RLG00000016749

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000448
Physical Location & Seq
Forward (+)
9681816 .. 9685361
3546 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016749

Sequence Viewer

Length: 1113 bp
ATGGCCAAGTCTGCAATATTCTCTCTTTGGCTCAATATTATTGTGTATCTCGGCATACTTGGATTGCACGTCTCACACTCTCAGCCATGTGTGCCACCACTTTACATATTTGGTGACTCCACAGCTGATGTTGGAACCAACAATTATTTGCCCGGTTCTAGGGCGAGGGCCGATTTCCCTTATAACGGGATTGATTTTCCTCAATCTAGACCAACTGGGAGATTTAGCAACGGTTACAACACTATTGATTATCTAGCCCAGTTTCTGAAATTCTACGAAAGCCCGCCGCCTTTTCTCTCGTTTTCAGACAGCAATATTTCGCATTTTCTCATCAAGACTGTTCCGACGACGGGAATCAATTTTGCTTCAGGAGGGTCAGGACTTCTGGATTCTACAGGACATAAGTATAAAAGGGTGATTTCTTTTGGGGAACAAGTCCAACAATTTTCAAGTGTCTGCAGCAATATTTCAGAATTACTGGGTGCGAGCGCTGTCGCAAATATCTCCAAGTCTCTCTTCATTATCAGCGTTGGAAGCAATGACATCTTCGAACATTATGATGCTAACCATACTAGTGACCCTACTGTTACTGGGCAAAACTACGTCACCACTCTCATCTCCACCTACGAAACTCATCTAAGGAATTTATATGAGCTAGGAGCCAGAAGATTTGGGATTATTAGTGTTGGGGCACTCGGGTGCTGTCCGATCCTACGTAGTAAATATGGAGGTCGTTGTTTGGAGCCCATGAATAGGGATGCTCAGTTGTTCTATACTGCACTCCGAGACCTCTTGCAAAAGTTGAGTTCAGAGTGCAAAGGGTTGATGTATGCGCTTGGAGATTCATATAATATGTCAAAATATATTCTCGACCACCCCGATAAATCTGTTTTTTCTGAGATTAAAAGAGCTTGCTGTGGAAAAGGAAAGTTGAACGCATATGAGGCATGTAAACCGAAATCGGTTTTGTGTAAAGATCGCACAACCTACTTGTTTTGGGACCAGTACCATCCAACACAGGAGGCTTCTTCTCTCGCAGCCAGTATTCTTTATTCTGGTACCAAACCATTCGTGGTGCCGATGGGTTTTGGTGAATTGGCGCTTCTGCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

371

Amino Acids

40.76

Weight (kDa)

8.23

Isoelectric Point (pI)

