Rw6G020420

GDSL esterase lipase At5g55050-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000448
Physical Location & Seq
Reverse (-)
40743830 .. 40745659
1830 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G020420.1

Sequence Viewer

Length: 1044 bp
ATGGCAAACATATGGGGTTTTCCTCTAGTTCTTCTATCCTTGGTCATAGCTGTTCTTAATTTAGCAGAAGCAGCTGTACCAGCAATCTTCATACTAGGTGACTCCACTGCTGATGTTGGCACCAACAACTTCTTGCCAGGTAGCATGGCCAGGGCTGATTTCCCCTACAATGGAATCGACTTTTGTAACTCAACACCCACTGGAAGGTTCAGCAATGGCCTTAATACAGCTGATTTTCTTGCCAAGCTATTGGGTTACGAGAAAAGTCCAAAGCCCTTTCTTTCCCTCTACTCTACTTCTCTTCTCAAGTGGTTTGGAGGCTTCAGCTTTGCTTCTGGAGGAATGATAAAAAATTGTATTCCACTAGCAGAGCAGATACAGCAATTTTCGTCTGTCCGGAGTAATCTCACCGCCTTAATGGGCCCGGTAGCAACTGAGACGTATCTTTCAAAGTCTTTGTTCTTCATCAGCATTGGCAGCAATGACATTTTCGAATACTACAGCTCAAACAGTTCAATTCCTGAGGAACAATTCTTGTCCTCTTTAGTACTCGCTTATGAGAATCACTTGAAGACGCTACTCAATCTTGGAGCAAGGAAGTTAGGAATTATCAGTGTCGCCCCGATTGGCTGCTGCCCATCTCAGAGAATTTTTAATGCTACTGGCGGCTGTATAGAGGAGCTGAATGATCATGCAAAAGCTTTCCATTCAAAGCTGGATGTGCTTATGCACAAGCTCAGCTCAGAATTTGAGGGCTTGAAGTACTCACTTGGAAATGCATTTGAAATGACTATAAATGTCATACAGAACCCTCTTGCATTCAATTTTACACAAGTGGCAGCTGCATGTTGTGGAACTGGGAAGCTCAATGCTGAAAACTTCTGTAAACCAGATGCAAATCTCTGTTCGAATCGCGATCAATACTTGTTCTGGGATCGATTTCATCCAACACAGGCTGCTTATAAGTTGGCTGCTGTAACCCTCTATGGTGGTGGACCACAATTTGTAACCCCAATTAATTTTGCTCAGTTGGCTGAGGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

347

Amino Acids

37.67

Weight (kDa)

5.76

Isoelectric Point (pI)

22.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 29 - 325 2.3e-29 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000448)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10790 FvH4_1g10790 FvH4_1g10790 FvH4_1g10791 FvH4_1g10800 FvH4_2g15970 FvH4_2g15980 FvH4_2g15990
malus_domestica MD02G1121900.v1.1 MD05G1128700.v1.1 MD10G1131900.v1.1 MD15G1235500.v1.1 MD15G1235600.v1.1
prunus_persica Prupe.7G177500_v2.0.a1 Prupe.7G177600_v2.0.a1 Prupe.8G172800_v2.0.a1
pyrus_communis pycom05g12460 pycom05g12470 pycom10g11300
rosa_chinensis RchiOBHm_Chr2g0097971 RchiOBHm_Chr2g0098021 RchiOBHm_Chr2g0098061 RchiOBHm_Chr6g0257301 RchiOBHm_Chr6g0279511 RchiOBHm_Chr6g0279521
