsp4HI GCNGC 1 cut(s) 318
FspBI CTAG 1 cut(s) 270
GluI GCNGC 1 cut(s) 318
GsuI CTGGAG 1 cut(s) 331
Hin1II CATG 1 cut(s) 448
HinfI GANTC 2 cut(s) 344, 441
Hpy166II GTNNAC 1 cut(s) 485
Hpy188I TCNGA 2 cut(s) 246, 430
Hpy188III TCNNGA 1 cut(s) 280
Hpy8I GTNNAC 1 cut(s) 485
Hpy99I CGWCG 1 cut(s) 61
HpyAV CCTTC 2 cut(s) 7, 241
HpyCH4III ACNGT 2 cut(s) 61, 236
HpyCH4IV ACGT 1 cut(s) 322
HpyCH4V TGCA 2 cut(s) 320, 395
HpyF3I CTNAG 3 cut(s) 102, 402, 427
HpySE526I ACGT 1 cut(s) 322
Hsp92II CATG 1 cut(s) 448
Kzo9I GATC 2 cut(s) 37, 406
LmnI GCTCC 2 cut(s) 144, 266
LpnPI CCDG 6 cut(s) 17, 26, 167, 248, 327, 361
Lsp1109I GCAGC 1 cut(s) 304
LweI GCATC 1 cut(s) 296
MaeI CTAG 1 cut(s) 270
MaeII ACGT 1 cut(s) 322
MaeIII GTNAC 1 cut(s) 236
MalI GATC 2 cut(s) 39, 408
MboI GATC 2 cut(s) 37, 406
MboII GAAGA 1 cut(s) 503
MfeI CAATTG 1 cut(s) 300
MflI RGATCY 1 cut(s) 406
MhlI GDGCHC 1 cut(s) 428
MluCI AATT 5 cut(s) 50, 169, 275, 300, 419
MlyI GAGTC 2 cut(s) 338, 435
MmeI TCCRAC 1 cut(s) 307
MnlI CCTC 4 cut(s) 306, 355, 397, 422
MseI TTAA 2 cut(s) 222, 383
MunI CAATTG 1 cut(s) 300
NdeII GATC 2 cut(s) 37, 406
NlaIII CATG 1 cut(s) 448
NlaIV GGNNCC 1 cut(s) 516
PkrI GCNGC 1 cut(s) 319
PleI GAGTC 2 cut(s) 338, 435
PmaCI CACGTG 1 cut(s) 323
PmlI CACGTG 1 cut(s) 323
PpsI GAGTC 2 cut(s) 338, 435
Ppu21I YACGTR 1 cut(s) 323
Psp124BI GAGCTC 1 cut(s) 428
PspCI CACGTG 1 cut(s) 323
PspN4I GGNNCC 1 cut(s) 516
PspPI GGNCC 1 cut(s) 329
PsuI RGATCY 1 cut(s) 406
RsaI GTAC 2 cut(s) 209, 449
RsaNI GTAC 2 cut(s) 208, 448
SacI GAGCTC 1 cut(s) 428
SaqAI TTAA 2 cut(s) 222, 383
SatI GCNGC 1 cut(s) 318
Sau3AI GATC 2 cut(s) 37, 406
Sau96I GGNCC 1 cut(s) 329
ScaI AGTACT 1 cut(s) 209
SchI GAGTC 2 cut(s) 338, 435
SduI GDGCHC 1 cut(s) 428
SetI ASST 5 cut(s) 45, 156, 271, 325, 428
SfaNI GCATC 1 cut(s) 296
SfcI CTRYAG 1 cut(s) 232
SinI GGWCC 1 cut(s) 329
Sse9I AATT 5 cut(s) 50, 169, 275, 300, 419
SspMI CTAG 1 cut(s) 270
SstI GAGCTC 1 cut(s) 428
TaaI ACNGT 2 cut(s) 61, 236
TaiI ACGT 1 cut(s) 325
TaqI TCGA 2 cut(s) 159, 338
TaqII GACCGA 1 cut(s) 77
TasI AATT 5 cut(s) 50, 169, 275, 300, 419
TatI WGTACW 2 cut(s) 207, 447
Tru1I TTAA 2 cut(s) 222, 383
Tru9I TTAA 2 cut(s) 222, 383
TscAI CASTG 2 cut(s) 36, 355
TseI GCWGC 1 cut(s) 317
TspDTI ATGAA 3 cut(s) 17, 180, 483
TspRI CASTG 2 cut(s) 36, 355
VpaK11BI GGWCC 1 cut(s) 329
XapI RAATTY 1 cut(s) 275
XmiI GTMKAC 1 cut(s) 484
XspI CTAG 1 cut(s) 270
ZrmI AGTACT 1 cut(s) 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.