42.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 35 - 348 2.7e-29 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000448)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10790 FvH4_1g10790 FvH4_1g10790 FvH4_1g10791 FvH4_1g10800 FvH4_2g15970 FvH4_2g15980 FvH4_2g15990
malus_domestica MD02G1121900.v1.1 MD05G1128700.v1.1 MD10G1131900.v1.1 MD15G1235500.v1.1 MD15G1235600.v1.1
prunus_persica Prupe.7G177500_v2.0.a1 Prupe.7G177600_v2.0.a1 Prupe.8G172800_v2.0.a1
pyrus_communis pycom05g12460 pycom05g12470 pycom10g11300
rosa_chinensis RchiOBHm_Chr2g0097971 RchiOBHm_Chr2g0098021 RchiOBHm_Chr2g0098061 RchiOBHm_Chr6g0257301 RchiOBHm_Chr6g0279511 RchiOBHm_Chr6g0279521
rosa_laevigata RLG00000013139 RLG00000013140 RLG00000013141 RLG00000016747 RLG00000016749 RLG00000016750 RLG00000016751 RLG00000016752
rosa_multiflora Rmu_sc0002648.1_g000005 Rmu_sc0002648.1_g000006 Rmu_sc0004649.1_g000019 Rmu_sc0004649.1_g000021 Rmu_sc0009572.1_g000002 Rmu_sc0013919.1_g000008 Rmu_sc0013919.1_g000009
rosa_roxburghii Rroxscaffold_2G00144370 Rroxscaffold_2G00144380 Rroxscaffold_2G00144390 Rroxscaffold_2G00144410 Rroxscaffold_4G00294600 Rroxscaffold_7G00188840 Rroxscaffold_7G00188850 Rroxscaffold_7G00188860
rosa_rugosa Rorug02G0069400 Rorug02G0069600 Rorug02G0069700 Rorug02G0069800 Rorug06G0098000.1 Rorug06G0125000 Rorug06G0125100 Rorug06G0125200
rosa_samantha Rh2AG116400 Rh2AG116800 Rh2AG116900 Rh2AG117000 Rh2BG119300 Rh2BG119500 Rh2BG119600 Rh2BG119700 Rh2BG119800 Rh2CG120900 Rh2CG121000 Rh2CG121200 Rh2CG121300 Rh2CG121400 Rh2CG121500 Rh2DG120600 Rh2DG121100 Rh2DG121200 Rh2DG121500 Rh6AG091200 Rh6AG234100 Rh6BG238400 Rh6BG238500 Rh6BG238600 Rh6CG078800 Rh6CG240400 Rh6CG240500 Rh6CG240600 Rh6DG074600 Rh6DG232000 Rh6DG232100
rosa_wichuraiana Rw2G009120 Rw2G009130 Rw2G009140 Rw6G020420 Rw6G020430 Rw6G020440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 183
Acc65I GGTACC 1 cut(s) 1058
AccB1I GGYRCC 2 cut(s) 1058, 1075
AciI CCGC 2 cut(s) 284, 287
AclWI GGATC 1 cut(s) 703
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 269, 643
AcuI CTGAAG 1 cut(s) 351
AfaI GTAC 2 cut(s) 1007, 1060
AfeI AGCGCT 1 cut(s) 490
AfiI CCNNNNNNNGG 4 cut(s) 159, 185, 350, 753
AgsI TTSAA 2 cut(s) 450, 934
AhlI ACTAGT 1 cut(s) 572
AjiI CACGTC 1 cut(s) 70
AjuI GAANNNNNNNTTGG 2 cut(s) 500, 532
AleI CACNNNNGTG 1 cut(s) 697
AluBI AGCT 3 cut(s) 125, 655, 911
AluI AGCT 3 cut(s) 125, 655, 911
Alw26I GTCTC 3 cut(s) 76, 516, 780
AlwI GGATC 1 cut(s) 703
AlwNI CAGNNNCTG 1 cut(s) 265
Ama87I CYCGRG 1 cut(s) 695
Aor51HI AGCGCT 1 cut(s) 490
AoxI GGCC 2 cut(s) 3, 168
ApeKI GCWGC 2 cut(s) 459, 1037
ApoI RAATTY 2 cut(s) 269, 643