rosa_laevigata RLG00000013139 RLG00000013140 RLG00000013141 RLG00000016747 RLG00000016749 RLG00000016750 RLG00000016751 RLG00000016752
rosa_multiflora Rmu_sc0002648.1_g000005 Rmu_sc0002648.1_g000006 Rmu_sc0004649.1_g000019 Rmu_sc0004649.1_g000021 Rmu_sc0009572.1_g000002 Rmu_sc0013919.1_g000008 Rmu_sc0013919.1_g000009
rosa_roxburghii Rroxscaffold_2G00144370 Rroxscaffold_2G00144380 Rroxscaffold_2G00144390 Rroxscaffold_2G00144410 Rroxscaffold_4G00294600 Rroxscaffold_7G00188840 Rroxscaffold_7G00188850 Rroxscaffold_7G00188860
rosa_rugosa Rorug02G0069400 Rorug02G0069600 Rorug02G0069700 Rorug02G0069800 Rorug06G0098000.1 Rorug06G0125000 Rorug06G0125100 Rorug06G0125200
rosa_samantha Rh2AG116400 Rh2AG116800 Rh2AG116900 Rh2AG117000 Rh2BG119300 Rh2BG119500 Rh2BG119600 Rh2BG119700 Rh2BG119800 Rh2CG120900 Rh2CG121000 Rh2CG121200 Rh2CG121300 Rh2CG121400 Rh2CG121500 Rh2DG120600 Rh2DG121100 Rh2DG121200 Rh2DG121500 Rh6AG091200 Rh6AG234100 Rh6BG238400 Rh6BG238500 Rh6BG238600 Rh6CG078800 Rh6CG240400 Rh6CG240500 Rh6CG240600 Rh6DG074600 Rh6DG232000 Rh6DG232100
rosa_wichuraiana Rw2G009120 Rw2G009130 Rw2G009140 Rw6G020420 Rw6G020430 Rw6G020440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 963
AccB1I GGYRCC 1 cut(s) 119
AccII CGCG 1 cut(s) 915
AccIII TCCGGA 1 cut(s) 396
AciI CCGC 2 cut(s) 411, 666
AclWI GGATC 1 cut(s) 942
AcoI YGGCCR 1 cut(s) 147
AcsI RAATTY 2 cut(s) 648, 746
AcuI CTGAAG 1 cut(s) 307
AfaI GTAC 3 cut(s) 78, 549, 764
AfiI CCNNNNNNNGG 2 cut(s) 170, 204
AgsI TTSAA 7 cut(s) 450, 516, 571, 711, 760, 785, 823
AjnI CCWGG 2 cut(s) 136, 149
Alw26I GTCTC 1 cut(s) 431
AlwI GGATC 1 cut(s) 942
Aor13HI TCCGGA 1 cut(s) 396
AoxI GGCC 3 cut(s) 147, 217, 421
ApaI GGGCCC 1 cut(s) 425
ApeKI GCWGC 8 cut(s) 71, 477, 630, 633, 839, 842, 956, 971
ApoI RAATTY 2 cut(s) 648, 746
AseI ATTAAT 1 cut(s) 1017
AspS9I GGNCC 3 cut(s) 421, 422, 995
AsuC2I CCSGG 1 cut(s) 425
AsuHPI GGTGA 2 cut(s) 110, 400
AsuII TTCGAA 2 cut(s) 492, 908
AvaII GGWCC 1 cut(s) 995
AxyI CCTNAGG 1 cut(s) 522
BaeGI GKGCMC 1 cut(s) 425
BalI TGGCCA 1 cut(s) 149
BanI GGYRCC 1 cut(s) 119
BanII GRGCYC 1 cut(s) 425
BarI GAAGNNNNNNTAC 2 cut(s) 60, 92
BbsI GAAGAC 1 cut(s) 578
BbvCI CCTCAGC 1 cut(s) 1035
BbvI GCAGC 8 cut(s) 83, 489, 617, 620, 829, 851, 943, 958
BccI CCATC 1 cut(s) 646
BciT130I CCWGG 2 cut(s) 138, 151
BclI TGATCA 1 cut(s) 688
BcnI CCSGG 1 cut(s) 425
BcoDI GTCTC 1 cut(s) 431
BfaI CTAG 3 cut(s) 26, 95, 365
BfmI CTRYAG 1 cut(s) 499
BisI GCNGC 9 cut(s) 72, 478, 631, 634, 667, 840, 843, 957, 972
BlpI GCTNAGC 1 cut(s) 737
BlsI GCNGC 9 cut(s) 73, 479, 632, 635, 668, 841, 844, 958, 973
BmcAI AGTACT 2 cut(s) 549, 764
Bme1390I CCNGG 3 cut(s) 138, 151, 425
Bme18I GGWCC 1 cut(s) 995
BmgT120I GGNCC 3 cut(s) 421, 422, 995
BmiI GGNNCC 2 cut(s) 121, 423
BmrFI CCNGG 3 cut(s) 138, 151, 425
BmrI ACTGGG 1 cut(s) 867
BmsI GCATC 1 cut(s) 883
BmuI ACTGGG 1 cut(s) 867
BpiI GAAGAC 1 cut(s) 578
BpmI CTGGAG 1 cut(s) 357
Bpu10I CCTNAGC 1 cut(s) 1035
Bpu1102I GCTNAGC 1 cut(s) 737
Bpu14I TTCGAA 2 cut(s) 492, 908
BpuEI CTTGAG 1 cut(s) 290
BpuMI CCSGG 1 cut(s) 425
Bsa29I ATCGAT 1 cut(s) 937
BsaBI GATNNNNATC 1 cut(s) 897
BsaJI CCNNGG 2 cut(s) 39, 150
BsaWI WCCGGW 1 cut(s) 396
Bsc4I CCNNNNNNNGG 2 cut(s) 170, 204
Bse1I ACTGG 3 cut(s) 205, 667, 862
Bse21I CCTNAGG 1 cut(s) 522
Bse3DI GCAATG 2 cut(s) 220, 487
Bse8I GATNNNNATC 1 cut(s) 897
BseAI TCCGGA 1 cut(s) 396
BseBI CCWGG 2 cut(s) 138, 151
BseCI ATCGAT 1 cut(s) 937
BseDI CCNNGG 2 cut(s) 39, 150
BseGI GGATG 2 cut(s) 724, 943
BseJI GATNNNNATC 1 cut(s) 897
BseLI CCNNNNNNNGG 2 cut(s) 170, 204
BseMI GCAATG 2 cut(s) 220, 487
BseMII CTCAG 7 cut(s) 426, 513, 656, 751, 756, 1026, 1040
BseNI ACTGG 3 cut(s) 205, 667, 862
BseRI GAGGAG 1 cut(s) 692
BseSI GKGCMC 1 cut(s) 425
BseXI GCAGC 8 cut(s) 83, 489, 617, 620, 829, 851, 943, 958
Bsh1236I CGCG 1 cut(s) 915
BshFI GGCC 3 cut(s) 149, 219, 423
BshNI GGYRCC 1 cut(s) 119
BshVI ATCGAT 1 cut(s) 937
BsiSI CCGG 2 cut(s) 397, 425
BslI CCNNNNNNNGG 2 cut(s) 170, 204
BsmAI GTCTC 1 cut(s) 431
BsmBI CGTCTC 1 cut(s) 431
BsmI GAATGC 1 cut(s) 818
BsnI GGCC 3 cut(s) 149, 219, 423
Bsp119I TTCGAA 2 cut(s) 492, 908
Bsp120I GGGCCC 1 cut(s) 421
Bsp1286I GDGCHC 1 cut(s) 425
Bsp13I TCCGGA 1 cut(s) 396
Bsp143I GATC 3 cut(s) 688, 916, 934