Asp718I GGTACC 1 cut(s) 1058
AspLEI GCGC 3 cut(s) 491, 835, 1102
AspS9I GGNCC 2 cut(s) 168, 1000
AsuC2I CCSGG 1 cut(s) 153
AsuHPI GGTGA 4 cut(s) 125, 427, 598, 1103
AsuII TTCGAA 1 cut(s) 549
AvaI CYCGRG 1 cut(s) 695
AvaII GGWCC 1 cut(s) 1000
BaeGI GKGCMC 1 cut(s) 694
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 2 cut(s) 1058, 1075
BanII GRGCYC 1 cut(s) 747
BbvI GCAGC 2 cut(s) 471, 1049
BccI CCATC 2 cut(s) 1017, 1075
BcnI CCSGG 1 cut(s) 153
BcoDI GTCTC 3 cut(s) 76, 516, 780
BcuI ACTAGT 1 cut(s) 572
BfaI CTAG 5 cut(s) 159, 207, 254, 573, 656
BfmI CTRYAG 2 cut(s) 393, 457
BfoI RGCGCY 2 cut(s) 492, 1103
BisI GCNGC 3 cut(s) 287, 460, 1038
BlsI GCNGC 3 cut(s) 288, 461, 1039
Bme1390I CCNGG 1 cut(s) 153
Bme18I GGWCC 1 cut(s) 1000
BmeT110I CYCGRG 1 cut(s) 695
BmgBI CACGTC 1 cut(s) 70
BmgT120I GGNCC 2 cut(s) 168, 1000
BmiI GGNNCC 6 cut(s) 136, 661, 744, 1001, 1060, 1077
BmrFI CCNGG 1 cut(s) 153
BmrI ACTGGG 4 cut(s) 225, 253, 488, 600
BmsI GCATC 2 cut(s) 550, 748
BmuI ACTGGG 4 cut(s) 225, 253, 488, 600
Bpu14I TTCGAA 1 cut(s) 549
BpuMI CCSGG 1 cut(s) 153
BsaAI YACGTR 1 cut(s) 716
BsaI GGTCTC 1 cut(s) 780
Bsc4I CCNNNNNNNGG 4 cut(s) 159, 185, 350, 753
Bse1I ACTGG 6 cut(s) 220, 259, 483, 595, 1003, 1041
Bse3DI GCAATG 1 cut(s) 544
BseGI GGATG 2 cut(s) 763, 1009
BseLI CCNNNNNNNGG 4 cut(s) 159, 185, 350, 753
BseMI GCAATG 1 cut(s) 544
BseMII CTCAG 3 cut(s) 95, 776, 888
BseNI ACTGG 6 cut(s) 220, 259, 483, 595, 1003, 1041
BseSI GKGCMC 1 cut(s) 694
BseXI GCAGC 2 cut(s) 471, 1049
BsgI GTGCAG 1 cut(s) 762
BshFI GGCC 2 cut(s) 5, 170
BshNI GGYRCC 2 cut(s) 1058, 1075
BsiHKCI CYCGRG 1 cut(s) 695
BsiSI CCGG 1 cut(s) 153
BslFI GGGAC 1 cut(s) 1013
BslI CCNNNNNNNGG 4 cut(s) 159, 185, 350, 753
BsmAI GTCTC 3 cut(s) 76, 516, 780
BsmBI CGTCTC 1 cut(s) 76
BsmFI GGGAC 1 cut(s) 1013
BsnI GGCC 2 cut(s) 5, 170
Bso31I GGTCTC 1 cut(s) 780
BsoBI CYCGRG 1 cut(s) 695
Bsp119I TTCGAA 1 cut(s) 549
Bsp1286I GDGCHC 2 cut(s) 694, 747
Bsp143I GATC 2 cut(s) 708, 976
BspACI CCGC 2 cut(s) 284, 287
BspANI GGCC 2 cut(s) 5, 170
BspCNI CTCAG 3 cut(s) 94, 775, 889
BspLI GGNNCC 6 cut(s) 136, 661, 744, 1001, 1060, 1077
BspMAI CTGCAG 1 cut(s) 461
BspPI GGATC 1 cut(s) 703
BspT104I TTCGAA 1 cut(s) 549
BspT107I GGYRCC 2 cut(s) 1058, 1075
BspTNI GGTCTC 1 cut(s) 780
BsrDI GCAATG 1 cut(s) 544
BsrI ACTGG 6 cut(s) 220, 259, 483, 595, 1003, 1041
BssMI GATC 2 cut(s) 708, 976
Bst4CI ACNGT 3 cut(s) 233, 340, 586
Bst6I CTCTTC 1 cut(s) 521
BstBAI YACGTR 1 cut(s) 716
BstBI TTCGAA 1 cut(s) 549
BstC8I GCNNGC 3 cut(s) 284, 487, 913
BstDEI CTNAG 4 cut(s) 81, 638, 762, 897
BstF5I GGATG 2 cut(s) 763, 1009
BstH2I RGCGCY 2 cut(s) 492, 1103