Bsp1720I GCTNAGC 1 cut(s) 737
Bsp68I TCGCGA 1 cut(s) 915
BspACI CCGC 2 cut(s) 411, 666
BspANI GGCC 3 cut(s) 149, 219, 423
BspCNI CTCAG 7 cut(s) 427, 514, 655, 750, 755, 1027, 1039
BspDI ATCGAT 1 cut(s) 937
BspEI TCCGGA 1 cut(s) 396
BspFNI CGCG 1 cut(s) 915
BspLI GGNNCC 2 cut(s) 121, 423
BspPI GGATC 1 cut(s) 942
BspT104I TTCGAA 2 cut(s) 492, 908
BspT107I GGYRCC 1 cut(s) 119
BsrDI GCAATG 2 cut(s) 220, 487
BsrI ACTGG 3 cut(s) 205, 667, 862
BssECI CCNNGG 2 cut(s) 39, 150
BssMI GATC 3 cut(s) 688, 916, 934
BssT1I CCWWGG 1 cut(s) 39
Bst2UI CCWGG 2 cut(s) 138, 151
Bst4CI ACNGT 1 cut(s) 512
Bst6I CTCTTC 1 cut(s) 306
BstBI TTCGAA 2 cut(s) 492, 908
BstDEI CTNAG 7 cut(s) 435, 522, 642, 737, 742, 1026, 1035
BstF5I GGATG 2 cut(s) 724, 943
BstFNI CGCG 1 cut(s) 915
BstKTI GATC 3 cut(s) 691, 919, 937
BstMAI GTCTC 1 cut(s) 431
BstMBI GATC 3 cut(s) 688, 916, 934
BstMWI GCNNNNNNNGC 6 cut(s) 71, 80, 379, 477, 721, 1031
BstNI CCWGG 2 cut(s) 138, 151
BstNSI RCATGY 1 cut(s) 849
BstSCI CCNGG 3 cut(s) 136, 149, 423
BstSFI CTRYAG 1 cut(s) 499
BstSLI GKGCMC 1 cut(s) 425
BstUI CGCG 1 cut(s) 915
BstV1I GCAGC 8 cut(s) 83, 489, 617, 620, 829, 851, 943, 958
BstV2I GAAGAC 1 cut(s) 578
BstXI CCANNNNNNTGG 1 cut(s) 250
Bsu15I ATCGAT 1 cut(s) 937
Bsu36I CCTNAGG 1 cut(s) 522
BsuRI GGCC 3 cut(s) 149, 219, 423
BsuTUI ATCGAT 1 cut(s) 937
BtsCI GGATG 2 cut(s) 724, 943
BtsI GCAGTG 1 cut(s) 105
BtsIMutI CAGTG 3 cut(s) 105, 198, 619
BtuMI TCGCGA 1 cut(s) 915
Cfr13I GGNCC 3 cut(s) 421, 422, 995
ClaI ATCGAT 1 cut(s) 937
CseI GACGC 1 cut(s) 583
Csp6I GTAC 3 cut(s) 77, 548, 763
CviAII CATG 3 cut(s) 145, 692, 846
CviQI GTAC 3 cut(s) 77, 548, 763
DdeI CTNAG 7 cut(s) 435, 522, 642, 737, 742, 1026, 1035
DpnI GATC 3 cut(s) 690, 918, 936
DpnII GATC 3 cut(s) 688, 916, 934
EaeI YGGCCR 1 cut(s) 147
Eam1104I CTCTTC 1 cut(s) 306
EarI CTCTTC 1 cut(s) 306
Eco130I CCWWGG 1 cut(s) 39
Eco24I GRGCYC 1 cut(s) 425
Eco47I GGWCC 1 cut(s) 995
Eco57I CTGAAG 1 cut(s) 307
Eco81I CCTNAGG 1 cut(s) 522
EcoRII CCWGG 2 cut(s) 136, 149
EcoT14I CCWWGG 1 cut(s) 39
EcoT22I ATGCAT 1 cut(s) 781
EcoT38I GRGCYC 1 cut(s) 425
ErhI CCWWGG 1 cut(s) 39
Esp3I CGTCTC 1 cut(s) 431
FaeI CATG 3 cut(s) 148, 695, 849
FatI CATG 3 cut(s) 144, 691, 845
FauNDI CATATG 1 cut(s) 11
FbaI TGATCA 1 cut(s) 688
Fnu4HI GCNGC 9 cut(s) 72, 478, 631, 634, 667, 840, 843, 957, 972
FokI GGATG 2 cut(s) 731, 930
FriOI GRGCYC 1 cut(s) 425
Fsp4HI GCNGC 9 cut(s) 72, 478, 631, 634, 667, 840, 843, 957, 972
FspBI CTAG 3 cut(s) 26, 95, 365
GluI GCNGC 9 cut(s) 72, 478, 631, 634, 667, 840, 843, 957, 972
GsuI CTGGAG 1 cut(s) 357
HaeIII GGCC 3 cut(s) 149, 219, 423
HapII CCGG 2 cut(s) 397, 425
HgaI GACGC 1 cut(s) 583
Hin1II CATG 3 cut(s) 148, 695, 849
HindIII AAGCTT 1 cut(s) 699
HinfI GANTC 4 cut(s) 101, 174, 562, 910
HpaII CCGG 2 cut(s) 397, 425
HphI GGTGA 2 cut(s) 110, 400
Hpy166II GTNNAC 2 cut(s) 887, 995
Hpy188I TCNGA 2 cut(s) 645, 745
Hpy188III TCNNGA 4 cut(s) 336, 397, 521, 914
Hpy8I GTNNAC 2 cut(s) 887, 995
HpyAV CCTTC 1 cut(s) 198
HpyCH4III ACNGT 1 cut(s) 512
HpyCH4IV ACGT 1 cut(s) 440
HpyCH4V TGCA 6 cut(s) 695, 730, 779, 818, 845, 896
HpyF10VI GCNNNNNNNGC 6 cut(s) 71, 80, 379, 477, 721, 1031
HpyF3I CTNAG 7 cut(s) 435, 522, 642, 737, 742, 1026, 1035
HpySE526I ACGT 1 cut(s) 440
Hsp92II CATG 3 cut(s) 148, 695, 849
Kpn2I TCCGGA 1 cut(s) 396
Ksp22I TGATCA 1 cut(s) 688
Kzo9I GATC 3 cut(s) 688, 916, 934
LmnI GCTCC 2 cut(s) 590, 679
Lsp1109I GCAGC 8 cut(s) 83, 489, 617, 620, 829, 851, 943, 958
LweI GCATC 1 cut(s) 883
MaeI CTAG 3 cut(s) 26, 95, 365
MaeII ACGT 1 cut(s) 440
MaeIII GTNAC 5 cut(s) 98, 185, 254, 976, 1006
MalI GATC 3 cut(s) 690, 918, 936
MboI GATC 3 cut(s) 688, 916, 934
MboII GAAGA 5 cut(s) 23, 79, 293, 454, 583
MhlI GDGCHC 1 cut(s) 425
MlsI TGGCCA 1 cut(s) 149
MluNI TGGCCA 1 cut(s) 149
MlyI GAGTC 1 cut(s) 95
MmeI TCCRAC 1 cut(s) 971
Mox20I TGGCCA 1 cut(s) 149
Mph1103I ATGCAT 1 cut(s) 781
MroI TCCGGA 1 cut(s) 396
MscI TGGCCA 1 cut(s) 149
MseI TTAA 6 cut(s) 57, 222, 416, 654, 1017, 1042
Msp20I TGGCCA 1 cut(s) 149
MspA1I CMGCKG 3 cut(s) 74, 230, 842
MspI CCGG 2 cut(s) 397, 425
MspR9I CCNGG 3 cut(s) 138, 151, 425
Mva1269I GAATGC 1 cut(s) 818
MvaI CCWGG 2 cut(s) 138, 151
MvnI CGCG 1 cut(s) 915
MwoI GCNNNNNNNGC 6 cut(s) 71, 80, 379, 477, 721, 1031