BstHHI GCGC 3 cut(s) 491, 835, 1102
BstKTI GATC 2 cut(s) 711, 979
BstMAI GTCTC 3 cut(s) 76, 516, 780
BstMBI GATC 2 cut(s) 708, 976
BstMWI GCNNNNNNNGC 4 cut(s) 11, 91, 534, 944
BstNSI RCATGY 1 cut(s) 951
BstSCI CCNGG 1 cut(s) 151
BstSFI CTRYAG 2 cut(s) 393, 457
BstSLI GKGCMC 1 cut(s) 694
BstSNI TACGTA 1 cut(s) 716
BstV1I GCAGC 2 cut(s) 471, 1049
BsuRI GGCC 2 cut(s) 5, 170
BtrI CACGTC 1 cut(s) 70
BtsCI GGATG 2 cut(s) 763, 1009
Cac8I GCNNGC 3 cut(s) 284, 487, 913
CaiI CAGNNNCTG 1 cut(s) 265
CfoI GCGC 3 cut(s) 491, 835, 1102
Cfr13I GGNCC 2 cut(s) 168, 1000
Csp6I GTAC 2 cut(s) 1006, 1059
CviAII CATG 3 cut(s) 87, 748, 948
CviQI GTAC 2 cut(s) 1006, 1059
DdeI CTNAG 4 cut(s) 81, 638, 762, 897
DpnI GATC 2 cut(s) 710, 978
DpnII GATC 2 cut(s) 708, 976
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 521
EarI CTCTTC 1 cut(s) 521
Eco105I TACGTA 1 cut(s) 716
Eco24I GRGCYC 1 cut(s) 747
Eco31I GGTCTC 1 cut(s) 780
Eco47I GGWCC 1 cut(s) 1000
Eco47III AGCGCT 1 cut(s) 490
Eco57I CTGAAG 1 cut(s) 351
Eco88I CYCGRG 1 cut(s) 695
EcoT38I GRGCYC 1 cut(s) 747
Esp3I CGTCTC 1 cut(s) 76
FaeI CATG 3 cut(s) 90, 751, 951
FalI AAGNNNNNCTT 2 cut(s) 500, 532
FaqI GGGAC 1 cut(s) 1013
FatI CATG 3 cut(s) 86, 747, 947
FauI CCCGC 1 cut(s) 291
FauNDI CATATG 1 cut(s) 940
Fnu4HI GCNGC 3 cut(s) 287, 460, 1038
FokI GGATG 2 cut(s) 770, 996
FriOI GRGCYC 1 cut(s) 747
Fsp4HI GCNGC 3 cut(s) 287, 460, 1038
FspBI CTAG 5 cut(s) 159, 207, 254, 573, 656
GlaI GCGC 3 cut(s) 490, 834, 1101
GluI GCNGC 3 cut(s) 287, 460, 1038
HaeII RGCGCY 2 cut(s) 492, 1103
HaeIII GGCC 2 cut(s) 5, 170
HapII CCGG 1 cut(s) 153
HhaI GCGC 3 cut(s) 491, 835, 1102
Hin1II CATG 3 cut(s) 90, 751, 951
Hin6I GCGC 3 cut(s) 489, 833, 1100
HinP1I GCGC 3 cut(s) 489, 833, 1100
HinfI GANTC 4 cut(s) 116, 354, 389, 842
HpaII CCGG 1 cut(s) 153
HphI GGTGA 4 cut(s) 125, 427, 598, 1103
Hpy166II GTNNAC 1 cut(s) 953
Hpy188I TCNGA 8 cut(s) 267, 307, 345, 472, 708, 785, 811, 898
Hpy188III TCNNGA 6 cut(s) 207, 334, 369, 378, 386, 869
Hpy8I GTNNAC 1 cut(s) 953
Hpy99I CGWCG 2 cut(s) 349, 352
HpyCH4III ACNGT 3 cut(s) 233, 340, 586
HpyCH4IV ACGT 3 cut(s) 69, 603, 715
HpyCH4V TGCA 6 cut(s) 14, 67, 459, 779, 796, 816
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 91, 534, 944
HpyF3I CTNAG 4 cut(s) 81, 638, 762, 897
HpySE526I ACGT 3 cut(s) 69, 603, 715
Hsp92II CATG 3 cut(s) 90, 751, 951
HspAI GCGC 3 cut(s) 489, 833, 1100
KpnI GGTACC 1 cut(s) 1062
Kzo9I GATC 2 cut(s) 708, 976
LmnI GCTCC 2 cut(s) 659, 742
Lsp1109I GCAGC 2 cut(s) 471, 1049
LweI GCATC 2 cut(s) 550, 748
MaeI CTAG 5 cut(s) 159, 207, 254, 573, 656
MaeII ACGT 3 cut(s) 69, 603, 715
MaeIII GTNAC 5 cut(s) 113, 233, 575, 586, 604