NciI CCSGG 1 cut(s) 425
NdeI CATATG 1 cut(s) 11
NdeII GATC 3 cut(s) 688, 916, 934
NlaIII CATG 3 cut(s) 148, 695, 849
NlaIV GGNNCC 2 cut(s) 121, 423
NmuCI GTSAC 1 cut(s) 98
NruI TCGCGA 1 cut(s) 915
NsiI ATGCAT 1 cut(s) 781
NspI RCATGY 1 cut(s) 849
NspV TTCGAA 2 cut(s) 492, 908
PctI GAATGC 1 cut(s) 818
PfeI GAWTC 3 cut(s) 174, 562, 910
PkrI GCNGC 9 cut(s) 73, 479, 632, 635, 668, 841, 844, 958, 973
PleI GAGTC 1 cut(s) 95
PpsI GAGTC 1 cut(s) 95
PshBI ATTAAT 1 cut(s) 1017
PsiI TTATAA 1 cut(s) 963
Psp6I CCWGG 2 cut(s) 136, 149
PspGI CCWGG 2 cut(s) 136, 149
PspN4I GGNNCC 2 cut(s) 121, 423
PspOMI GGGCCC 1 cut(s) 421
PspPI GGNCC 3 cut(s) 421, 422, 995
PvuII CAGCTG 3 cut(s) 74, 230, 842
RruI TCGCGA 1 cut(s) 915
RsaI GTAC 3 cut(s) 78, 549, 764
RsaNI GTAC 3 cut(s) 77, 548, 763
SaqAI TTAA 6 cut(s) 57, 222, 416, 654, 1017, 1042
SatI GCNGC 9 cut(s) 72, 478, 631, 634, 667, 840, 843, 957, 972
Sau3AI GATC 3 cut(s) 688, 916, 934
Sau96I GGNCC 3 cut(s) 421, 422, 995
ScaI AGTACT 2 cut(s) 549, 764
SchI GAGTC 1 cut(s) 95
ScrFI CCNGG 3 cut(s) 138, 151, 425
SduI GDGCHC 1 cut(s) 425
SfaNI GCATC 1 cut(s) 883
SfcI CTRYAG 1 cut(s) 499
SfuI TTCGAA 2 cut(s) 492, 908
SinI GGWCC 1 cut(s) 995
SmlI CTYRAG 1 cut(s) 305
SmoI CTYRAG 1 cut(s) 305
SsiI CCGC 2 cut(s) 411, 666
SspMI CTAG 3 cut(s) 26, 95, 365
StyD4I CCNGG 3 cut(s) 136, 149, 423
StyI CCWWGG 1 cut(s) 39
TaaI ACNGT 1 cut(s) 512
TaiI ACGT 1 cut(s) 443
TaqI TCGA 4 cut(s) 177, 492, 908, 937
TatI WGTACW 2 cut(s) 547, 762
TauI GCSGC 1 cut(s) 669
TfiI GAWTC 3 cut(s) 174, 562, 910
Tru1I TTAA 6 cut(s) 57, 222, 416, 654, 1017, 1042
Tru9I TTAA 6 cut(s) 57, 222, 416, 654, 1017, 1042
TscAI CASTG 3 cut(s) 112, 205, 619
TseFI GTSAC 1 cut(s) 98
TseI GCWGC 8 cut(s) 71, 477, 630, 633, 839, 842, 956, 971
Tsp45I GTSAC 1 cut(s) 98
TspDTI ATGAA 3 cut(s) 79, 454, 932
TspRI CASTG 3 cut(s) 112, 205, 619
VpaK11BI GGWCC 1 cut(s) 995
VspI ATTAAT 1 cut(s) 1017
XapI RAATTY 2 cut(s) 648, 746
XceI RCATGY 1 cut(s) 849
XspI CTAG 3 cut(s) 26, 95, 365
ZrmI AGTACT 2 cut(s) 549, 764
Zsp2I ATGCAT 1 cut(s) 781
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.