MalI GATC 2 cut(s) 710, 978
MboI GATC 2 cut(s) 708, 976
MboII GAAGA 4 cut(s) 508, 538, 678, 1020
MhlI GDGCHC 2 cut(s) 694, 747
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 7 cut(s) 142, 269, 358, 443, 473, 643, 1094
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 110
MmeI TCCRAC 5 cut(s) 112, 368, 463, 511, 1037
MnlI CCTC 7 cut(s) 159, 210, 365, 722, 800, 937, 1015
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 903
MslI CAYNNNNRTG 3 cut(s) 558, 573, 697
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 125
MspI CCGG 1 cut(s) 153
MspR9I CCNGG 1 cut(s) 153
MwoI GCNNNNNNNGC 4 cut(s) 11, 91, 534, 944
NciI CCSGG 1 cut(s) 153
NdeI CATATG 1 cut(s) 940
NdeII GATC 2 cut(s) 708, 976
NlaIII CATG 3 cut(s) 90, 751, 951
NlaIV GGNNCC 6 cut(s) 136, 661, 744, 1001, 1060, 1077
NmeAIII GCCGAG 1 cut(s) 30
NmuCI GTSAC 3 cut(s) 113, 575, 604
NspI RCATGY 1 cut(s) 951
NspV TTCGAA 1 cut(s) 549
OliI CACNNNNGTG 1 cut(s) 697
PcsI WCGNNNNNNNCGW 1 cut(s) 876
PfeI GAWTC 3 cut(s) 354, 389, 842
PkrI GCNGC 3 cut(s) 288, 461, 1039
PleI GAGTC 1 cut(s) 110
PpsI GAGTC 1 cut(s) 110
Ppu21I YACGTR 1 cut(s) 716
PsiI TTATAA 1 cut(s) 183
PspN4I GGNNCC 6 cut(s) 136, 661, 744, 1001, 1060, 1077
PspPI GGNCC 2 cut(s) 168, 1000
PstI CTGCAG 1 cut(s) 461
PstNI CAGNNNCTG 1 cut(s) 265
PvuII CAGCTG 1 cut(s) 125
RsaI GTAC 2 cut(s) 1007, 1060
RsaNI GTAC 2 cut(s) 1006, 1059
RseI CAYNNNNRTG 3 cut(s) 558, 573, 697
SaqAI TTAA 1 cut(s) 903
SatI GCNGC 3 cut(s) 287, 460, 1038
Sau3AI GATC 2 cut(s) 708, 976
Sau96I GGNCC 2 cut(s) 168, 1000
SchI GAGTC 1 cut(s) 110
ScrFI CCNGG 1 cut(s) 153
SduI GDGCHC 2 cut(s) 694, 747
SfaNI GCATC 2 cut(s) 550, 748
SfcI CTRYAG 2 cut(s) 393, 457
SfuI TTCGAA 1 cut(s) 549
SinI GGWCC 1 cut(s) 1000
SmiMI CAYNNNNRTG 3 cut(s) 558, 573, 697
SnaBI TACGTA 1 cut(s) 716
SpeI ACTAGT 1 cut(s) 572
Sse9I AATT 7 cut(s) 142, 269, 358, 443, 473, 643, 1094
SsiI CCGC 2 cut(s) 284, 287
SspI AATATT 4 cut(s) 18, 37, 316, 466
SspMI CTAG 5 cut(s) 159, 207, 254, 573, 656
StyD4I CCNGG 1 cut(s) 151
TaaI ACNGT 3 cut(s) 233, 340, 586
TaiI ACGT 3 cut(s) 72, 606, 718
TaqI TCGA 2 cut(s) 549, 870
TasI AATT 7 cut(s) 142, 269, 358, 443, 473, 643, 1094
TauI GCSGC 1 cut(s) 289
TfiI GAWTC 3 cut(s) 354, 389, 842
Tru1I TTAA 1 cut(s) 903
Tru9I TTAA 1 cut(s) 903
TseFI GTSAC 3 cut(s) 113, 575, 604
TseI GCWGC 2 cut(s) 459, 1037
Tsp45I GTSAC 3 cut(s) 113, 575, 604
TspDTI ATGAA 3 cut(s) 508, 764, 834
VpaK11BI GGWCC 1 cut(s) 1000
XapI RAATTY 2 cut(s) 269, 643
XbaI TCTAGA 1 cut(s) 206
XceI RCATGY 1 cut(s) 951
XcmI CCANNNNNNNNNTGG 1 cut(s) 1069
XspI CTAG 5 cut(s) 159, 207, 254, 573, 656
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.